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I2FDN7

- I2FDN7_HELCP

UniProt

I2FDN7 - I2FDN7_HELCP

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Protein
Submitted name: DNA ligase
Gene
HCN_1808
Organism
Helicobacter cinaedi (strain PAGU611)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro
Complete GO annotation...

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciHCIN1172562:GLDZ-1851-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligaseImported
Gene namesi
Ordered Locus Names:HCN_1808Imported
OrganismiHelicobacter cinaedi (strain PAGU611)Imported
Taxonomic identifieri1172562 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaEpsilonproteobacteriaCampylobacteralesHelicobacteraceaeHelicobacter
ProteomesiUP000001956: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK01971.
OMAiSLVTYRY.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

I2FDN7-1 [UniParc]FASTAAdd to Basket

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MLLSEFEKRQ ANSQWLVSEK LDGVRGLWNG QKMYFRSGKP MNLPSEFVKD    50
FPPFALDGEL YSPKLHFSQI ISILKNPQKQ NEILELKFYV FDVPHSAKDS 100
LTQRLDELRT YLKSKPNVYI EIIPQRLMQG QDSIDRELQA VVDNGGEGLV 150
LRTPNMPYQK GRSKYDFKLK TRQDAECKVI GHTQGKGKYD SMLGAIICEY 200
NGKNFKIGSG LSDTLRHNPP PIGSIISFKF QGLTHNGTPR FPTFWRIKQE 250
E 251
Length:251
Mass (Da):28,845
Last modified:July 11, 2012 - v1
Checksum:i986AFDEB1AF9BD2F
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AP012344 Genomic DNA. Translation: BAM12975.1.
RefSeqiWP_014667311.1. NC_017761.1.
YP_006236086.1. NC_017761.1.

Genome annotation databases

EnsemblBacteriaiBAM12975; BAM12975; HCN_1808.
GeneIDi12764972.
KEGGihcp:HCN_1808.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AP012344 Genomic DNA. Translation: BAM12975.1 .
RefSeqi WP_014667311.1. NC_017761.1.
YP_006236086.1. NC_017761.1.

3D structure databases

ModBasei Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai BAM12975 ; BAM12975 ; HCN_1808 .
GeneIDi 12764972.
KEGGi hcp:HCN_1808.

Phylogenomic databases

KOi K01971.
OMAi SLVTYRY.

Enzyme and pathway databases

BioCyci HCIN1172562:GLDZ-1851-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
PROSITEi PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete genome sequence of Helicobacter cinaedi strain PAGU611 isolated from human bacteremia."
    Goto T., Ogura Y., Hirakawa H., Tomida J., Morita Y., Akaike T., Hayashi T., Kawamura Y.
    Submitted (APR-2012) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: PAGU611.

Entry informationi

Entry nameiI2FDN7_HELCP
AccessioniPrimary (citable) accession number: I2FDN7
Entry historyi
Integrated into UniProtKB/TrEMBL: July 11, 2012
Last sequence update: July 11, 2012
Last modified: September 3, 2014
This is version 12 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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