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I1RD80 (I1RD80_GIBZE) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 13. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length568 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Cofactor

Pyridoxal phosphate By similarity. RuleBase RU000382

Sequence similarities

Belongs to the group II decarboxylase family. RuleBase RU000382

Sequences

Sequence LengthMass (Da)Tools
I1RD80 [UniParc].

Last modified June 13, 2012. Version 1.
Checksum: 2C35DBDA7A3F83EE

FASTA56863,680
        10         20         30         40         50         60 
MSLAQHSESA SPVPIIETDD QGNPIKSSNG YFPSKGKSST LVDNMAHLSV VGGAHRGDDS 

        70         80         90        100        110        120 
DAASVRSTSS RASRRPEMKL ASYQDEYTTS VYGSRFAGMD LPRHHMPENE MPRDIAYRMI 

       130        140        150        160        170        180 
KDDLSLDNNP MLNLASFVTT YMEDEAEKLM AESFSKNFID YEEYPQSADI QNRCVNMIGD 

       190        200        210        220        230        240 
LFHAPPGSSV GTSTVGSSEA IMLGVLAMKR RWKNRRIAEG KSTEHPNIVM SSAVQVCWEK 

       250        260        270        280        290        300 
ATRYFEIDEK LVYCTPDRFV MDPEQAVDLC DENTIGMCAI LGTTYTGEYE DIKAINDLLV 

       310        320        330        340        350        360 
ERNLDVPIHV DAASGGFVAP FVVPDLEWDF RCEKVVSINV SGHKYGLVYP GVGWVIWRSP 

       370        380        390        400        410        420 
EFLPQELVFN INYLGADQSS FTLNFSKGAS QVIGQYYQLI RLGKHGYRAI MSNLTRTADY 

       430        440        450        460        470        480 
LTETLENMGF VIMSERSGAG LPLVAFRFKT VDEGGDPERH YDEFALAHHL RSRGWVVPAY 

       490        500        510        520        530        540 
TMAPNSGVKM LRVVVREDFT KSRCDQLICD VKLCHGLLKE TDQESIKKRE EYIKNHIVTM 

       550        560 
GRGKHSHPVY KDEQHSLQGK HGKTHAIC 

« Hide

References

« Hide 'large scale' references
[1]"The Fusarium graminearum genome reveals a link between localized polymorphism and pathogen specialization."
Cuomo C.A., Gueldener U., Xu J.-R., Trail F., Turgeon B.G., Di Pietro A., Walton J.D., Ma L.-J., Baker S.E., Rep M., Adam G., Antoniw J., Baldwin T., Calvo S.E., Chang Y.-L., DeCaprio D., Gale L.R., Gnerre S. expand/collapse author list , Goswami R.S., Hammond-Kosack K., Harris L.J., Hilburn K., Kennell J.C., Kroken S., Magnuson J.K., Mannhaupt G., Mauceli E.W., Mewes H.-W., Mitterbauer R., Muehlbauer G., Muensterkoetter M., Nelson D., O'Donnell K., Ouellet T., Qi W., Quesneville H., Roncero M.I.G., Seong K.-Y., Tetko I.V., Urban M., Waalwijk C., Ward T.J., Yao J., Birren B.W., Kistler H.C.
Science 317:1400-1402(2007) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084 EnsemblFungi FGSG_01572P0.
[2]"Genome Sequence of Fusarium graminearum (Gibberella zeae)."
The Broad Institute Genome Sequencing Platform
Birren B., Lander E., Galagan J., Nusbaum C., Devon K., Ma L.-J., Jaffe D., Butler J., Alvarez P., Gnerre S., Grabherr M., Kleber M., Mauceli E., Brockman W., MacCallum I.A., Young S., LaButti K., DeCaprio D. expand/collapse author list , Crawford M., Koehrsen M., Engels R., Montgomery P., Pearson M., Howarth C., Larson L., White J., O'Leary S., Kodira C., Zeng Q., Yandava C., Alvarado L., Kistler C., Xu J.-R., Trail F.
Submitted (APR-2007) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: PH-1 EMBL ESU06900.1.
[3]"Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium."
Ma L.J., van der Does H.C., Borkovich K.A., Coleman J.J., Daboussi M.J., Di Pietro A., Dufresne M., Freitag M., Grabherr M., Henrissat B., Houterman P.M., Kang S., Shim W.B., Woloshuk C., Xie X., Xu J.R., Antoniw J., Baker S.E. expand/collapse author list , Bluhm B.H., Breakspear A., Brown D.W., Butchko R.A., Chapman S., Coulson R., Coutinho P.M., Danchin E.G., Diener A., Gale L.R., Gardiner D.M., Goff S., Hammond-Kosack K.E., Hilburn K., Hua-Van A., Jonkers W., Kazan K., Kodira C.D., Koehrsen M., Kumar L., Lee Y.H., Li L., Manners J.M., Miranda-Saavedra D., Mukherjee M., Park G., Park J., Park S.Y., Proctor R.H., Regev A., Ruiz-Roldan M.C., Sain D., Sakthikumar S., Sykes S., Schwartz D.C., Turgeon B.G., Wapinski I., Yoder O., Young S., Zeng Q., Zhou S., Galagan J., Cuomo C.A., Kistler H.C., Rep M.
Nature 464:367-373(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: GENOME REANNOTATION.
Strain: PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084 EnsemblFungi FGSG_01572P0.
[4]EnsemblFungi
Submitted (APR-2013) to UniProtKB
Cited for: IDENTIFICATION.
Strain: PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084 EnsemblFungi FGSG_01572P0.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
DS231663 Genomic DNA. Translation: ESU06900.1.
RefSeqXP_381748.1. XM_381748.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblFungiFGSG_01572T0; FGSG_01572P0; FGSG_01572.
GeneID2783689.
KEGGfgr:FG01572.1.

Phylogenomic databases

KOK01580.
OrthoDBEOG7P2Z22.

Family and domain databases

Gene3D3.40.640.10. 1 hit.
InterProIPR010107. Glutamate_decarboxylase.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
[Graphical view]
PfamPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMSSF53383. SSF53383. 1 hit.
TIGRFAMsTIGR01788. Glu-decarb-GAD. 1 hit.
ProtoNetSearch...

Entry information

Entry nameI1RD80_GIBZE
AccessionPrimary (citable) accession number: I1RD80
Entry history
Integrated into UniProtKB/TrEMBL: June 13, 2012
Last sequence update: June 13, 2012
Last modified: May 14, 2014
This is version 13 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)