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I2BUW1

- I2BUW1_PSEFL

UniProt

I2BUW1 - I2BUW1_PSEFL

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Protein
Submitted name: DNA ligase D
Gene
ligD_2, PflA506_1430
Organism
Pseudomonas fluorescens A506
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciPFLU1037911:GLIS-1429-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase DImported
Gene namesi
Name:ligD_2Imported
ORF Names:PflA506_1430Imported
OrganismiPseudomonas fluorescens A506Imported
Taxonomic identifieri1037911 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
ProteomesiUP000002879: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

I2BUW1-1 [UniParc]FASTAAdd to Basket

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MTDALNEYNK KRDFDATPEP SGAKKSTRKK KAEDHALQFC IQKHDASRLH    50
YDFRIEIEGT LKSWAVPKGP SLDPQVKRLA MEVEDHPLDY ATFEGNIPEG 100
HYGAGDVIVW DRGIWKCIGD PVESYKKGKL KFELEGEKLG GLWNLVRTHQ 150
EGKSKPWFLI KHQDSAAKPE AEFDVVKELP DSVLSDRTII PKKRGKQPKA 200
KAVEEVPEPR KRAKTGKLTG AKPAPMPDLI KPQLATLVET APAGDWRYEI 250
KFDGYRMMAR IDNGEVKLFT RNGHDWTSKL PRQAEALASL ALQSAWLDGE 300
VIAADDEGVP SFQILQNAFE SGKSQAIVFY LFDMPYLNGV DLREVPVEER 350
RAALAQVVER SEDDIIRFSE DFGEEASDLL TSVCQMHMEG LIGKRAGSTY 400
VSRRSDNWIK LKCKHRQEFV VVGYSEPKGA RTSFGALLLG LHDKDSGELR 450
YSGKVGTGFN ERTLRTILEQ LKPLETSKPA VVNPPTGADA RGVHWLKPEL 500
LAEVAYAEIT KDGSVRHSVF HGLRNDKPAK EITEETPVPA SDVQGKKTKP 550
AAKKKPVKAD PKPTSGKIRI THLDRVIDAS SGSTKMQLAE YYVSIADWIL 600
PTLHDRPIAL VRAPEGIAGE LFFQKNVERL PIPGIETVEG ESVMLINNAE 650
ALVGAVQKST IEFHSWNAKA PDLDRPDRFV LDLDPDPSLP WKSMVEATTL 700
TLTILDELGL KSFVKTSGGK GIHIVVPLTP KDDWETVKGF SQKIVQHMAK 750
LIPDRFSAVS GPKNRVGKIF IDYLRNGKGA TTINAYAART REGLPVSVPL 800
FKEEVKEIKG ANIWNIHNLH ERLGELGEDP WKDYGKIKQT ITADMRRMIG 850
LKK 853
Length:853
Mass (Da):95,157
Last modified:July 11, 2012 - v1
Checksum:i4956B4C98457AFC1
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP003041 Genomic DNA. Translation: AFJ58044.1.
RefSeqiYP_006322943.1. NC_017911.1.

Genome annotation databases

EnsemblBacteriaiAFJ58044; AFJ58044; PflA506_1430.
GeneIDi12958145.
KEGGipfc:PflA506_1430.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP003041 Genomic DNA. Translation: AFJ58044.1 .
RefSeqi YP_006322943.1. NC_017911.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AFJ58044 ; AFJ58044 ; PflA506_1430 .
GeneIDi 12958145.
KEGGi pfc:PflA506_1430.

Phylogenomic databases

KOi K01971.

Enzyme and pathway databases

BioCyci PFLU1037911:GLIS-1429-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: A506Imported.

Entry informationi

Entry nameiI2BUW1_PSEFL
AccessioniPrimary (citable) accession number: I2BUW1
Entry historyi
Integrated into UniProtKB/TrEMBL: July 11, 2012
Last sequence update: July 11, 2012
Last modified: September 3, 2014
This is version 14 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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