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Protein
Submitted name:

Uncharacterized protein

Gene
N/A
Organism
Ictidomys tridecemlineatus (Thirteen-lined ground squirrel) (Spermophilus tridecemlineatus)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRNA-bindingPROSITE-ProRule annotation
LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
OrganismiIctidomys tridecemlineatus (Thirteen-lined ground squirrel) (Spermophilus tridecemlineatus)Imported
Taxonomic identifieri43179 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciuromorphaSciuridaeXerinaeMarmotiniIctidomys
Proteomesi
  • UP000005215 Componenti: Unassembled WGS sequence

Interactioni

Protein-protein interaction databases

STRINGi43179.ENSSTOP00000005321.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini238 – 324RRMInterPro annotationAdd BLAST87
Domaini375 – 406RanBP2-typeInterPro annotationAdd BLAST32

Keywords - Domaini

Zinc-fingerPROSITE-ProRule annotationSAAS annotation

Phylogenomic databases

eggNOGiENOG410IP58. Eukaryota.
ENOG4111GEG. LUCA.
GeneTreeiENSGT00530000063105.
InParanoidiI3M700.
OrthoDBiEOG091G0U8W.
TreeFamiTF322599.

Family and domain databases

Gene3Di3.30.70.330. 1 hit.
InterProiView protein in InterPro
IPR034459. FUS.
IPR012677. Nucleotide-bd_a/b_plait_sf.
IPR035979. RBD_domain_sf.
IPR000504. RRM_dom.
IPR034870. TET_fam.
IPR001876. Znf_RanBP2.
IPR036443. Znf_RanBP2_sf.
PANTHERiPTHR23238. PTHR23238. 2 hits.
PTHR23238:SF5. PTHR23238:SF5. 2 hits.
PfamiView protein in Pfam
PF00076. RRM_1. 1 hit.
PF00641. zf-RanBP. 1 hit.
SMARTiView protein in SMART
SM00360. RRM. 1 hit.
SM00547. ZnF_RBZ. 1 hit.
SUPFAMiSSF54928. SSF54928. 1 hit.
SSF90209. SSF90209. 1 hit.
PROSITEiView protein in PROSITE
PS50102. RRM. 1 hit.
PS01358. ZF_RANBP2_1. 1 hit.
PS50199. ZF_RANBP2_2. 1 hit.

Sequencei

Sequence statusi: Complete.

I3M700-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MASNDYTQQA TQSYGAYPTQ PGQGYSQQSN QPYGQQSYSG YGQSADTSGY
60 70 80 90 100
GQSSYGSSYG QTQNQQPAPS STSGSYGSSS QSSSYGQPPS GGYGQQSGYG
110 120 130 140 150
GQQQSYGQQQ SSYNPPQGYG QQNQYNSSSG GGGGGGGGSY GQDQSSMSGG
160 170 180 190 200
GGGYGNQDQS GGGGGGYGGG QQDRGGRGRG GGGGYNRSSG GYEPRGRGGG
210 220 230 240 250
RGGRGGMGGS DRGGFNKFGG PRDQGSRHDS EQDNSDNNTI FVQGLGENVT
260 270 280 290 300
IESVADYFKQ IGIIKTNKKT GQPMINLYTD RETGKLKGEA TVSFDDPPSA
310 320 330 340 350
KAAIDWFDGK EFSGNPIKVS FATRRADFNR GGGNGRGGRG RGGPMGRGGY
360 370 380 390 400
GGGGSGGGGR GGFPSGGGGG GGQQRAGDWK CPNPTCENMN FSWRNECNQC
410 420 430 440 450
KAPKPDGPGG GPGGSHMGGN YGDDRRGGRG GYDRGGYRGR GGDRGGFRGG
460
RGGGDRGGFG PGKMDS
Length:466
Mass (Da):47,120
Last modified:November 22, 2017 - v2
Checksum:iB659920721C3E827
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AGTP01031221 Genomic DNA. No translation available.
AGTP01031222 Genomic DNA. No translation available.

Genome annotation databases

EnsembliENSSTOT00000005948; ENSSTOP00000005321; ENSSTOG00000005943.

Similar proteinsi

Entry informationi

Entry nameiI3M700_ICTTR
AccessioniPrimary (citable) accession number: I3M700
Entry historyiIntegrated into UniProtKB/TrEMBL: July 11, 2012
Last sequence update: November 22, 2017
Last modified: March 28, 2018
This is version 36 of the entry and version 2 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported