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Protein

Histone deacetylase

Gene

LOC100819221

Organism
Glycine max (Soybean) (Glycine hispida)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

Hydrolysis of an N6-acetyl-lysine residue of a histone to yield a deacetylated histone.UniRule annotationSAAS annotation

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Binding sitei118SubstrateUniRule annotation1
Active sitei160Proton acceptorUniRule annotation1
Binding sitei168Substrate; via carbonyl oxygenUniRule annotation1
Metal bindingi195Divalent metal cationUniRule annotation1
Metal bindingi197Divalent metal cationUniRule annotation1
Metal bindingi283Divalent metal cationUniRule annotation1
Binding sitei322SubstrateUniRule annotation1

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionChromatin regulatorUniRule annotationSAAS annotation, HydrolaseUniRule annotationSAAS annotation
Biological processTranscription, Transcription regulationUniRule annotationSAAS annotation
LigandMetal-bindingUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Histone deacetylaseUniRule annotationSAAS annotation (EC:3.5.1.98UniRule annotationSAAS annotation)
Gene namesi
Name:LOC100819221Imported
ORF Names:GLYMA_17G085700Imported
OrganismiGlycine max (Soybean) (Glycine hispida)Imported
Taxonomic identifieri3847 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsfabidsFabalesFabaceaePapilionoideaePhaseoleaeGlycineSoja
Proteomesi
  • UP000008827 Componenti: Chromosome 17

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusUniRule annotationSAAS annotation

Interactioni

Protein-protein interaction databases

STRINGi3847.GLYMA17G09320.1.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini45 – 336Hist_deacetylInterPro annotationAdd BLAST292

Sequence similaritiesi

Belongs to the histone deacetylase family. HD Type 1 subfamily.UniRule annotation

Phylogenomic databases

eggNOGiKOG1342. Eukaryota.
COG0123. LUCA.
InParanoidiI1MTD8.
KOiK06067.
OMAiDAHASWR.
OrthoDBiEOG093609CH.

Family and domain databases

Gene3Di3.40.800.20. 1 hit.
InterProiView protein in InterPro
IPR000286. His_deacetylse.
IPR003084. His_deacetylse_1.
IPR023801. His_deacetylse_dom.
IPR037138. His_deacetylse_dom_sf.
IPR023696. Ureohydrolase_dom_sf.
PANTHERiPTHR10625. PTHR10625. 1 hit.
PfamiView protein in Pfam
PF00850. Hist_deacetyl. 1 hit.
PIRSFiPIRSF037913. His_deacetylse_1. 1 hit.
PRINTSiPR01270. HDASUPER.
PR01271. HISDACETLASE.
SUPFAMiSSF52768. SSF52768. 1 hit.

Sequencei

Sequence statusi: Complete.

I1MTD8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGMEEESSII EGGASLPSSG SDAKKRRVTY FYEPTIGDYY YGQGHPMKPH
60 70 80 90 100
RIRMAHNLIV HYSLHRRMEI NRPFPASPAD IRRFHSDDYV DFLSSVSPET
110 120 130 140 150
LADSAFSRHL KRFNVGEDCP VFDGLFPFCQ ASAGGSLGAA VKLNRADADI
160 170 180 190 200
AINWAGGLHH AKKSEASGFC YVNDIVLGIL ELLKAHRRVL YVDIDVHHGD
210 220 230 240 250
GVEEAFYTTD RVMTVSFHKF GDFFPGTGHV KDIGVGSGKN YAVNVPLNDG
260 270 280 290 300
MDDESFRSLF RSIIQKVMEV YQPEAVVLQC GADSLSGDRL GCFNLSVRGH
310 320 330 340 350
ADCLRFLRSF NVPLMVLGGG GYTIRNVARC WCYETAVAVG VEPDNKLPYN
360 370 380 390 400
EYYEYFGPDY TLYVDPSNME NLNTSKDLEK LRNTLLEQIS RLPHAPSVPF
410 420 430 440 450
QTTPPTLQLP EEAEENMDRR PKLRKWDGED YDSDPEEGGK DNSKFSNITA
460 470
HMRDIADEME EEKPEEHPSS CS
Length:472
Mass (Da):52,922
Last modified:June 13, 2012 - v1
Checksum:i53B801827EC709C0
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CM000850 Genomic DNA. Translation: KRH03236.1.
RefSeqiXP_003549603.1. XM_003549555.3.

Genome annotation databases

EnsemblPlantsiGLYMA17G09320.1; GLYMA17G09320.1; GLYMA17G09320.
GeneIDi100819221.
GrameneiGLYMA17G09320.1; GLYMA17G09320.1; GLYMA17G09320.
KEGGigmx:100819221.

Similar proteinsi

Entry informationi

Entry nameiI1MTD8_SOYBN
AccessioniPrimary (citable) accession number: I1MTD8
Entry historyiIntegrated into UniProtKB/TrEMBL: June 13, 2012
Last sequence update: June 13, 2012
Last modified: November 22, 2017
This is version 37 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported