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I1YJP8 (I1YJP8_METFJ) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 14. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:Q7C_2001 EMBL AFJ03141.1
OrganismMethylophaga frappieri (strain ATCC BAA-2434 / DSM 25690 / JAM7) [Complete proteome] [HAMAP] EMBL AFJ03141.1
Taxonomic identifier754477 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaThiotrichalesPiscirickettsiaceaeMethylophaga

Protein attributes

Sequence length257 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL AFJ03141.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
I1YJP8 [UniParc].

Last modified July 11, 2012. Version 1.
Checksum: E989F1F4DFC3BDD7

FASTA25728,839
        10         20         30         40         50         60 
MQLASVYQPE TAAPVSAYLI SEKYDGVRAI WTGTQLLTRN GNVINAPDWF TDPLPDVWLD 

        70         80         90        100        110        120 
GELWTTHQDF ARLSGIVRTQ IPDDAEWQQV SYRVFDMPDS TLPFELRYQH YTQLITQLNS 

       130        140        150        160        170        180 
AHIKPVQQVR VQSQAALQSL LKDKLATGAE GLMLHLATAK HRGGRTRAVL KLKPYEDAEA 

       190        200        210        220        230        240 
VVIGHLPGKG KYINQLGALR VKNEQGQIFA IGSGLSDQDR ASPPPIGTII TYRYQGYTKT 

       250 
GLPRFARFIR IREPDPD 

« Hide

References

[1]"Complete genome sequences of Methylophaga sp. strain JAM1 and Methylophaga sp. strain JAM7."
Villeneuve C., Martineau C., Mauffrey F., Villemur R.
J. Bacteriol. 194:4126-4127(2012) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: JAM7 EMBL AFJ03141.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP003380 Genomic DNA. Translation: AFJ03141.1.
RefSeqYP_006293828.1. NC_017856.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAFJ03141; AFJ03141; Q7C_2001.
GeneID12843900.
KEGGmec:Q7C_2001.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01971.

Enzyme and pathway databases

BioCycMSP754477:GLGI-1994-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
ProtoNetSearch...

Entry information

Entry nameI1YJP8_METFJ
AccessionPrimary (citable) accession number: I1YJP8
Entry history
Integrated into UniProtKB/TrEMBL: July 11, 2012
Last sequence update: July 11, 2012
Last modified: June 11, 2014
This is version 14 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)