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Protein
Submitted name:

Nuclear receptor subfamily 3 group C member 2

Gene

NR3C2

Organism
Ictidomys tridecemlineatus (Thirteen-lined ground squirrel) (Spermophilus tridecemlineatus)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi600 – 679Nuclear receptorPROSITE-ProRule annotationAdd BLAST80

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingPROSITE-ProRule annotationSAAS annotation
Biological processTranscription, Transcription regulationPROSITE-ProRule annotationSAAS annotation
LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Submitted name:
Nuclear receptor subfamily 3 group C member 2Imported
Gene namesi
Name:NR3C2Imported
OrganismiIctidomys tridecemlineatus (Thirteen-lined ground squirrel) (Spermophilus tridecemlineatus)Imported
Taxonomic identifieri43179 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciuromorphaSciuridaeXerinaeMarmotiniIctidomys
Proteomesi
  • UP000005215 Componenti: Unassembled WGS sequence

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusPROSITE-ProRule annotationSAAS annotation

Interactioni

Protein-protein interaction databases

STRINGi43179.ENSSTOP00000003652.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini600 – 679Nuclear receptorInterPro annotationAdd BLAST80

Sequence similaritiesi

Belongs to the nuclear hormone receptor family.SAAS annotation

Keywords - Domaini

Zinc-fingerPROSITE-ProRule annotationSAAS annotation

Phylogenomic databases

eggNOGiKOG3575. Eukaryota.
ENOG410XRZC. LUCA.
GeneTreeiENSGT00760000118887.
InParanoidiI3M3J5.
OMAiSKICLVC.
OrthoDBiEOG091G0166.
TreeFamiTF106510.

Family and domain databases

Gene3Di3.30.50.10. 1 hit.
InterProiView protein in InterPro
IPR000536. Nucl_hrmn_rcpt_lig-bd.
IPR001628. Znf_hrmn_rcpt.
IPR013088. Znf_NHR/GATA.
PfamiView protein in Pfam
PF00104. Hormone_recep. 1 hit.
PF00105. zf-C4. 1 hit.
PRINTSiPR00047. STROIDFINGER.
SMARTiView protein in SMART
SM00430. HOLI. 1 hit.
SM00399. ZnF_C4. 1 hit.
SUPFAMiSSF48508. SSF48508. 1 hit.
PROSITEiView protein in PROSITE
PS00031. NUCLEAR_REC_DBD_1. 1 hit.
PS51030. NUCLEAR_REC_DBD_2. 1 hit.

Sequencei

Sequence statusi: Complete.

I3M3J5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
METKGYHSLP EGLDMERRWS QVSQAVEQSS LGPTERTDES NYMEIVNVSS
60 70 80 90 100
VSGAIPNSST QGSSKEKHEL LPCLQQDNNR SGTLTSDIKT ELESKELSAT
110 120 130 140 150
VAESMGLYMD SVRDADYAFD QQNQQGSGSP AKIYQNVEQL VKFYKENGHR
160 170 180 190 200
PSTLSSVSRP LRSFMSDSGS SMNSGVMRAI VKSPIMCHDK SPSVCSPLNM
210 220 230 240 250
TSSVCSPAGI NSVSSTTTSF GSFSVHSPIT QGTPLTCSPN IENRSSRSHS
260 270 280 290 300
PAHASNVGSP LSSPLSSMKS PISSPPSHCS VKSPVSSPNN ATLRSSVSSP
310 320 330 340 350
ANLNNSRCSV SSPSNTNNRS TLSSPTASTV GSICSPINNA FSYPASGTSA
360 370 380 390 400
GAGATRDVVP SPDTHEKGAH EIPFPKTEEV ENAISNGVTG QLNIVQYIKP
410 420 430 440 450
EPDGAFSSSC LGGNSKINSE SPFSVPIKQE STKHSCSGTS FKGNPTVNPF
460 470 480 490 500
PFMDGSYFSF MDDKDYYSLS GILGPPVPGF DGNCEGSGFP MGIKQEPDDG
510 520 530 540 550
SYYPEASIPS SAIVGVNSSG QSFHYRIGAQ GTISLSRSAR DQSFQHLSSF
560 570 580 590 600
PPVSTLVESW KSHGDLSSRR SDGYPVLEYI PENVSSSTLR SVSTGSSRPS
610 620 630 640 650
KICLVCGDEA SGCHYGVVTC GSCKVFFKRA VEGKCSWQHN YLCAGRNDCI
660 670 680 690 700
IDKIRRKNCP ACRLQKCLQA GMNLGARKSK KLGKLKGIHE DQPPQQQQQQ
710 720 730 740 750
PPPPPPQSPE EGTTYIAPAK EPSVNTALVP QLSTISRALT PSPVMVLESI
760 770 780 790 800
EPETVYAGYD SSKPDTAENL LSTLNRLAGK QMIQVVKWAK VLPGFKNLPL
810 820 830 840 850
EDQITLIQYS WMCLSSFALS WRSYKHTNSQ FLYFAPDLVF NEEKMHQSAM
860 870 880 890 900
YELCQGMHQI SLQFVRLQLT FEEYAIMKVL LLLSTVPKDG LKCQAAFEEM
910 920 930 940 950
RANYIKELRK MVTKCPNNSG QSWQRFYQLT KLLDSMHDLV SDLLEFCFYT
960 970 980
FRESQALKVE FPAMLVEIIS DQLPKVESGN AKALYFHRK
Length:989
Mass (Da):107,660
Last modified:July 11, 2012 - v1
Checksum:i6B56F985B48D62C0
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AGTP01049025 Genomic DNA. No translation available.
AGTP01049026 Genomic DNA. No translation available.
AGTP01049027 Genomic DNA. No translation available.
AGTP01049028 Genomic DNA. No translation available.
AGTP01049029 Genomic DNA. No translation available.
AGTP01049030 Genomic DNA. No translation available.
AGTP01049031 Genomic DNA. No translation available.
AGTP01049032 Genomic DNA. No translation available.
AGTP01049033 Genomic DNA. No translation available.
AGTP01049034 Genomic DNA. No translation available.

Genome annotation databases

EnsembliENSSTOT00000004072; ENSSTOP00000003652; ENSSTOG00000004069.

Similar proteinsi

Entry informationi

Entry nameiI3M3J5_ICTTR
AccessioniPrimary (citable) accession number: I3M3J5
Entry historyiIntegrated into UniProtKB/TrEMBL: July 11, 2012
Last sequence update: July 11, 2012
Last modified: September 27, 2017
This is version 44 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteomeImported