I2C456 (I2C456_BACAM) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
ATP-dependent DNA ligase EMBL AFJ61430.1
EC=6.5.1.1 EMBL AFJ61430.1

Gene names

Name:	ligD EMBL AFJ61430.1
ORF Names:	MUS_1417 EMBL AFJ61430.1

Organism

Bacillus amyloliquefaciens Y2 EMBL AFJ61430.1

Taxonomic identifier

1126211 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Firmicutes › Bacilli › Bacillales › Bacillaceae › Bacillus › Bacillus subtilis group › Bacillus amyloliquefaciens

Protein attributes

Sequence length	611 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL AFJ61430.1
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	I2C456 [UniParc]. Last modified July 11, 2012. Version 1. Checksum: D6913D637CB80A18	FASTA	611	69,763
	10 20 30 40 50 60 MVLTMQPILT SVPPEGSEWR YEVKYDGFRC LLRIDESGVT LTSRNGQTLT NQFPEITAFA 70 80 90 100 110 120 ARCFQHMKDR FPITLDGELV YLINPYRADF EHLQIRGRLK RTEAIESTAD RRPCRFLAFD 130 140 150 160 170 180 LLVLEGAGTV SLPYVKRKRA LSKLFKEANL PACPHHLAEE AIQYIPEHTD FDALWAKVVR 190 200 210 220 230 240 HDGEGVVAKR ASSGWAENKR SPDWQKYKHM KTAHVLLTGF NPKNGYVTAS VLKDGTAVPI 250 260 270 280 290 300 ASVSHGMQAE EKNAVRTIME THGKKLPSGE YILEPSICMT VQYLTILQDT LREVSFVSFQ 310 320 330 340 350 360 FEMDWTECTY QQLILRSKTL PPKLQFTSLD KIVFKKREKT KADFLSYMVK MSDFLMPFLK 370 380 390 400 410 420 DRAVTVIRYP HGAPGESFFQ KNKPDYTPDF VSSVFDGSHE HIVCSSIPSL LWLANQLALE 430 440 450 460 470 480 FHVPFQTVHS ERPAEIVIDL DPPSRNDFPM AVEAAHVLKQ LFDSFSITSF PKLSGNKGIQ 490 500 510 520 530 540 LYIPLSPEAF SYEETRAFTM LIADYCVRTR PDLFTTERFI KNRNGRLYLD YLQHAEGKTI 550 560 570 580 590 600 IAPYSTRGNE LGTVAAPLYW SEVNSSLTPD DYTIDTVVNR VRTEGDPFYD FYRNPQDGPL 610 SIVLEQIKRK S

References

[1]

"Elucidating bio-control and plant multi-beneficial properties of Bacillus amyloliquefaciens Y2 with its Genome." Hao K., He P., Wu Y., Wang Z., Wu X., Yu X., Cheng Q., Yin J., Borriss R., Mao Z., He Y. Submitted (FEB-2012) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: Y2 EMBL AFJ61430.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP003332 Genomic DNA. Translation: AFJ61430.1.
RefSeq	YP_006328155.1. NC_017912.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AFJ61430; AFJ61430; MUS_1417.
GeneID	12966135.
KEGG	bqy:MUS_1417.
Phylogenomic databases
KO	K01971.
Family and domain databases
InterPro	IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR014146. DNA_pol_LigD_ligase_dom. IPR014145. LigD_pol. IPR014143. NHEJ_ligase_prk. [Graphical view]
Pfam	PF01068. DNA_ligase_A_M. 1 hit. [Graphical view]
TIGRFAMs	TIGR02778. ligD_pol. 1 hit. TIGR02779. NHEJ_ligase_lig. 1 hit. TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITE	PS00697. DNA_LIGASE_A1. 1 hit. PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

I2C456_BACAM

Accession

Primary (citable) accession number: I2C456

Entry history

Integrated into UniProtKB/TrEMBL:	July 11, 2012
Last sequence update:	July 11, 2012
Last modified:	April 3, 2013
This is version 6 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)