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I2FDN7

- I2FDN7_HELCP

UniProt

I2FDN7 - I2FDN7_HELCP

Protein
Submitted name:

DNA ligase

Gene

HCN_1808

Organism
Helicobacter cinaedi (strain PAGU611)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 13 (01 Oct 2014)
      Sequence version 1 (11 Jul 2012)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciHCIN1172562:GLDZ-1851-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA ligaseImported
    Gene namesi
    Ordered Locus Names:HCN_1808Imported
    OrganismiHelicobacter cinaedi (strain PAGU611)Imported
    Taxonomic identifieri1172562 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaEpsilonproteobacteriaCampylobacteralesHelicobacteraceaeHelicobacter
    ProteomesiUP000001956: Chromosome

    Family & Domainsi

    Phylogenomic databases

    KOiK01971.
    OMAiSLVTYRY.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR029319. DNA_ligase_OB.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF01068. DNA_ligase_A_M. 1 hit.
    PF14743. DNA_ligase_OB_2. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    PROSITEiPS00333. DNA_LIGASE_A2. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    I2FDN7-1 [UniParc]FASTAAdd to Basket

    « Hide

    MLLSEFEKRQ ANSQWLVSEK LDGVRGLWNG QKMYFRSGKP MNLPSEFVKD    50
    FPPFALDGEL YSPKLHFSQI ISILKNPQKQ NEILELKFYV FDVPHSAKDS 100
    LTQRLDELRT YLKSKPNVYI EIIPQRLMQG QDSIDRELQA VVDNGGEGLV 150
    LRTPNMPYQK GRSKYDFKLK TRQDAECKVI GHTQGKGKYD SMLGAIICEY 200
    NGKNFKIGSG LSDTLRHNPP PIGSIISFKF QGLTHNGTPR FPTFWRIKQE 250
    E 251
    Length:251
    Mass (Da):28,845
    Last modified:July 11, 2012 - v1
    Checksum:i986AFDEB1AF9BD2F
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP012344 Genomic DNA. Translation: BAM12975.1.
    RefSeqiWP_014667311.1. NC_017761.1.
    YP_006236086.1. NC_017761.1.

    Genome annotation databases

    EnsemblBacteriaiBAM12975; BAM12975; HCN_1808.
    GeneIDi12764972.
    KEGGihcp:HCN_1808.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP012344 Genomic DNA. Translation: BAM12975.1 .
    RefSeqi WP_014667311.1. NC_017761.1.
    YP_006236086.1. NC_017761.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai BAM12975 ; BAM12975 ; HCN_1808 .
    GeneIDi 12764972.
    KEGGi hcp:HCN_1808.

    Phylogenomic databases

    KOi K01971.
    OMAi SLVTYRY.

    Enzyme and pathway databases

    BioCyci HCIN1172562:GLDZ-1851-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR029319. DNA_ligase_OB.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF01068. DNA_ligase_A_M. 1 hit.
    PF14743. DNA_ligase_OB_2. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    PROSITEi PS00333. DNA_LIGASE_A2. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete genome sequence of Helicobacter cinaedi strain PAGU611 isolated from human bacteremia."
      Goto T., Ogura Y., Hirakawa H., Tomida J., Morita Y., Akaike T., Hayashi T., Kawamura Y.
      Submitted (APR-2012) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: PAGU611Imported.

    Entry informationi

    Entry nameiI2FDN7_HELCP
    AccessioniPrimary (citable) accession number: I2FDN7
    Entry historyi
    Integrated into UniProtKB/TrEMBL: July 11, 2012
    Last sequence update: July 11, 2012
    Last modified: October 1, 2014
    This is version 13 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3