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Protein

60S ribosomal protein L13

Gene

RPL13

Organism
Sus scrofa (Pig)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal proteinUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L13UniRule annotation
Gene namesi
Name:RPL13Imported
OrganismiSus scrofa (Pig)Imported
Taxonomic identifieri9823 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaLaurasiatheriaCetartiodactylaSuinaSuidaeSus
Proteomesi
  • UP000008227 Componenti: Chromosome 6

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Proteomic databases

PaxDbiI3LSD3.
PeptideAtlasiI3LSD3.
PRIDEiI3LSD3.

Expressioni

Gene expression databases

BgeeiENSSSCG00000024974.
GenevisibleiI3LSD3. SS.

Interactioni

Protein-protein interaction databases

STRINGi9823.ENSSSCP00000027026.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3J7Oelectron microscopy3.50L1-211[»]
3J7Pelectron microscopy3.50L1-211[»]
3J7Qelectron microscopy3.50L1-211[»]
3J7Relectron microscopy3.90L1-211[»]
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the eukaryotic ribosomal protein eL13 family.UniRule annotation

Phylogenomic databases

eggNOGiKOG3295. Eukaryota.
COG4352. LUCA.
GeneTreeiENSGT00390000007818.
InParanoidiI3LSD3.
KOiK02873.
OMAiVMPITNE.
OrthoDBiEOG091G0KGO.
TreeFamiTF300073.

Family and domain databases

InterProiView protein in InterPro
IPR034295. Ribosomal_L13_euk.
IPR001380. Ribosomal_L13e.
IPR018256. Ribosomal_L13e_CS.
PANTHERiPTHR11722. PTHR11722. 1 hit.
PfamiView protein in Pfam
PF01294. Ribosomal_L13e. 1 hit.
PROSITEiView protein in PROSITE
PS01104. RIBOSOMAL_L13E. 1 hit.

Sequencei

Sequence statusi: Complete.

I3LSD3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAPSRNGMIL KPHFHKDWQR RVATWFNQPA RKIRRRKARQ AKARRIAPRP
60 70 80 90 100
ASGPLRPVVR CPTVRYHTKV RAGRGFSLEE LRVAGIHKKV ARTIGISVDP
110 120 130 140 150
RRRNKCTESL QANVQRLKEY RSKLILFPRK PSAPKKGDSS AEELKLATQL
160 170 180 190 200
TGPVMPIRNV YKREKARVIT DEEKNFKAFA SLRMARANAR LFGIRAKRAK
210
EAAEQDVEKK K
Length:211
Mass (Da):24,306
Last modified:July 11, 2012 - v1
Checksum:i45D99425E2A67EED
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FP325274 Genomic DNA. No translation available.
RefSeqiNP_001230274.1. NM_001243345.1.
UniGeneiSsc.769.

Genome annotation databases

EnsembliENSSSCT00000028682; ENSSSCP00000027026; ENSSSCG00000024974.
GeneIDi100628232.
KEGGissc:100628232.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FP325274 Genomic DNA. No translation available.
RefSeqiNP_001230274.1. NM_001243345.1.
UniGeneiSsc.769.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3J7Oelectron microscopy3.50L1-211[»]
3J7Pelectron microscopy3.50L1-211[»]
3J7Qelectron microscopy3.50L1-211[»]
3J7Relectron microscopy3.90L1-211[»]
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi9823.ENSSSCP00000027026.

Proteomic databases

PaxDbiI3LSD3.
PeptideAtlasiI3LSD3.
PRIDEiI3LSD3.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSSSCT00000028682; ENSSSCP00000027026; ENSSSCG00000024974.
GeneIDi100628232.
KEGGissc:100628232.

Organism-specific databases

CTDi6137.

Phylogenomic databases

eggNOGiKOG3295. Eukaryota.
COG4352. LUCA.
GeneTreeiENSGT00390000007818.
InParanoidiI3LSD3.
KOiK02873.
OMAiVMPITNE.
OrthoDBiEOG091G0KGO.
TreeFamiTF300073.

Gene expression databases

BgeeiENSSSCG00000024974.
GenevisibleiI3LSD3. SS.

Family and domain databases

InterProiView protein in InterPro
IPR034295. Ribosomal_L13_euk.
IPR001380. Ribosomal_L13e.
IPR018256. Ribosomal_L13e_CS.
PANTHERiPTHR11722. PTHR11722. 1 hit.
PfamiView protein in Pfam
PF01294. Ribosomal_L13e. 1 hit.
PROSITEiView protein in PROSITE
PS01104. RIBOSOMAL_L13E. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiI3LSD3_PIG
AccessioniPrimary (citable) accession number: I3LSD3
Entry historyiIntegrated into UniProtKB/TrEMBL: July 11, 2012
Last sequence update: July 11, 2012
Last modified: May 10, 2017
This is version 35 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.