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Protein
Submitted name:

DNA ligase (ATP)

Gene

Q7A_922

Organism
Methylophaga nitratireducenticrescens (strain ATCC BAA-2433 / DSM 25689 / JAM1)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciMSP754476:GLGH-915-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase (ATP)Imported (EC:6.5.1.1Imported)
Gene namesi
Ordered Locus Names:Q7A_922Imported
OrganismiMethylophaga nitratireducenticrescens (strain ATCC BAA-2433 / DSM 25689 / JAM1)Imported
Taxonomic identifieri754476 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaThiotrichalesPiscirickettsiaceaeMethylophaga
ProteomesiUP000009144: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2020 PotentialImportedAdd
BLAST
Chaini21 – 281261 PotentialImportedPRO_5000888032Add
BLAST

Family & Domainsi

Keywords - Domaini

SignalImported

Phylogenomic databases

KOiK01971.
OMAiVRGYWDG.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

I1XH95-1 [UniParc]FASTAAdd to Basket

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        10         20         30         40         50
MSKLILLFLA VFYFTIQVFA VGAETPPQVQ LANVYNQDNV SDVSNYLVSE
60 70 80 90 100
KYDGVRAIWT GEELLTRQGN PISAPEWFTA PLPAVWLDGE LWTRRQDFDS
110 120 130 140 150
LSGIVRTQTP DDNLWREVNY MVFDMPDAEL PFEQRYNNYS RLIEQINADH
160 170 180 190 200
IQAVKQQRFD SNHALSEHLQ TLVENGAEGL MLHLATAPHR SSRSDALLKL
210 220 230 240 250
KPYFDDEAEV IAHLPGQGKY TGMLGALRVK NQQGIEFSIG TGFTDADRAN
260 270 280
PPPIGSIITY KYHGFTKNDV PRFASFLRIR E
Length:281
Mass (Da):31,896
Last modified:July 11, 2012 - v1
Checksum:iA878C7617D85129D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003390 Genomic DNA. Translation: AFI83764.1.
RefSeqiWP_014706139.1. NC_017857.1.
YP_006295409.1. NC_017857.1.

Genome annotation databases

EnsemblBacteriaiAFI83764; AFI83764; Q7A_922.
GeneIDi12846439.
KEGGimej:Q7A_922.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003390 Genomic DNA. Translation: AFI83764.1.
RefSeqiWP_014706139.1. NC_017857.1.
YP_006295409.1. NC_017857.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAFI83764; AFI83764; Q7A_922.
GeneIDi12846439.
KEGGimej:Q7A_922.

Phylogenomic databases

KOiK01971.
OMAiVRGYWDG.

Enzyme and pathway databases

BioCyciMSP754476:GLGH-915-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Complete genome sequences of Methylophaga sp. strain JAM1 and Methylophaga sp. strain JAM7."
    Villeneuve C., Martineau C., Mauffrey F., Villemur R.
    J. Bacteriol. 194:4126-4127(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: JAM1Imported.

Entry informationi

Entry nameiI1XH95_METNJ
AccessioniPrimary (citable) accession number: I1XH95
Entry historyi
Integrated into UniProtKB/TrEMBL: July 11, 2012
Last sequence update: July 11, 2012
Last modified: January 7, 2015
This is version 18 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.