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I2C456 (I2C456_BACAM) Unreviewed, UniProtKB/TrEMBL

Last modified January 22, 2014. Version 10. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
EC=6.5.1.1 EMBL AFJ61430.1
Gene names
Name:ligD EMBL AFJ61430.1
ORF Names:MUS_1417 EMBL AFJ61430.1
OrganismBacillus amyloliquefaciens Y2 [Complete proteome] EMBL AFJ61430.1
Taxonomic identifier1126211 [NCBI]
Taxonomic lineageBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus

Protein attributes

Sequence length611 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL AFJ61430.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA ligation involved in DNA repair

Inferred from electronic annotation. Source: InterPro

DNA recombination

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: UniProtKB-EC

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
I2C456 [UniParc].

Last modified July 11, 2012. Version 1.
Checksum: D6913D637CB80A18

FASTA61169,763
        10         20         30         40         50         60 
MVLTMQPILT SVPPEGSEWR YEVKYDGFRC LLRIDESGVT LTSRNGQTLT NQFPEITAFA 

        70         80         90        100        110        120 
ARCFQHMKDR FPITLDGELV YLINPYRADF EHLQIRGRLK RTEAIESTAD RRPCRFLAFD 

       130        140        150        160        170        180 
LLVLEGAGTV SLPYVKRKRA LSKLFKEANL PACPHHLAEE AIQYIPEHTD FDALWAKVVR 

       190        200        210        220        230        240 
HDGEGVVAKR ASSGWAENKR SPDWQKYKHM KTAHVLLTGF NPKNGYVTAS VLKDGTAVPI 

       250        260        270        280        290        300 
ASVSHGMQAE EKNAVRTIME THGKKLPSGE YILEPSICMT VQYLTILQDT LREVSFVSFQ 

       310        320        330        340        350        360 
FEMDWTECTY QQLILRSKTL PPKLQFTSLD KIVFKKREKT KADFLSYMVK MSDFLMPFLK 

       370        380        390        400        410        420 
DRAVTVIRYP HGAPGESFFQ KNKPDYTPDF VSSVFDGSHE HIVCSSIPSL LWLANQLALE 

       430        440        450        460        470        480 
FHVPFQTVHS ERPAEIVIDL DPPSRNDFPM AVEAAHVLKQ LFDSFSITSF PKLSGNKGIQ 

       490        500        510        520        530        540 
LYIPLSPEAF SYEETRAFTM LIADYCVRTR PDLFTTERFI KNRNGRLYLD YLQHAEGKTI 

       550        560        570        580        590        600 
IAPYSTRGNE LGTVAAPLYW SEVNSSLTPD DYTIDTVVNR VRTEGDPFYD FYRNPQDGPL 

       610 
SIVLEQIKRK S 

« Hide

References

[1]"Genome sequence of the plant growth promoting strain Bacillus amyloliquefaciens subsp. plantarum B9601-Y2 and expression of mersacidin and other secondary metabolites."
He P., Hao K., Blom J., Ruckert C., Vater J., Mao Z., Wu Y., Hou M., He P., He Y., Borriss R.
J. Biotechnol. 164:281-291(2012) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: Y2 EMBL AFJ61430.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP003332 Genomic DNA. Translation: AFJ61430.1.
RefSeqYP_006328155.1. NC_017912.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAFJ61430; AFJ61430; MUS_1417.
GeneID12966135.
KEGGbqy:MUS_1417.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01971.

Enzyme and pathway databases

BioCycBAMY1126211:GL8D-1416-MONOMER.

Family and domain databases

InterProIPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014145. LigD_pol.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamPF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
TIGRFAMsTIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameI2C456_BACAM
AccessionPrimary (citable) accession number: I2C456
Entry history
Integrated into UniProtKB/TrEMBL: July 11, 2012
Last sequence update: July 11, 2012
Last modified: January 22, 2014
This is version 10 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)