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Protein
Submitted name:

PCF11 cleavage and polyadenylation factor subunit

Gene

PCF11

Organism
Ictidomys tridecemlineatus (Thirteen-lined ground squirrel) (Spermophilus tridecemlineatus)
Status
Unreviewed-Annotation score: -Protein predictedi

Names & Taxonomyi

Protein namesi
Submitted name:
PCF11 cleavage and polyadenylation factor subunitImported
Gene namesi
Name:PCF11Imported
OrganismiIctidomys tridecemlineatus (Thirteen-lined ground squirrel) (Spermophilus tridecemlineatus)Imported
Taxonomic identifieri43179 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciuromorphaSciuridaeXerinaeMarmotiniIctidomys
Proteomesi
  • UP000005215 Componenti: Unassembled WGS sequence

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Interactioni

Protein-protein interaction databases

STRINGi43179.ENSSTOP00000004945

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini14 – 142CIDInterPro annotationAdd BLAST129

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili208 – 235Sequence analysisAdd BLAST28

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

eggNOGiKOG2071 Eukaryota
ENOG410Y266 LUCA
GeneTreeiENSGT00440000034259
InParanoidiI3M682
OrthoDBiEOG091G05E7
TreeFamiTF350069

Family and domain databases

Gene3Di1.25.40.90, 1 hit
InterProiView protein in InterPro
IPR006569 CID_dom
IPR008942 ENTH_VHS
IPR006903 RNA_pol_II-bd
PfamiView protein in Pfam
PF04818 CTD_bind, 1 hit
SMARTiView protein in SMART
SM00582 RPR, 1 hit
SUPFAMiSSF48464 SSF48464, 1 hit
PROSITEiView protein in PROSITE
PS51391 CID, 1 hit

Sequencei

Sequence statusi: Complete.

