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I2BUW1

- I2BUW1_PSEFL

UniProt

I2BUW1 - I2BUW1_PSEFL

Protein
Submitted name:

DNA ligase D

Gene

ligD_2

Organism
Pseudomonas fluorescens A506
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 15 (01 Oct 2014)
      Sequence version 1 (11 Jul 2012)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro
    3. DNA primase activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciPFLU1037911:GLIS-1429-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA ligase DImported
    Gene namesi
    Name:ligD_2Imported
    ORF Names:PflA506_1430Imported
    OrganismiPseudomonas fluorescens A506Imported
    Taxonomic identifieri1037911 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
    ProteomesiUP000002879: Chromosome

    Family & Domainsi

    Phylogenomic databases

    KOiK01971.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    I2BUW1-1 [UniParc]FASTAAdd to Basket

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    MTDALNEYNK KRDFDATPEP SGAKKSTRKK KAEDHALQFC IQKHDASRLH    50
    YDFRIEIEGT LKSWAVPKGP SLDPQVKRLA MEVEDHPLDY ATFEGNIPEG 100
    HYGAGDVIVW DRGIWKCIGD PVESYKKGKL KFELEGEKLG GLWNLVRTHQ 150
    EGKSKPWFLI KHQDSAAKPE AEFDVVKELP DSVLSDRTII PKKRGKQPKA 200
    KAVEEVPEPR KRAKTGKLTG AKPAPMPDLI KPQLATLVET APAGDWRYEI 250
    KFDGYRMMAR IDNGEVKLFT RNGHDWTSKL PRQAEALASL ALQSAWLDGE 300
    VIAADDEGVP SFQILQNAFE SGKSQAIVFY LFDMPYLNGV DLREVPVEER 350
    RAALAQVVER SEDDIIRFSE DFGEEASDLL TSVCQMHMEG LIGKRAGSTY 400
    VSRRSDNWIK LKCKHRQEFV VVGYSEPKGA RTSFGALLLG LHDKDSGELR 450
    YSGKVGTGFN ERTLRTILEQ LKPLETSKPA VVNPPTGADA RGVHWLKPEL 500
    LAEVAYAEIT KDGSVRHSVF HGLRNDKPAK EITEETPVPA SDVQGKKTKP 550
    AAKKKPVKAD PKPTSGKIRI THLDRVIDAS SGSTKMQLAE YYVSIADWIL 600
    PTLHDRPIAL VRAPEGIAGE LFFQKNVERL PIPGIETVEG ESVMLINNAE 650
    ALVGAVQKST IEFHSWNAKA PDLDRPDRFV LDLDPDPSLP WKSMVEATTL 700
    TLTILDELGL KSFVKTSGGK GIHIVVPLTP KDDWETVKGF SQKIVQHMAK 750
    LIPDRFSAVS GPKNRVGKIF IDYLRNGKGA TTINAYAART REGLPVSVPL 800
    FKEEVKEIKG ANIWNIHNLH ERLGELGEDP WKDYGKIKQT ITADMRRMIG 850
    LKK 853
    Length:853
    Mass (Da):95,157
    Last modified:July 11, 2012 - v1
    Checksum:i4956B4C98457AFC1
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP003041 Genomic DNA. Translation: AFJ58044.1.
    RefSeqiYP_006322943.1. NC_017911.1.

    Genome annotation databases

    EnsemblBacteriaiAFJ58044; AFJ58044; PflA506_1430.
    GeneIDi12958145.
    KEGGipfc:PflA506_1430.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP003041 Genomic DNA. Translation: AFJ58044.1 .
    RefSeqi YP_006322943.1. NC_017911.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AFJ58044 ; AFJ58044 ; PflA506_1430 .
    GeneIDi 12958145.
    KEGGi pfc:PflA506_1430.

    Phylogenomic databases

    KOi K01971.

    Enzyme and pathway databases

    BioCyci PFLU1037911:GLIS-1429-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: A506Imported.

    Entry informationi

    Entry nameiI2BUW1_PSEFL
    AccessioniPrimary (citable) accession number: I2BUW1
    Entry historyi
    Integrated into UniProtKB/TrEMBL: July 11, 2012
    Last sequence update: July 11, 2012
    Last modified: October 1, 2014
    This is version 15 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3