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Protein

60S ribosomal protein L13

Gene

RPL13

Organism
Sus scrofa (Pig)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal proteinUniRule annotation

Enzyme and pathway databases

ReactomeiR-SSC-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-SSC-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-SSC-6791226. Major pathway of rRNA processing in the nucleolus.
R-SSC-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-SSC-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L13UniRule annotation
Gene namesi
Name:RPL13Imported
OrganismiSus scrofa (Pig)Imported
Taxonomic identifieri9823 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaLaurasiatheriaCetartiodactylaSuinaSuidaeSus
Proteomesi
  • UP000008227 Componenti: Chromosome 6

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Proteomic databases

PaxDbiI3LSD3.
PeptideAtlasiI3LSD3.

Expressioni

Gene expression databases

GenevisibleiI3LSD3. SS.

Interactioni

Protein-protein interaction databases

STRINGi9823.ENSSSCP00000027026.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3J7Oelectron microscopy3.50L1-211[»]
3J7Pelectron microscopy3.50L1-211[»]
3J7Qelectron microscopy3.50L1-211[»]
3J7Relectron microscopy3.90L1-211[»]
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L13e family.UniRule annotation

Phylogenomic databases

eggNOGiKOG3295. Eukaryota.
COG4352. LUCA.
GeneTreeiENSGT00390000007818.
InParanoidiI3LSD3.
KOiK02873.
OMAiHCPTFRY.
OrthoDBiEOG74TX1G.
TreeFamiTF300073.

Family and domain databases

InterProiIPR001380. Ribosomal_L13e.
IPR018256. Ribosomal_L13e_CS.
[Graphical view]
PANTHERiPTHR11722. PTHR11722. 1 hit.
PfamiPF01294. Ribosomal_L13e. 1 hit.
[Graphical view]
PROSITEiPS01104. RIBOSOMAL_L13E. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

I3LSD3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAPSRNGMIL KPHFHKDWQR RVATWFNQPA RKIRRRKARQ AKARRIAPRP
60 70 80 90 100
ASGPLRPVVR CPTVRYHTKV RAGRGFSLEE LRVAGIHKKV ARTIGISVDP
110 120 130 140 150
RRRNKCTESL QANVQRLKEY RSKLILFPRK PSAPKKGDSS AEELKLATQL
160 170 180 190 200
TGPVMPIRNV YKREKARVIT DEEKNFKAFA SLRMARANAR LFGIRAKRAK
210
EAAEQDVEKK K
Length:211
Mass (Da):24,306
Last modified:July 11, 2012 - v1
Checksum:i45D99425E2A67EED
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FP325274 Genomic DNA. No translation available.
RefSeqiNP_001230274.1. NM_001243345.1.
UniGeneiSsc.769.

Genome annotation databases

EnsembliENSSSCT00000028682; ENSSSCP00000027026; ENSSSCG00000024974.
GeneIDi100628232.
KEGGissc:100628232.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FP325274 Genomic DNA. No translation available.
RefSeqiNP_001230274.1. NM_001243345.1.
UniGeneiSsc.769.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3J7Oelectron microscopy3.50L1-211[»]
3J7Pelectron microscopy3.50L1-211[»]
3J7Qelectron microscopy3.50L1-211[»]
3J7Relectron microscopy3.90L1-211[»]
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi9823.ENSSSCP00000027026.

Proteomic databases

PaxDbiI3LSD3.
PeptideAtlasiI3LSD3.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSSSCT00000028682; ENSSSCP00000027026; ENSSSCG00000024974.
GeneIDi100628232.
KEGGissc:100628232.

Organism-specific databases

CTDi6137.

Phylogenomic databases

eggNOGiKOG3295. Eukaryota.
COG4352. LUCA.
GeneTreeiENSGT00390000007818.
InParanoidiI3LSD3.
KOiK02873.
OMAiHCPTFRY.
OrthoDBiEOG74TX1G.
TreeFamiTF300073.

Enzyme and pathway databases

ReactomeiR-SSC-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-SSC-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-SSC-6791226. Major pathway of rRNA processing in the nucleolus.
R-SSC-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-SSC-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Gene expression databases

GenevisibleiI3LSD3. SS.

Family and domain databases

InterProiIPR001380. Ribosomal_L13e.
IPR018256. Ribosomal_L13e_CS.
[Graphical view]
PANTHERiPTHR11722. PTHR11722. 1 hit.
PfamiPF01294. Ribosomal_L13e. 1 hit.
[Graphical view]
PROSITEiPS01104. RIBOSOMAL_L13E. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Porcine genome sequencing project
    Submitted (NOV-2009) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DurocImported.
  2. Ensembl
    Submitted (MAY-2012) to UniProtKB
    Cited for: IDENTIFICATION.
  3. "Structure of the mammalian ribosome-Sec61 complex to 3.4 A resolution."
    Voorhees R.M., Fernandez I.S., Scheres S.H., Hegde R.S.
    Cell 157:1632-1643(2014) [PubMed] [Europe PMC] [Abstract]
    Cited for: STRUCTURE BY ELECTRON MICROSCOPY (3.40 ANGSTROMS).

Entry informationi

Entry nameiI3LSD3_PIG
AccessioniPrimary (citable) accession number: I3LSD3
Entry historyi
Integrated into UniProtKB/TrEMBL: July 11, 2012
Last sequence update: July 11, 2012
Last modified: July 6, 2016
This is version 29 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.