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I2DPS2 (I2DPS2_9BURK) Unreviewed, UniProtKB/TrEMBL

Last modified May 29, 2013. Version 10. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein names
Gene names
ORF Names:MYA_2288 EMBL AFJ86648.1
OrganismBurkholderia sp. KJ006 EMBL AFJ86648.1
Taxonomic identifier416344 [NCBI]
Taxonomic lineageBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeBurkholderia

Protein attributes

Sequence length742 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Cofactor

Binds 1 magnesium or manganese ion per subunit By similarity. PIRSR PIRSR009407-3

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Region133 – 1408Substrate binding By similarity PIRSR PIRSR009407-2

Sites

Metal binding3511Magnesium or manganese By similarity PIRSR PIRSR009407-3
Metal binding5491Magnesium or manganese By similarity PIRSR PIRSR009407-3
Metal binding5531Magnesium or manganese By similarity PIRSR PIRSR009407-3
Binding site1461Substrate By similarity PIRSR PIRSR009407-2
Binding site5481Substrate By similarity PIRSR PIRSR009407-2
Site2561Critical for catalysis By similarity
Site4211Critical for catalysis By similarity

Sequences

Sequence LengthMass (Da)Tools
I2DPS2 [UniParc].

Last modified July 11, 2012. Version 1.
Checksum: 3454ED5518C66C8C

FASTA74280,022
        10         20         30         40         50         60 
MSTSPKIIYT LTDEAPALAT YSLLPIVKAF THSSGVAVET RDISLAGRII AAFADVLPPE 

        70         80         90        100        110        120 
QKGSDDLADL GQLTLKPEAN IIKLPNISAS VPQLKAAIAE LQAQGYKLPA YPEEPSTDEE 

       130        140        150        160        170        180 
KAVKARYDKI KGSAVNPVLR EGNSDRRAPL SVKNYARKHP HKMGAWKPTS KSHVAHMTDG 

       190        200        210        220        230        240 
DFYGSEKSAL IADAGSVKIE LTTTDGVKKV LKEKTAVKAG EVIDASVMSR KALRSFIEAQ 

       250        260        270        280        290        300 
IADAKAQDVL FSVHLKATMM KVSDPIMFGH FVSVFYGDVL AKHADVLAQA GFNPNNGIGD 

       310        320        330        340        350        360 
LYARLKDLPA DTREAIEADI KAEYAVRPRL AMVNSDKGIT NLHVPSDVIV DASMPAMIRD 

       370        380        390        400        410        420 
SGGMWGVDGQ LHDAKAVIPD RCYAGVYQAV IEDCKQHGAF DPVTMGSVPN VGLMAQAAEE 

       430        440        450        460        470        480 
YGSHDKTFLI PADGVVRVTD EAGNVLLEHA VESGDIWRMC QTKDAPVQDW VKLAVNRARA 

       490        500        510        520        530        540 
TGAPAVFWLD PVRAHDAQII AKVERYLKDH DTNGLDIRIM TPVDATRFSL ERIRAGKDTI 

       550        560        570        580        590        600 
SVTGNVLRDY LTDLFPIMEL GTSAKMLSIV PLMAGGGMFE TGAGGSAPKH VQQFVEEGFL 

       610        620        630        640        650        660 
RWDSLGEFLA LAASLEHLGN AYHNPKALVL AKTLDRATGK FLDENRSPAR KVGGIDNRGS 

       670        680        690        700        710        720 
HFYLCMYWAQ ALAEQTEDAA LKAQFEGVAK SLADNEARIL EELGAAQGKA QAIGGYYRPD 

       730        740 
VALTSQAMRP SATLNAIVDA VA 

« Hide

References

[1]"Complete Genome Sequence of the Endophytic Bacterium Burkholderia sp. Strain KJ006."
Kwak M.J., Song J.Y., Kim S.Y., Jeong H., Kang S.G., Kim B.K., Kwon S.K., Lee C.H., Yu D.S., Park S.H., Kim J.F.
J. Bacteriol. 194:4432-4433(2012) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: KJ006 EMBL AFJ86648.1.
[2]Kwak M.-J., Song J.Y., Kim S.-Y., Jeong H., Kim B.K., Kwon S.-K., Lee C.H., Yu D.S., Park S.-H., Kim J.F.
Submitted (MAY-2012) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: KJ006 EMBL AFJ86648.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP003514 Genomic DNA. Translation: AFJ86648.1.
RefSeqYP_006333379.1. NC_017920.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAFJ86648; AFJ86648; MYA_2288.
GeneID12968695.
KEGGbuk:MYA_2288.

Phylogenomic databases

KOK00031.

Enzyme and pathway databases

BioCycBSP416344:GL9Z-2355-MONOMER.

Family and domain databases

Gene3D3.40.718.10. 3 hits.
InterProIPR004436. Isocitrate_DH_NADP_mono.
IPR024084. IsoPropMal-DH-like_dom.
[Graphical view]
PfamPF03971. IDH. 1 hit.
[Graphical view]
PIRSFPIRSF009407. IDH_monmr. 1 hit.
TIGRFAMsTIGR00178. monomer_idh. 1 hit.
ProtoNetSearch...

Entry information

Entry nameI2DPS2_9BURK
AccessionPrimary (citable) accession number: I2DPS2
Entry history
Integrated into UniProtKB/TrEMBL: July 11, 2012
Last sequence update: July 11, 2012
Last modified: May 29, 2013
This is version 10 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)