I3M682-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSEQTPAEAG AAGAREDACR DYQSSLEDLT FNSKPHINML TILAEENLPF
60 70 80 90 100
AKEIVSLIEA QTAKAPSSEK LPVMYLMDSI VKNVGREYLT AFTKNLVATF
110 120 130 140 150
ICVFEKVDEN TRKSLFKLRS TWDEIFPLKK LYALDVRVNS LDPAWPIKPL
160 170 180 190 200
PPNVNTSSIH VNPKFLNKSP EEPSTPGTVV SSPSISTPPI VPDIQKNLTQ
210 220 230 240 250
EQLIRQQLLA KQKQLLELQQ KKLELELEQA KAQLAVSLSV QQETSNLGPG
260 270 280 290 300
SAPSKLHVSQ IPPMAVKAPH QVPVQPEKNR PCPSLQIQDL KGTNRDPRLN
310 320 330 340 350
RMSQHSSHGK DQSHRKEFLM NTLNQSDIKT SKTVPSEKLN SSKQEKSKSG
360 370 380 390 400
EKITKKELDQ LDSKSKSKSK SPSPLKNKVS HTKDLKNQES ESVRLSDMNK
410 420 430 440 450
RDPRLKKHLQ DKTDGKDDDV KEKRKTVEKK DKDEHMKSSE HRLIGSRNKI
460 470 480 490 500
INGIVQKQDT ITEELEKQGI KPGRSSNRKR SRSRSPKSRS PIIHSPKRRD
510 520 530 540 550
RRSPKRRQRS MSPTSTPKAG KIRQSGIKQS HMEEFTPPSR EERNAKRSTK
560 570 580 590 600
QDVRDPRRMK KTEEERPQET ANQHSTKSGS EPKENIENWQ SSKSAKRWKS
610 620 630 640 650
GWEENKSLQQ GDEHSKSPHL RHRESWSSTK GILSPRAPKQ QHRLSVDANL
660 670 680 690 700
QIPKELTVAS KRELLQKTSE RLASGEITQD EFLVVVHQIR QLFQYQEGKH
710 720 730 740 750
RCSVRDSPTE ENKGGLKKKP LLSDAELTYY EHKAKLKRTQ VQHSFPRLDL
760 770 780 790 800
LDPDIFDYPL TDALLSGIEC EPSKSKHASR NSGAQFDRKE QFSERARRLS
810 820 830 840 850
PISGSRTYAE NLSPHEGRRR HDEQVSAKGV REEQRSPFND RFPLKRPRYE
860 870 880 890 900
DSDKPFVDSP ASRFAGLDTN QRLTALAEDR PLFDGPSRPS VTRDGPTKMI
910 920 930 940 950
FEGPNKLSPR IDGPPTPGSL RFDGSPGQMG GGGPLRFEGP QGQLGGGCPL
960 970 980 990 1000
RFEGPPGPVG TPLRFEGPIG QAGGGGFRFE GSPGLRFEGS AGGLRFEGPG
1010 1020 1030 1040 1050
GQPVGGLRFE GHRGQPMGGL RFEGPHGQPV GGLRFDNPRG QPVGGLRFEG
1060 1070 1080 1090 1100
GHGPSGAAIR FDGPHGQPGG GIRFEGPLLQ QGVGMRFEGP HGQSVAGLRF
1110 1120 1130 1140 1150
EGQHNQLGGN LRFEGPHGQP GVGIRFEGPL VQQGGGMRFE GPSVPGGGLR
1160 1170 1180 1190 1200
IEGPLGQGGP RFEGHALRFD GQPGQPSLLP RFDGLHGQPG PRFERTPGQP
1210 1220 1230 1240 1250
GPQRFDGPPG QQVQPRFDGI PQRFDGPQHQ QASRFDIPLG LQGTRFDNHP
1260 1270 1280 1290 1300
SQRLESFNQT GPYNDPPGSA FNAPSQGLQF QRHEQMFDSP QGPNFNGPHG
1310 1320 1330 1340 1350
PGNQSFSTPL NRASGHYFDE KNLQSSQFGN FGNLPAPLSV GNIQASQQVM
1360 1370 1380 1390 1400
TGVAQPVAFG QGQQFLPVHP QNPGAFVQNP SGALPKAYPD NHLSQVDVNE
1410 1420 1430 1440 1450
LFSKLLKTGI LKLSQPDSAT TQVNEVAAQP PPEEEEDQNE DQDVPDLTNF
1460 1470 1480 1490 1500
TIEELKQRYD SVINRLYTGI QCYSCGMRFT TSQTDVYADH LDWHYRQNRT
1510 1520 1530 1540 1550
EKDVSRKVTH RRWYYSLTDW IEFEEIADLE ERAKSQFFEK VHEEVVLKTQ
1560 1570 1580 1590 1600
EAAKEKEFQS VPAGPAGAVE SCEICQEQFE QYWDEEEEEW HLKNAIRVDG
1610 1620 1630 1640 1650
KIYHPSCYED YQNTSSFDCT PSPSKTPVEN PLNIMLNIVK NELQEPCESP
1660 1670 1680
KVKEERIDTP PACTEESIAT PTEIKTENDT VESV
Length:1,684
Mass (Da):187,917
Last modified:November 22, 2017 - v2
Checksum:i573D15A3F8F01E65
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AGTP01029269 Genomic DNA No translation available.
AGTP01029270 Genomic DNA No translation available.
RefSeqiXP_013213133.1, XM_013357679.1

Genome annotation databases

EnsembliENSSTOT00000005528; ENSSTOP00000004945; ENSSTOG00000005515
GeneIDi101971207

Similar proteinsi

Entry informationi

Entry nameiI3M682_ICTTR
AccessioniPrimary (citable) accession number: I3M682
Entry historyiIntegrated into UniProtKB/TrEMBL: July 11, 2012
Last sequence update: November 22, 2017
Last modified: March 28, 2018
This is version 31 of the entry and version 2 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

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