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Protein
Submitted name:

DNA ligase

Gene

HCN_1808

Organism
Helicobacter cinaedi (strain PAGU611)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciHCIN1172562:GLDZ-1851-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligaseImported
Gene namesi
Ordered Locus Names:HCN_1808Imported
OrganismiHelicobacter cinaedi (strain PAGU611)Imported
Taxonomic identifieri1172562 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaEpsilonproteobacteriaCampylobacteralesHelicobacteraceaeHelicobacter
ProteomesiUP000001956: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK10747.
OMAiVRGYWDG.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

I2FDN7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLLSEFEKRQ ANSQWLVSEK LDGVRGLWNG QKMYFRSGKP MNLPSEFVKD
60 70 80 90 100
FPPFALDGEL YSPKLHFSQI ISILKNPQKQ NEILELKFYV FDVPHSAKDS
110 120 130 140 150
LTQRLDELRT YLKSKPNVYI EIIPQRLMQG QDSIDRELQA VVDNGGEGLV
160 170 180 190 200
LRTPNMPYQK GRSKYDFKLK TRQDAECKVI GHTQGKGKYD SMLGAIICEY
210 220 230 240 250
NGKNFKIGSG LSDTLRHNPP PIGSIISFKF QGLTHNGTPR FPTFWRIKQE

E
Length:251
Mass (Da):28,845
Last modified:July 11, 2012 - v1
Checksum:i986AFDEB1AF9BD2F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP012344 Genomic DNA. Translation: BAM12975.1.
RefSeqiWP_014667311.1. NC_017761.1.
YP_006236086.1. NC_017761.1.

Genome annotation databases

EnsemblBacteriaiBAM12975; BAM12975; HCN_1808.
GeneIDi12764972.
KEGGihcp:HCN_1808.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP012344 Genomic DNA. Translation: BAM12975.1.
RefSeqiWP_014667311.1. NC_017761.1.
YP_006236086.1. NC_017761.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAM12975; BAM12975; HCN_1808.
GeneIDi12764972.
KEGGihcp:HCN_1808.

Phylogenomic databases

KOiK10747.
OMAiVRGYWDG.

Enzyme and pathway databases

BioCyciHCIN1172562:GLDZ-1851-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete genome sequence of Helicobacter cinaedi strain PAGU611 isolated from human bacteremia."
    Goto T., Ogura Y., Hirakawa H., Tomida J., Morita Y., Akaike T., Hayashi T., Kawamura Y.
    Submitted (APR-2012) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: PAGU611Imported.

Entry informationi

Entry nameiI2FDN7_HELCP
AccessioniPrimary (citable) accession number: I2FDN7
Entry historyi
Integrated into UniProtKB/TrEMBL: July 11, 2012
Last sequence update: July 11, 2012
Last modified: March 4, 2015
This is version 16 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.