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Protein
Submitted name:

Pumilio RNA binding family member 3

Gene

PUM3

Organism
Ictidomys tridecemlineatus (Thirteen-lined ground squirrel) (Spermophilus tridecemlineatus)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Submitted name:
Pumilio RNA binding family member 3Imported
Gene namesi
Name:PUM3Imported
OrganismiIctidomys tridecemlineatus (Thirteen-lined ground squirrel) (Spermophilus tridecemlineatus)Imported
Taxonomic identifieri43179 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciuromorphaSciuridaeXerinaeMarmotiniIctidomys
Proteomesi
  • UP000005215 Componenti: Unassembled WGS sequence

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Interactioni

Protein-protein interaction databases

STRINGi43179.ENSSTOP00000008605.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini136 – 509PUM-HDInterPro annotationAdd BLAST374
Repeati163 – 199PumilioPROSITE-ProRule annotationAdd BLAST37
Repeati200 – 235PumilioPROSITE-ProRule annotationAdd BLAST36
Repeati349 – 384PumilioPROSITE-ProRule annotationAdd BLAST36
Repeati423 – 459PumilioPROSITE-ProRule annotationAdd BLAST37

Keywords - Domaini

RepeatSAAS annotation

Phylogenomic databases

eggNOGiKOG2050. Eukaryota.
ENOG410XSHY. LUCA.
GeneTreeiENSGT00390000015757.
InParanoidiI3MDU4.
OMAiREWYGPE.
OrthoDBiEOG091G06QP.
TreeFamiTF312954.

Family and domain databases

Gene3Di1.25.10.10. 1 hit.
InterProiView protein in InterPro
IPR011989. ARM-like.
IPR016024. ARM-type_fold.
IPR012959. CPL_dom.
IPR033133. PUM-HD.
IPR001313. Pumilio_RNA-bd_rpt.
PfamiView protein in Pfam
PF08144. CPL. 1 hit.
SMARTiView protein in SMART
SM00025. Pumilio. 6 hits.
SUPFAMiSSF48371. SSF48371. 2 hits.
PROSITEiView protein in PROSITE
PS50302. PUM. 4 hits.
PS50303. PUM_HD. 1 hit.

Sequencei

Sequence statusi: Complete.

I3MDU4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MMEVKREKKF TGKGTKSLQG KNRFHKTRDS SSSKAFPPKV KDSGPKITSK
60 70 80 90 100
NFEKSATKPG KKGVKQFKNK QQGDKGPKNK FQQANKFNKK RKFQPDNKSD
110 120 130 140 150
ESATKKPKWD DFKKKKKELK QSRQLSDKTN YDIVVRAKQI WEILRRKDCD
160 170 180 190 200
KEKRVKLMSD LQKLIQGKIK TIAFAHDSTR VIQCYIQHGN EEQRKQAFEE
210 220 230 240 250
LRGDLVELSK AKYSRNIVKK FLMYGSKPQI AEIIRSFKGH VRKMLRHAEA
260 270 280 290 300
SAIVEYAYND KAILEQRNML TEELYGNTFQ LYKSSDHPTL DKVLEVQPEK
310 320 330 340 350
LELIMDEMKQ ILTPMAQKEA VIKHSLVHKV FLDFFTYAPP KLRSELIEAI
360 370 380 390 400
REAVVYLAHT HDGARVAMHC LWHGTPKDRK VIVKTMKTYV EKVANGQYSH
410 420 430 440 450
LVLLAAFDCI DDTKLVKQII ISEIISSLPN IVNDKYGRKV LLYLLSPRDP
460 470 480 490 500
AHTVPEIIEV LQKGDGNAHS KKDTEIRRRE LLESISPALL SYLQGHAQEV
510 520 530 540 550
VLDKSACVLV SDILGSAIGD VQPAMNAIAS LAAAELHPGG KDGELHVAEH
560 570 580 590 600
PAGHLVLKWL IEQDKKMKEN GKEGCFAKTL VEHVGMKNLK SWASINRGAI
610 620 630 640
ILSSLLQSSD QEVANKVKAG LKSLIPTLEK NKSKSKGIET LLEKLTT
Length:647
Mass (Da):73,340
Last modified:November 22, 2017 - v2
Checksum:i5F2429BC3721550D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AGTP01031833 Genomic DNA. No translation available.
AGTP01031834 Genomic DNA. No translation available.
RefSeqiXP_005324130.1. XM_005324073.1.

Genome annotation databases

EnsembliENSSTOT00000009592; ENSSTOP00000008605; ENSSTOG00000009586.
GeneIDi101957711.

Similar proteinsi

Entry informationi

Entry nameiI3MDU4_ICTTR
AccessioniPrimary (citable) accession number: I3MDU4
Entry historyiIntegrated into UniProtKB/TrEMBL: July 11, 2012
Last sequence update: November 22, 2017
Last modified: December 20, 2017
This is version 33 of the entry and version 2 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteomeImported