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Protein
Submitted name:

ATP-dependent DNA ligase

Gene

ligD

Organism
Bacillus amyloliquefaciens Y2
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciBAMY1126211:GL8D-1416-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligaseImported (EC:6.5.1.1Imported)
Gene namesi
Name:ligDImported
ORF Names:MUS_1417Imported
OrganismiBacillus amyloliquefaciens Y2Imported
Taxonomic identifieri1126211 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
ProteomesiUP000002878 Componenti: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. LigD_ligase_dom.
IPR014145. LigD_pol_dom.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

I2C456-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVLTMQPILT SVPPEGSEWR YEVKYDGFRC LLRIDESGVT LTSRNGQTLT
60 70 80 90 100
NQFPEITAFA ARCFQHMKDR FPITLDGELV YLINPYRADF EHLQIRGRLK
110 120 130 140 150
RTEAIESTAD RRPCRFLAFD LLVLEGAGTV SLPYVKRKRA LSKLFKEANL
160 170 180 190 200
PACPHHLAEE AIQYIPEHTD FDALWAKVVR HDGEGVVAKR ASSGWAENKR
210 220 230 240 250
SPDWQKYKHM KTAHVLLTGF NPKNGYVTAS VLKDGTAVPI ASVSHGMQAE
260 270 280 290 300
EKNAVRTIME THGKKLPSGE YILEPSICMT VQYLTILQDT LREVSFVSFQ
310 320 330 340 350
FEMDWTECTY QQLILRSKTL PPKLQFTSLD KIVFKKREKT KADFLSYMVK
360 370 380 390 400
MSDFLMPFLK DRAVTVIRYP HGAPGESFFQ KNKPDYTPDF VSSVFDGSHE
410 420 430 440 450
HIVCSSIPSL LWLANQLALE FHVPFQTVHS ERPAEIVIDL DPPSRNDFPM
460 470 480 490 500
AVEAAHVLKQ LFDSFSITSF PKLSGNKGIQ LYIPLSPEAF SYEETRAFTM
510 520 530 540 550
LIADYCVRTR PDLFTTERFI KNRNGRLYLD YLQHAEGKTI IAPYSTRGNE
560 570 580 590 600
LGTVAAPLYW SEVNSSLTPD DYTIDTVVNR VRTEGDPFYD FYRNPQDGPL
610
SIVLEQIKRK S
Length:611
Mass (Da):69,763
Last modified:July 11, 2012 - v1
Checksum:iD6913D637CB80A18
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003332 Genomic DNA. Translation: AFJ61430.1.
RefSeqiYP_006328155.1. NC_017912.1.

Genome annotation databases

EnsemblBacteriaiAFJ61430; AFJ61430; MUS_1417.
KEGGibqy:MUS_1417.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003332 Genomic DNA. Translation: AFJ61430.1.
RefSeqiYP_006328155.1. NC_017912.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAFJ61430; AFJ61430; MUS_1417.
KEGGibqy:MUS_1417.

Phylogenomic databases

KOiK01971.

Enzyme and pathway databases

BioCyciBAMY1126211:GL8D-1416-MONOMER.

Family and domain databases

InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. LigD_ligase_dom.
IPR014145. LigD_pol_dom.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Genome sequence of the plant growth promoting strain Bacillus amyloliquefaciens subsp. plantarum B9601-Y2 and expression of mersacidin and other secondary metabolites."
    He P., Hao K., Blom J., Ruckert C., Vater J., Mao Z., Wu Y., Hou M., He P., He Y., Borriss R.
    J. Biotechnol. 164:281-291(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Y2Imported.

Entry informationi

Entry nameiI2C456_BACAM
AccessioniPrimary (citable) accession number: I2C456
Entry historyi
Integrated into UniProtKB/TrEMBL: July 11, 2012
Last sequence update: July 11, 2012
Last modified: April 29, 2015
This is version 16 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.