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Protein
Submitted name:

LigD_2 protein

Gene

ligD_2

Organism
Pseudomonas fluorescens A506
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

BioCyciPFLU1037911:GLIS-1429-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
LigD_2 proteinImported
Gene namesi
Name:ligD_2Imported
ORF Names:PflA506_1430Imported
OrganismiPseudomonas fluorescens A506Imported
Taxonomic identifieri1037911 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
ProteomesiUP000002879 Componenti: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR002755. DNA_primase_S.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

I2BUW1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTDALNEYNK KRDFDATPEP SGAKKSTRKK KAEDHALQFC IQKHDASRLH
60 70 80 90 100
YDFRIEIEGT LKSWAVPKGP SLDPQVKRLA MEVEDHPLDY ATFEGNIPEG
110 120 130 140 150
HYGAGDVIVW DRGIWKCIGD PVESYKKGKL KFELEGEKLG GLWNLVRTHQ
160 170 180 190 200
EGKSKPWFLI KHQDSAAKPE AEFDVVKELP DSVLSDRTII PKKRGKQPKA
210 220 230 240 250
KAVEEVPEPR KRAKTGKLTG AKPAPMPDLI KPQLATLVET APAGDWRYEI
260 270 280 290 300
KFDGYRMMAR IDNGEVKLFT RNGHDWTSKL PRQAEALASL ALQSAWLDGE
310 320 330 340 350
VIAADDEGVP SFQILQNAFE SGKSQAIVFY LFDMPYLNGV DLREVPVEER
360 370 380 390 400
RAALAQVVER SEDDIIRFSE DFGEEASDLL TSVCQMHMEG LIGKRAGSTY
410 420 430 440 450
VSRRSDNWIK LKCKHRQEFV VVGYSEPKGA RTSFGALLLG LHDKDSGELR
460 470 480 490 500
YSGKVGTGFN ERTLRTILEQ LKPLETSKPA VVNPPTGADA RGVHWLKPEL
510 520 530 540 550
LAEVAYAEIT KDGSVRHSVF HGLRNDKPAK EITEETPVPA SDVQGKKTKP
560 570 580 590 600
AAKKKPVKAD PKPTSGKIRI THLDRVIDAS SGSTKMQLAE YYVSIADWIL
610 620 630 640 650
PTLHDRPIAL VRAPEGIAGE LFFQKNVERL PIPGIETVEG ESVMLINNAE
660 670 680 690 700
ALVGAVQKST IEFHSWNAKA PDLDRPDRFV LDLDPDPSLP WKSMVEATTL
710 720 730 740 750
TLTILDELGL KSFVKTSGGK GIHIVVPLTP KDDWETVKGF SQKIVQHMAK
760 770 780 790 800
LIPDRFSAVS GPKNRVGKIF IDYLRNGKGA TTINAYAART REGLPVSVPL
810 820 830 840 850
FKEEVKEIKG ANIWNIHNLH ERLGELGEDP WKDYGKIKQT ITADMRRMIG

LKK
Length:853
Mass (Da):95,157
Last modified:July 11, 2012 - v1
Checksum:i4956B4C98457AFC1
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003041 Genomic DNA. Translation: AFJ58044.1.
RefSeqiWP_014717386.1. NC_017911.1.

Genome annotation databases

EnsemblBacteriaiAFJ58044; AFJ58044; PflA506_1430.
KEGGipfc:PflA506_1430.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003041 Genomic DNA. Translation: AFJ58044.1.
RefSeqiWP_014717386.1. NC_017911.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAFJ58044; AFJ58044; PflA506_1430.
KEGGipfc:PflA506_1430.

Phylogenomic databases

KOiK01971.

Enzyme and pathway databases

BioCyciPFLU1037911:GLIS-1429-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR002755. DNA_primase_S.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: A506Imported.

Entry informationi

Entry nameiI2BUW1_PSEFL
AccessioniPrimary (citable) accession number: I2BUW1
Entry historyi
Integrated into UniProtKB/TrEMBL: July 11, 2012
Last sequence update: July 11, 2012
Last modified: July 22, 2015
This is version 20 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.