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Protein

Histone deacetylase

Gene

GLYMA_17G085700

Organism
Glycine max (Soybean) (Glycine hispida)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

Hydrolysis of an N(6)-acetyl-lysine residue of a histone to yield a deacetylated histone.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Chromatin regulatorUniRule annotation, HydrolaseUniRule annotationSAAS annotation

Keywords - Biological processi

Transcription, Transcription regulationUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Histone deacetylaseUniRule annotation (EC:3.5.1.98UniRule annotation)
Gene namesi
ORF Names:GLYMA_17G085700Imported
OrganismiGlycine max (Soybean) (Glycine hispida)Imported
Taxonomic identifieri3847 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsfabidsFabalesFabaceaePapilionoideaePhaseoleaeGlycineSoja
Proteomesi
  • UP000008827 Componenti: Chromosome 17

Subcellular locationi

  • Nucleus UniRule annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

NucleusUniRule annotation

Interactioni

Protein-protein interaction databases

STRINGi3847.GLYMA17G09320.1.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini45 – 336Hist_deacetylInterPro annotationAdd BLAST292

Sequence similaritiesi

Belongs to the histone deacetylase family. HD Type 1 subfamily.UniRule annotation

Phylogenomic databases

eggNOGiKOG1342. Eukaryota.
COG0123. LUCA.
InParanoidiI1MTD8.
KOiK06067.
OMAiIQPDNEF.
OrthoDBiEOG093609CH.

Family and domain databases

Gene3Di3.40.800.20. 1 hit.
InterProiIPR000286. His_deacetylse.
IPR003084. His_deacetylse_1.
IPR023801. His_deacetylse_dom.
[Graphical view]
PANTHERiPTHR10625. PTHR10625. 1 hit.
PfamiPF00850. Hist_deacetyl. 1 hit.
[Graphical view]
PIRSFiPIRSF037913. His_deacetylse_1. 1 hit.
PRINTSiPR01270. HDASUPER.
PR01271. HISDACETLASE.

Sequencei

Sequence statusi: Complete.

I1MTD8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGMEEESSII EGGASLPSSG SDAKKRRVTY FYEPTIGDYY YGQGHPMKPH
60 70 80 90 100
RIRMAHNLIV HYSLHRRMEI NRPFPASPAD IRRFHSDDYV DFLSSVSPET
110 120 130 140 150
LADSAFSRHL KRFNVGEDCP VFDGLFPFCQ ASAGGSLGAA VKLNRADADI
160 170 180 190 200
AINWAGGLHH AKKSEASGFC YVNDIVLGIL ELLKAHRRVL YVDIDVHHGD
210 220 230 240 250
GVEEAFYTTD RVMTVSFHKF GDFFPGTGHV KDIGVGSGKN YAVNVPLNDG
260 270 280 290 300
MDDESFRSLF RSIIQKVMEV YQPEAVVLQC GADSLSGDRL GCFNLSVRGH
310 320 330 340 350
ADCLRFLRSF NVPLMVLGGG GYTIRNVARC WCYETAVAVG VEPDNKLPYN
360 370 380 390 400
EYYEYFGPDY TLYVDPSNME NLNTSKDLEK LRNTLLEQIS RLPHAPSVPF
410 420 430 440 450
QTTPPTLQLP EEAEENMDRR PKLRKWDGED YDSDPEEGGK DNSKFSNITA
460 470
HMRDIADEME EEKPEEHPSS CS
Length:472
Mass (Da):52,922
Last modified:June 13, 2012 - v1
Checksum:i53B801827EC709C0
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CM000850 Genomic DNA. Translation: KRH03236.1.
RefSeqiXP_003549603.1. XM_003549555.3.

Genome annotation databases

EnsemblPlantsiGLYMA17G09320.1; GLYMA17G09320.1; GLYMA17G09320.
GeneIDi100819221.
GrameneiGLYMA17G09320.1; GLYMA17G09320.1; GLYMA17G09320.
KEGGigmx:100819221.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CM000850 Genomic DNA. Translation: KRH03236.1.
RefSeqiXP_003549603.1. XM_003549555.3.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3847.GLYMA17G09320.1.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiGLYMA17G09320.1; GLYMA17G09320.1; GLYMA17G09320.
GeneIDi100819221.
GrameneiGLYMA17G09320.1; GLYMA17G09320.1; GLYMA17G09320.
KEGGigmx:100819221.

Phylogenomic databases

eggNOGiKOG1342. Eukaryota.
COG0123. LUCA.
InParanoidiI1MTD8.
KOiK06067.
OMAiIQPDNEF.
OrthoDBiEOG093609CH.

Family and domain databases

Gene3Di3.40.800.20. 1 hit.
InterProiIPR000286. His_deacetylse.
IPR003084. His_deacetylse_1.
IPR023801. His_deacetylse_dom.
[Graphical view]
PANTHERiPTHR10625. PTHR10625. 1 hit.
PfamiPF00850. Hist_deacetyl. 1 hit.
[Graphical view]
PIRSFiPIRSF037913. His_deacetylse_1. 1 hit.
PRINTSiPR01270. HDASUPER.
PR01271. HISDACETLASE.
ProtoNetiSearch...

Entry informationi

Entry nameiI1MTD8_SOYBN
AccessioniPrimary (citable) accession number: I1MTD8
Entry historyi
Integrated into UniProtKB/TrEMBL: June 13, 2012
Last sequence update: June 13, 2012
Last modified: November 2, 2016
This is version 30 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.