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I2C456

- I2C456_BACAM

UniProt

I2C456 - I2C456_BACAM

Protein
Submitted name:

ATP-dependent DNA ligase

Gene

ligD

Organism
Bacillus amyloliquefaciens Y2
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 12 (01 Oct 2014)
      Sequence version 1 (11 Jul 2012)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: UniProtKB-EC

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciBAMY1126211:GL8D-1416-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP-dependent DNA ligaseImported (EC:6.5.1.1Imported)
    Gene namesi
    Name:ligDImported
    ORF Names:MUS_1417Imported
    OrganismiBacillus amyloliquefaciens Y2Imported
    Taxonomic identifieri1126211 [NCBI]
    Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
    ProteomesiUP000002878: Chromosome

    Family & Domainsi

    Phylogenomic databases

    KOiK01971.

    Family and domain databases

    InterProiIPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014145. LigD_pol.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view]
    TIGRFAMsiTIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    I2C456-1 [UniParc]FASTAAdd to Basket

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    MVLTMQPILT SVPPEGSEWR YEVKYDGFRC LLRIDESGVT LTSRNGQTLT    50
    NQFPEITAFA ARCFQHMKDR FPITLDGELV YLINPYRADF EHLQIRGRLK 100
    RTEAIESTAD RRPCRFLAFD LLVLEGAGTV SLPYVKRKRA LSKLFKEANL 150
    PACPHHLAEE AIQYIPEHTD FDALWAKVVR HDGEGVVAKR ASSGWAENKR 200
    SPDWQKYKHM KTAHVLLTGF NPKNGYVTAS VLKDGTAVPI ASVSHGMQAE 250
    EKNAVRTIME THGKKLPSGE YILEPSICMT VQYLTILQDT LREVSFVSFQ 300
    FEMDWTECTY QQLILRSKTL PPKLQFTSLD KIVFKKREKT KADFLSYMVK 350
    MSDFLMPFLK DRAVTVIRYP HGAPGESFFQ KNKPDYTPDF VSSVFDGSHE 400
    HIVCSSIPSL LWLANQLALE FHVPFQTVHS ERPAEIVIDL DPPSRNDFPM 450
    AVEAAHVLKQ LFDSFSITSF PKLSGNKGIQ LYIPLSPEAF SYEETRAFTM 500
    LIADYCVRTR PDLFTTERFI KNRNGRLYLD YLQHAEGKTI IAPYSTRGNE 550
    LGTVAAPLYW SEVNSSLTPD DYTIDTVVNR VRTEGDPFYD FYRNPQDGPL 600
    SIVLEQIKRK S 611
    Length:611
    Mass (Da):69,763
    Last modified:July 11, 2012 - v1
    Checksum:iD6913D637CB80A18
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP003332 Genomic DNA. Translation: AFJ61430.1.
    RefSeqiWP_014721064.1. NC_017912.1.
    YP_006328155.1. NC_017912.1.

    Genome annotation databases

    EnsemblBacteriaiAFJ61430; AFJ61430; MUS_1417.
    GeneIDi12966135.
    KEGGibqy:MUS_1417.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP003332 Genomic DNA. Translation: AFJ61430.1 .
    RefSeqi WP_014721064.1. NC_017912.1.
    YP_006328155.1. NC_017912.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AFJ61430 ; AFJ61430 ; MUS_1417 .
    GeneIDi 12966135.
    KEGGi bqy:MUS_1417.

    Phylogenomic databases

    KOi K01971.

    Enzyme and pathway databases

    BioCyci BAMY1126211:GL8D-1416-MONOMER.

    Family and domain databases

    InterProi IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014145. LigD_pol.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view ]
    TIGRFAMsi TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome sequence of the plant growth promoting strain Bacillus amyloliquefaciens subsp. plantarum B9601-Y2 and expression of mersacidin and other secondary metabolites."
      He P., Hao K., Blom J., Ruckert C., Vater J., Mao Z., Wu Y., Hou M., He P., He Y., Borriss R.
      J. Biotechnol. 164:281-291(2012) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: Y2Imported.

    Entry informationi

    Entry nameiI2C456_BACAM
    AccessioniPrimary (citable) accession number: I2C456
    Entry historyi
    Integrated into UniProtKB/TrEMBL: July 11, 2012
    Last sequence update: July 11, 2012
    Last modified: October 1, 2014
    This is version 12 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3