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Protein

60S ribosomal protein L13

Gene

RPL13

Organism
Sus scrofa (Pig)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal proteinUniRule annotation

Enzyme and pathway databases

ReactomeiR-SSC-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L13UniRule annotation
Gene namesi
Name:RPL13Imported
OrganismiSus scrofa (Pig)Imported
Taxonomic identifieri9823 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaLaurasiatheriaCetartiodactylaSuinaSuidaeSus
Proteomesi
  • UP000008227 Componenti: Chromosome 6

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Proteomic databases

PaxDbiI3LSD3.
PeptideAtlasiI3LSD3.
PRIDEiI3LSD3.

Expressioni

Gene expression databases

BgeeiENSSSCG00000024974.
GenevisibleiI3LSD3. SS.

Interactioni

Protein-protein interaction databases

STRINGi9823.ENSSSCP00000027026.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3J7Oelectron microscopy3.50L1-211[»]
3J7Pelectron microscopy3.50L1-211[»]
3J7Qelectron microscopy3.50L1-211[»]
3J7Relectron microscopy3.90L1-211[»]
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the eukaryotic ribosomal protein eL13 family.UniRule annotation

Phylogenomic databases

eggNOGiKOG3295. Eukaryota.
COG4352. LUCA.
GeneTreeiENSGT00390000007818.
InParanoidiI3LSD3.
KOiK02873.
OMAiIVVDHRR.
OrthoDBiEOG091G0KGO.
TreeFamiTF300073.

Family and domain databases

InterProiView protein in InterPro
IPR001380. Ribosomal_L13e.
IPR018256. Ribosomal_L13e_CS.
PANTHERiPTHR11722. PTHR11722. 1 hit.
PfamiView protein in Pfam
PF01294. Ribosomal_L13e. 1 hit.
PROSITEiView protein in PROSITE
PS01104. RIBOSOMAL_L13E. 1 hit.

Sequencei

Sequence statusi: Complete.

I3LSD3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAPSRNGMIL KPHFHKDWQR RVATWFNQPA RKIRRRKARQ AKARRIAPRP
60 70 80 90 100
ASGPLRPVVR CPTVRYHTKV RAGRGFSLEE LRVAGIHKKV ARTIGISVDP
110 120 130 140 150
RRRNKCTESL QANVQRLKEY RSKLILFPRK PSAPKKGDSS AEELKLATQL
160 170 180 190 200
TGPVMPIRNV YKREKARVIT DEEKNFKAFA SLRMARANAR LFGIRAKRAK
210
EAAEQDVEKK K
Length:211
Mass (Da):24,306
Last modified:July 11, 2012 - v1
Checksum:i45D99425E2A67EED
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AEMK02000039 Genomic DNA. No translation available.
RefSeqiNP_001230274.1. NM_001243345.1.
UniGeneiSsc.769.

Genome annotation databases

EnsembliENSSSCT00000028682; ENSSSCP00000027026; ENSSSCG00000024974.
GeneIDi100628232.
KEGGissc:100628232.

Similar proteinsi

Entry informationi

Entry nameiI3LSD3_PIG
AccessioniPrimary (citable) accession number: I3LSD3
Entry historyiIntegrated into UniProtKB/TrEMBL: July 11, 2012
Last sequence update: July 11, 2012
Last modified: October 25, 2017
This is version 40 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported