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I1MTD8

- I1MTD8_SOYBN

UniProt

I1MTD8 - I1MTD8_SOYBN

Protein

Histone deacetylase

Gene
N/A
Organism
Glycine max (Soybean) (Glycine hispida)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 16 (01 Oct 2014)
      Sequence version 1 (13 Jun 2012)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    Hydrolysis of an N(6)-acetyl-lysine residue of a histone to yield a deacetylated histone.UniRule annotation

    GO - Molecular functioni

    1. NAD-dependent histone deacetylase activity (H3-K14 specific) Source: UniProtKB-EC
    2. NAD-dependent histone deacetylase activity (H3-K18 specific) Source: UniProtKB-EC
    3. NAD-dependent histone deacetylase activity (H3-K9 specific) Source: UniProtKB-EC
    4. NAD-dependent histone deacetylase activity (H4-K16 specific) Source: UniProtKB-EC

    GO - Biological processi

    1. regulation of transcription, DNA-templated Source: UniProtKB-KW
    2. transcription, DNA-templated Source: UniProtKB-KW

    Keywords - Molecular functioni

    Chromatin regulatorUniRule annotation, HydrolaseUniRule annotationSAAS annotation

    Keywords - Biological processi

    Transcription, Transcription regulationUniRule annotation

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Histone deacetylaseUniRule annotation (EC:3.5.1.98UniRule annotation)
    OrganismiGlycine max (Soybean) (Glycine hispida)Imported
    Taxonomic identifieri3847 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsfabidsFabalesFabaceaePapilionoideaePhaseoleaeGlycineSoja
    ProteomesiUP000008827: Chromosome 17

    Subcellular locationi

    Nucleus UniRule annotation

    GO - Cellular componenti

    1. nucleus Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    NucleusUniRule annotation

    Structurei

    3D structure databases

    ProteinModelPortaliI1MTD8.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the histone deacetylase family. HD Type 1 subfamily.UniRule annotation

    Phylogenomic databases

    KOiK06067.
    OMAiEAHRDWK.

    Family and domain databases

    Gene3Di3.40.800.20. 1 hit.
    InterProiIPR000286. His_deacetylse.
    IPR003084. His_deacetylse_1.
    IPR023801. His_deacetylse_dom.
    [Graphical view]
    PANTHERiPTHR10625. PTHR10625. 1 hit.
    PfamiPF00850. Hist_deacetyl. 1 hit.
    [Graphical view]
    PIRSFiPIRSF037913. His_deacetylse_1. 1 hit.
    PRINTSiPR01270. HDASUPER.
    PR01271. HISDACETLASE.

    Sequencei

    Sequence statusi: Complete.

    I1MTD8-1 [UniParc]FASTAAdd to Basket

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    MGMEEESSII EGGASLPSSG SDAKKRRVTY FYEPTIGDYY YGQGHPMKPH    50
    RIRMAHNLIV HYSLHRRMEI NRPFPASPAD IRRFHSDDYV DFLSSVSPET 100
    LADSAFSRHL KRFNVGEDCP VFDGLFPFCQ ASAGGSLGAA VKLNRADADI 150
    AINWAGGLHH AKKSEASGFC YVNDIVLGIL ELLKAHRRVL YVDIDVHHGD 200
    GVEEAFYTTD RVMTVSFHKF GDFFPGTGHV KDIGVGSGKN YAVNVPLNDG 250
    MDDESFRSLF RSIIQKVMEV YQPEAVVLQC GADSLSGDRL GCFNLSVRGH 300
    ADCLRFLRSF NVPLMVLGGG GYTIRNVARC WCYETAVAVG VEPDNKLPYN 350
    EYYEYFGPDY TLYVDPSNME NLNTSKDLEK LRNTLLEQIS RLPHAPSVPF 400
    QTTPPTLQLP EEAEENMDRR PKLRKWDGED YDSDPEEGGK DNSKFSNITA 450
    HMRDIADEME EEKPEEHPSS CS 472
    Length:472
    Mass (Da):52,922
    Last modified:June 13, 2012 - v1
    Checksum:i53B801827EC709C0
    GO

    Sequence databases

    RefSeqiXP_003549603.1. XM_003549555.2.

    Genome annotation databases

    EnsemblPlantsiGLYMA17G09320.1; GLYMA17G09320.1; GLYMA17G09320.
    GeneIDi100819221.
    KEGGigmx:100819221.

    Cross-referencesi

    Sequence databases

    RefSeqi XP_003549603.1. XM_003549555.2.

    3D structure databases

    ProteinModelPortali I1MTD8.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi GLYMA17G09320.1 ; GLYMA17G09320.1 ; GLYMA17G09320 .
    GeneIDi 100819221.
    KEGGi gmx:100819221.

    Phylogenomic databases

    KOi K06067.
    OMAi EAHRDWK.

    Family and domain databases

    Gene3Di 3.40.800.20. 1 hit.
    InterProi IPR000286. His_deacetylse.
    IPR003084. His_deacetylse_1.
    IPR023801. His_deacetylse_dom.
    [Graphical view ]
    PANTHERi PTHR10625. PTHR10625. 1 hit.
    Pfami PF00850. Hist_deacetyl. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF037913. His_deacetylse_1. 1 hit.
    PRINTSi PR01270. HDASUPER.
    PR01271. HISDACETLASE.
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Williams 82Imported.
    2. EnsemblPlants
      Submitted (MAY-2013) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: Williams 82Imported.

    Entry informationi

    Entry nameiI1MTD8_SOYBN
    AccessioniPrimary (citable) accession number: I1MTD8
    Entry historyi
    Integrated into UniProtKB/TrEMBL: June 13, 2012
    Last sequence update: June 13, 2012
    Last modified: October 1, 2014
    This is version 16 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3