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Protein

ATP-dependent RNA helicase RhlB

Gene

rhlB

Organism
Shimwellia blattae (strain ATCC 29907 / DSM 4481 / JCM 1650 / NBRC 105725 / CDC 9005-74) (Escherichia blattae)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

DEAD-box RNA helicase involved in RNA degradation. Has RNA-dependent ATPase activity and unwinds double-stranded RNA.UniRule annotationSAAS annotation

Catalytic activityi

ATP + H2O = ADP + phosphate.UniRule annotationSAAS annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionHelicaseUniRule annotationSAAS annotationImported, Hydrolase, RNA-bindingUniRule annotationSAAS annotation
LigandATP-binding, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
ATP-dependent RNA helicase RhlBUniRule annotationSAAS annotation (EC:3.6.4.13UniRule annotationSAAS annotation)
Gene namesi
Name:rhlBUniRule annotationImported
Ordered Locus Names:EBL_c38040Imported
OrganismiShimwellia blattae (strain ATCC 29907 / DSM 4481 / JCM 1650 / NBRC 105725 / CDC 9005-74) (Escherichia blattae)Imported
Taxonomic identifieri630626 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeShimwellia
Proteomesi
  • UP000001955 Componenti: Chromosome

Subcellular locationi

  • Cytoplasm UniRule annotationSAAS annotation

GO - Cellular componenti

Keywords - Cellular componenti

CytoplasmUniRule annotationSAAS annotation

Interactioni

Subunit structurei

Component of the RNA degradosome, which is a multiprotein complex involved in RNA processing and mRNA degradation.UniRule annotationSAAS annotation

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini9 – 37Q_MOTIFInterPro annotationAdd BLAST29
Domaini40 – 219Helicase ATP-bindingInterPro annotationAdd BLAST180
Domaini245 – 390Helicase C-terminalInterPro annotationAdd BLAST146

Motif

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Motifi9 – 37Q motifPROSITE-ProRule annotationAdd BLAST29

Sequence similaritiesi

Belongs to the DEAD box helicase family. RhlB subfamily.UniRule annotationSAAS annotation

Phylogenomic databases

KOiK03732.
OMAiDEMPVNA.
OrthoDBiPOG091H01ST.

Family and domain databases

HAMAPiMF_00661. DEAD_helicase_RhlB. 1 hit.
InterProiView protein in InterPro
IPR011545. DEAD/DEAH_box_helicase_dom.
IPR014001. Helicase_ATP-bd.
IPR001650. Helicase_C.
IPR027417. P-loop_NTPase.
IPR000629. RNA-helicase_DEAD-box_CS.
IPR023554. RNA_helicase_ATP-dep_RhlB.
IPR014014. RNA_helicase_DEAD_Q_motif.
PfamiView protein in Pfam
PF00270. DEAD. 1 hit.
PF00271. Helicase_C. 1 hit.
SMARTiView protein in SMART
SM00487. DEXDc. 1 hit.
SM00490. HELICc. 1 hit.
SUPFAMiSSF52540. SSF52540. 1 hit.
PROSITEiView protein in PROSITE
PS00039. DEAD_ATP_HELICASE. 1 hit.
PS51192. HELICASE_ATP_BIND_1. 1 hit.
PS51194. HELICASE_CTER. 1 hit.
PS51195. Q_MOTIF. 1 hit.

Sequencei

Sequence statusi: Complete.

I2BE85-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSKTHLTDKK FSDFALHPQV VEALEKKGFT NCTHIQALAL PLTLAGKDVA
60 70 80 90 100
GQAQTGTGKT MAFLTSTFHY LLSHPAHENR QVNQPRALIM APTRELAVQI
110 120 130 140 150
HSDAEPLAEA TGLKLGLAYG GDGYDKQLKV LESGVDILIG TTGRLIDYTK
160 170 180 190 200
QNYVNMGAIQ VVVLDEADRM YDLGFIKDIR WLFRRMPPAT ERLNMLFSAT
210 220 230 240 250
LSYRVRELAF EQMNNAEYVE VEPEQKTGHR IKEELFYPSN DEKMRLLQTL
260 270 280 290 300
IEEEWPDRAI IFANTKHRCE DIWGHLAADG HRVGLLTGDV AQKKRLRILD
310 320 330 340 350
DFTHGNLDIL VATDVAARGL HIPEVTHVFN YDLPDDCEDY VHRIGRTGRA
360 370 380 390 400
GASGSSISLA CEEYALNLPA IENYIGHSIP VSKYNPDALL TELPPPKRLT
410 420
RARPGNNNQR RGNANRNRRR AG
Length:422
Mass (Da):47,344
Last modified:July 11, 2012 - v1
Checksum:i21902DDB5A9C6135
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001560 Genomic DNA. Translation: AFJ48839.1.
RefSeqiWP_002444147.1. NZ_BAHA01000027.1.

Genome annotation databases

EnsemblBacteriaiAFJ48839; AFJ48839; EBL_c38040.
KEGGiebt:EBL_c38040.
PATRICifig|630626.3.peg.3708.

Similar proteinsi

Entry informationi

Entry nameiI2BE85_SHIBC
AccessioniPrimary (citable) accession number: I2BE85
Secondary accession number(s): K6VKF5
Entry historyiIntegrated into UniProtKB/TrEMBL: July 11, 2012
Last sequence update: July 11, 2012
Last modified: June 7, 2017
This is version 41 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported