I2BUW1 (I2BUW1_PSEFL) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
DNA ligase D EMBL AFJ58044.1

Gene names

Name:	ligD_2 EMBL AFJ58044.1
ORF Names:	PflA506_1430 EMBL AFJ58044.1

Organism

Pseudomonas fluorescens A506 EMBL AFJ58044.1

Taxonomic identifier

1037911 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Pseudomonadales › Pseudomonadaceae › Pseudomonas › Pseudomonas fluorescens group › Pseudomonas fluorescens

Protein attributes

Sequence length	853 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL AFJ58044.1
Gene Ontology (GO)
Biological_process	DNA recombination Inferred from electronic annotation. Source: InterPro DNA repair Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro DNA primase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	I2BUW1 [UniParc]. Last modified July 11, 2012. Version 1. Checksum: 4956B4C98457AFC1	FASTA	853	95,157
	10 20 30 40 50 60 MTDALNEYNK KRDFDATPEP SGAKKSTRKK KAEDHALQFC IQKHDASRLH YDFRIEIEGT 70 80 90 100 110 120 LKSWAVPKGP SLDPQVKRLA MEVEDHPLDY ATFEGNIPEG HYGAGDVIVW DRGIWKCIGD 130 140 150 160 170 180 PVESYKKGKL KFELEGEKLG GLWNLVRTHQ EGKSKPWFLI KHQDSAAKPE AEFDVVKELP 190 200 210 220 230 240 DSVLSDRTII PKKRGKQPKA KAVEEVPEPR KRAKTGKLTG AKPAPMPDLI KPQLATLVET 250 260 270 280 290 300 APAGDWRYEI KFDGYRMMAR IDNGEVKLFT RNGHDWTSKL PRQAEALASL ALQSAWLDGE 310 320 330 340 350 360 VIAADDEGVP SFQILQNAFE SGKSQAIVFY LFDMPYLNGV DLREVPVEER RAALAQVVER 370 380 390 400 410 420 SEDDIIRFSE DFGEEASDLL TSVCQMHMEG LIGKRAGSTY VSRRSDNWIK LKCKHRQEFV 430 440 450 460 470 480 VVGYSEPKGA RTSFGALLLG LHDKDSGELR YSGKVGTGFN ERTLRTILEQ LKPLETSKPA 490 500 510 520 530 540 VVNPPTGADA RGVHWLKPEL LAEVAYAEIT KDGSVRHSVF HGLRNDKPAK EITEETPVPA 550 560 570 580 590 600 SDVQGKKTKP AAKKKPVKAD PKPTSGKIRI THLDRVIDAS SGSTKMQLAE YYVSIADWIL 610 620 630 640 650 660 PTLHDRPIAL VRAPEGIAGE LFFQKNVERL PIPGIETVEG ESVMLINNAE ALVGAVQKST 670 680 690 700 710 720 IEFHSWNAKA PDLDRPDRFV LDLDPDPSLP WKSMVEATTL TLTILDELGL KSFVKTSGGK 730 740 750 760 770 780 GIHIVVPLTP KDDWETVKGF SQKIVQHMAK LIPDRFSAVS GPKNRVGKIF IDYLRNGKGA 790 800 810 820 830 840 TTINAYAART REGLPVSVPL FKEEVKEIKG ANIWNIHNLH ERLGELGEDP WKDYGKIKQT 850 ITADMRRMIG LKK

References

[1]

"Comparative Genomics of Plant-Associated Pseudomonas spp.: Insights into Diversity and Inheritance of Traits Involved in Multitrophic Interactions." Loper J.E., Hassan K.A., Mavrodi D.V., Davis E.W.II., Lim C.K., Shaffer B.T., Elbourne L.D., Stockwell V.O., Hartney S.L., Breakwell K., Henkels M.D., Tetu S.G., Rangel L.I., Kidarsa T.A., Wilson N.L., van de Mortel J.E., Song C., Blumhagen R. , Radune D., Hostetler J.B., Brinkac L.M., Durkin A.S., Kluepfel D.A., Wechter W.P., Anderson A.J., Kim Y.C., Pierson L.S.III., Pierson E.A., Lindow S.E., Kobayashi D.Y., Raaijmakers J.M., Weller D.M., Thomashow L.S., Allen A.E., Paulsen I.T. PLoS Genet. 8:E1002784-E1002784(2012) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: A506 EMBL AFJ58044.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP003041 Genomic DNA. Translation: AFJ58044.1.
RefSeq	YP_006322943.1. NC_017911.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AFJ58044; AFJ58044; PflA506_1430.
GeneID	12958145.
KEGG	pfc:PflA506_1430.
Phylogenomic databases
KO	K01971.
Enzyme and pathway databases
BioCyc	PFLU1037911:GLIS-1429-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR014146. DNA_pol_LigD_ligase_dom. IPR002755. DNA_primase_S. IPR014144. LigD_PE_domain. IPR014145. LigD_pol. IPR012340. NA-bd_OB-fold. IPR014143. NHEJ_ligase_prk. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF01896. DNA_primase_S. 1 hit. PF13298. LigD_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR02777. LigD_PE_dom. 1 hit. TIGR02778. ligD_pol. 1 hit. TIGR02779. NHEJ_ligase_lig. 1 hit. TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITE	PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

I2BUW1_PSEFL

Accession

Primary (citable) accession number: I2BUW1

Entry history

Integrated into UniProtKB/TrEMBL:	July 11, 2012
Last sequence update:	July 11, 2012
Last modified:	May 29, 2013
This is version 9 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)