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Protein
Submitted name:

DEAD-box helicase 28

Gene

DDX28

Organism
Sus scrofa (Pig)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Submitted name:
DEAD-box helicase 28Imported
Gene namesi
Name:DDX28Imported
OrganismiSus scrofa (Pig)Imported
Taxonomic identifieri9823 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaLaurasiatheriaCetartiodactylaSuinaSuidaeSus
Proteomesi
  • UP000008227 Componenti: Chromosome 6

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Proteomic databases

PaxDbiI3LB32.
PRIDEiI3LB32.

Expressioni

Gene expression databases

BgeeiENSSSCG00000026038.

Interactioni

Protein-protein interaction databases

STRINGi9823.ENSSSCP00000021251.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini126 – 156Q_MOTIFInterPro annotationAdd BLAST31
Domaini159 – 351Helicase ATP-bindingInterPro annotationAdd BLAST193
Domaini377 – 536Helicase C-terminalInterPro annotationAdd BLAST160

Motif

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Motifi126 – 156Q motifPROSITE-ProRule annotationAdd BLAST31

Phylogenomic databases

eggNOGiKOG0330. Eukaryota.
ENOG410XQU7. LUCA.
GeneTreeiENSGT00730000110914.
InParanoidiI3LB32.
KOiK20096.
OMAiLHCIMPH.
OrthoDBiEOG091G06DC.
TreeFamiTF324977.

Family and domain databases

CDDicd00079. HELICc. 1 hit.
InterProiView protein in InterPro
IPR011545. DEAD/DEAH_box_helicase_dom.
IPR014001. Helicase_ATP-bd.
IPR001650. Helicase_C.
IPR027417. P-loop_NTPase.
IPR014014. RNA_helicase_DEAD_Q_motif.
PfamiView protein in Pfam
PF00270. DEAD. 1 hit.
PF00271. Helicase_C. 1 hit.
SMARTiView protein in SMART
SM00487. DEXDc. 1 hit.
SM00490. HELICc. 1 hit.
SUPFAMiSSF52540. SSF52540. 1 hit.
PROSITEiView protein in PROSITE
PS51192. HELICASE_ATP_BIND_1. 1 hit.
PS51194. HELICASE_CTER. 1 hit.
PS51195. Q_MOTIF. 1 hit.

Sequencei

Sequence statusi: Complete.

I3LB32-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MALARQLRLL SLVTRLHLAP RRDLTVRGPD EPLPVVRIPR ALQRRQEQRQ
60 70 80 90 100
RGQQGPPRPV LVRPGQLLIS ARRPELNQPA RLTLGRWEPA PLASRGWKNR
110 120 130 140 150
RARQDHFSIE RKQQEAPALR NLSSKDSFAD LGLEPRVLSA LQEAAPEVVR
160 170 180 190 200
PTTVQSSTIP PLLGGRHILC AAETGSGKTL GYMLPLLQRL LGQPSLDSCR
210 220 230 240 250
IPAPRGLVLV PSRELAEQVR AVAQPLGSSL GLQVRELGGG HGMSRIRLQL
260 270 280 290 300
SKQPPADVLV ATPGALWKGL KSQLISLEQL SFLVLDEADT LLDESFLELV
310 320 330 340 350
DYILEKSHIA EGPADLKDPF NPKAQLVLVG ATFPEGVSQL LSKAACLDSL
360 370 380 390 400
TTITSSKLHC IMPHVKQTFM RLKGAEKVTE LVQILKQHDR AYRTGSAGTV
410 420 430 440 450
LVFCNSSSTV NWLGYILDDH KIQHLRLQGQ MPASMRAGIF QSFQRGSQDI
460 470 480 490 500
LLCTDIASRG LDSTQVELVI NYDFPLTLQD YIHRAGRVGR VGSKVPGTVI
510 520 530 540
SFVTHPWDVS LVQKIELAAR RRRSLPGLGS SVREPLPQQT
Length:540
Mass (Da):59,553
Last modified:July 11, 2012 - v1
Checksum:i73F60AF8B8E490BA
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AEMK02000040 Genomic DNA. No translation available.
RefSeqiXP_003355824.1. XM_003355776.3.
UniGeneiSsc.48892.

Genome annotation databases

EnsembliENSSSCT00000027762; ENSSSCP00000021251; ENSSSCG00000026038.
GeneIDi100621490.
KEGGissc:100621490.

Similar proteinsi

Entry informationi

Entry nameiI3LB32_PIG
AccessioniPrimary (citable) accession number: I3LB32
Entry historyiIntegrated into UniProtKB/TrEMBL: July 11, 2012
Last sequence update: July 11, 2012
Last modified: October 25, 2017
This is version 39 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteomeImported