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I1XH95 (I1XH95_METNJ) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 13. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein attributes

Sequence length281 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existencePredicted

Ontologies

Keywords
   DomainSignal EMBL AFI83764.1
   Molecular functionLigase EMBL AFI83764.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: UniProtKB-EC

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 2020 Potential EMBL AFI83764.1
Chain21 – 281261 Potential EMBL AFI83764.1
PRO_5000888032

Sequences

Sequence LengthMass (Da)Tools
I1XH95 [UniParc].

Last modified July 11, 2012. Version 1.
Checksum: A878C7617D85129D

FASTA28131,896
        10         20         30         40         50         60 
MSKLILLFLA VFYFTIQVFA VGAETPPQVQ LANVYNQDNV SDVSNYLVSE KYDGVRAIWT 

        70         80         90        100        110        120 
GEELLTRQGN PISAPEWFTA PLPAVWLDGE LWTRRQDFDS LSGIVRTQTP DDNLWREVNY 

       130        140        150        160        170        180 
MVFDMPDAEL PFEQRYNNYS RLIEQINADH IQAVKQQRFD SNHALSEHLQ TLVENGAEGL 

       190        200        210        220        230        240 
MLHLATAPHR SSRSDALLKL KPYFDDEAEV IAHLPGQGKY TGMLGALRVK NQQGIEFSIG 

       250        260        270        280 
TGFTDADRAN PPPIGSIITY KYHGFTKNDV PRFASFLRIR E 

« Hide

References

[1]"Complete genome sequences of Methylophaga sp. strain JAM1 and Methylophaga sp. strain JAM7."
Villeneuve C., Martineau C., Mauffrey F., Villemur R.
J. Bacteriol. 194:4126-4127(2012) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: JAM1 EMBL AFI83764.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP003390 Genomic DNA. Translation: AFI83764.1.
RefSeqYP_006295409.1. NC_017857.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAFI83764; AFI83764; Q7A_922.
GeneID12846439.
KEGGmej:Q7A_922.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01971.

Enzyme and pathway databases

BioCycMSP754476:GLGH-915-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012310. DNA_ligase_ATP-dep_cent.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
ProtoNetSearch...

Entry information

Entry nameI1XH95_METNJ
AccessionPrimary (citable) accession number: I1XH95
Entry history
Integrated into UniProtKB/TrEMBL: July 11, 2012
Last sequence update: July 11, 2012
Last modified: April 16, 2014
This is version 13 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)