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I2DT64 (I2DT64_9BURK) Unreviewed, UniProtKB/TrEMBL

Last modified October 16, 2013. Version 10. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesRecommended name:
Beta-galactosidase PIRNR PIRNR001084

Short name=Beta-gal PIRNR PIRNR001084
EC=3.2.1.23 PIRNR PIRNR001084
Gene names
ORF Names:MYA_3481 EMBL AFJ87840.1
OrganismBurkholderia sp. KJ006 EMBL AFJ87840.1
Taxonomic identifier416344 [NCBI]
Taxonomic lineageBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeBurkholderia

Protein attributes

Sequence length659 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

Hydrolysis of terminal non-reducing beta-D-galactose residues in beta-D-galactosides. PIRNR PIRNR001084

Sequence similarities

Belongs to the glycosyl hydrolase 42 family. PIRNR PIRNR001084

Ontologies

Keywords
   Molecular functionGlycosidase PIRNR PIRNR001084
Hydrolase
Gene Ontology (GO)
   Biological_processcarbohydrate metabolic process

Inferred from electronic annotation. Source: InterPro

   Cellular_componentbeta-galactosidase complex

Inferred from electronic annotation. Source: InterPro

   Molecular_functionbeta-galactosidase activity

Inferred from electronic annotation. Source: UniProtKB-EC

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site1421Proton donor By similarity
Active site3131Nucleophile By similarity
Binding site1031Substrate By similarity PIRSR PIRSR001084-2
Binding site1411Substrate By similarity PIRSR PIRSR001084-2
Binding site3211Substrate By similarity PIRSR PIRSR001084-2

Sequences

Sequence LengthMass (Da)Tools
I2DT64 [UniParc].

Last modified July 11, 2012. Version 1.
Checksum: DC105922D156155C

FASTA65973,771
        10         20         30         40         50         60 
MRLGVCYYPE HWPESMWADD ARRMKALGIV QVRIGEFAWS RIEPSPGEYA WGWLDRAIDA 

        70         80         90        100        110        120 
LGAAGLEIVM CTPTATPPKW LVDRHPDILA IGADGLPRKF GSRRHYDFSS PTYLEASRRI 

       130        140        150        160        170        180 
CTAVAERYGR HPAVRYWQTD NELGCHQTVV SYSPAALLRF RAWLKARYGT IDALNRAWGT 

       190        200        210        220        230        240 
VFWSMEYRHF DEVDAPVGTV TEAHPSHRLD YRRFASDELA RYHRMQVDVI RAHSPGRPVA 

       250        260        270        280        290        300 
HNFMQLFTEF DHYAVARDLD VATWDSYPLG ALEELWFAPD VKARWLRTGH PDFASFNHDL 

       310        320        330        340        350        360 
YRGMSKQPFW VMEQQPGPVN WAHWNPAPLP GMVRLWSWEA FAHGAGCVSY FRWRQAPFAQ 

       370        380        390        400        410        420 
EQMHAGLHTP DDRLDEGGRE AQRVAGEIAA VLDADADGAV RAPVALVFDY EAKWLLEVQP 

       430        440        450        460        470        480 
QGADFHYPRF AFEYYSALRA LGLDVDIVSA HAPLDGYRLV VVPPLPVVPD DFAARLAASG 

       490        500        510        520        530        540 
AHAVFGPRTG SKTVDLQIPP ALPPGPLASL LPLRVWRVES LRPNVTERID GALRDGSPLS 

       550        560        570        580        590        600 
GDARHWRDLV ELHDDARSVV HARFADGHPA WVSHGAFHYW AALFDDATTL RGFADVAAEA 

       610        620        630        640        650 
GLTPTPLGDD VRVSRRGGLT YVFNYGSTPH TIDAVAPSAF VVGAAQVEPQ GVAVYRSRP 

« Hide

References

[1]"Complete Genome Sequence of the Endophytic Bacterium Burkholderia sp. Strain KJ006."
Kwak M.J., Song J.Y., Kim S.Y., Jeong H., Kang S.G., Kim B.K., Kwon S.K., Lee C.H., Yu D.S., Park S.H., Kim J.F.
J. Bacteriol. 194:4432-4433(2012) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: KJ006 EMBL AFJ87840.1.
[2]Kwak M.-J., Song J.Y., Kim S.-Y., Jeong H., Kim B.K., Kwon S.-K., Lee C.H., Yu D.S., Park S.-H., Kim J.F.
Submitted (MAY-2012) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: KJ006 EMBL AFJ87840.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP003515 Genomic DNA. Translation: AFJ87840.1.
RefSeqYP_006334571.1. NC_017921.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAFJ87840; AFJ87840; MYA_3481.
GeneID12970511.
KEGGbuk:MYA_3481.

Phylogenomic databases

KOK12308.

Enzyme and pathway databases

BioCycBSP416344:GL9Z-3558-MONOMER.

Family and domain databases

Gene3D2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProIPR013738. Beta_galactosidase_Trimer.
IPR013780. Glyco_hydro_13_b.
IPR003476. Glyco_hydro_42.
IPR013529. Glyco_hydro_42_N.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PfamPF02449. Glyco_hydro_42. 1 hit.
PF08532. Glyco_hydro_42M. 1 hit.
[Graphical view]
PIRSFPIRSF001084. B-galactosidase. 1 hit.
SUPFAMSSF51445. SSF51445. 1 hit.
ProtoNetSearch...

Entry information

Entry nameI2DT64_9BURK
AccessionPrimary (citable) accession number: I2DT64
Entry history
Integrated into UniProtKB/TrEMBL: July 11, 2012
Last sequence update: July 11, 2012
Last modified: October 16, 2013
This is version 10 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)