I1JB12 (I1JB12_SOYBN) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names	Recommended name: Histone deacetylase PIRNR PIRNR037913 EC=3.5.1.98 PIRNR PIRNR037913
Organism	Glycine max (Soybean) (Glycine hispida) [Reference proteome] EnsemblPlants GLYMA01G45660.3
Taxonomic identifier	3847 [NCBI]
Taxonomic lineage	cellular organisms › Eukaryota › Viridiplantae › Streptophyta › Streptophytina › Embryophyta › Tracheophyta › Euphyllophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › fabids › Fabales › Fabaceae › Papilionoideae › Phaseoleae › Glycine

Protein attributes

Sequence length	497 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity	Hydrolysis of an N(6)-acetyl-lysine residue of a histone to yield a deacetylated histone. PIRNR PIRNR037913
Subcellular location	Nucleus By similarity PIRNR PIRNR037913.
Sequence similarities	Belongs to the histone deacetylase family. HD Type 1 subfamily. PIRNR PIRNR037913

Ontologies

Keywords
Biological process	Transcription Transcription regulation PIRNR PIRNR037913
Cellular component	Nucleus PIRNR PIRNR037913
Molecular function	Chromatin regulator PIRNR PIRNR037913 Hydrolase SAAS SAAS000286 PIRNR PIRNR037913
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	histone H3 deacetylation Inferred from electronic annotation. Source: GOC histone H4 deacetylation Inferred from electronic annotation. Source: GOC regulation of transcription, DNA-dependent Inferred from electronic annotation. Source: UniProtKB-KW transcription, DNA-dependent Inferred from electronic annotation. Source: UniProtKB-KW
Cellular_component	nucleus Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular_function	NAD-dependent histone deacetylase activity (H3-K14 specific) Inferred from electronic annotation. Source: EC NAD-dependent histone deacetylase activity (H3-K18 specific) Inferred from electronic annotation. Source: EC NAD-dependent histone deacetylase activity (H3-K9 specific) Inferred from electronic annotation. Source: EC NAD-dependent histone deacetylase activity (H4-K16 specific) Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	I1JB12 [UniParc]. Last modified June 13, 2012. Version 1. Checksum: 22AFB1B69A8351A1	FASTA	497	56,286
	10 20 30 40 50 60 MESGGNSLPS GSDGVKRKVS YFYDPEVGNY YYGQGHPMKP HRIRMTHALL AHYGLLQHMQ 70 80 90 100 110 120 VLKPMAAKDR DLCKFHADDY VAFLRGITPE TQQDQLRQLK RFNVGEDCPV FDGLYSFCQT 130 140 150 160 170 180 YAGGSVGGAL KLNHGVCDIA INWAGGLHHA KKCEASGFCY VNDIVLAILE LLKIHERVLY 190 200 210 220 230 240 VDIDIHHGDG VEEAFYTTDR VMTVSFHKFG DYFPGTGDIR DIGYAKGKYY SLNVPLDDGI 250 260 270 280 290 300 DDESYQSLFK PIMGKVMEIF RPGAVVLQCG ADSLSGDRLG CFNLSIKGHA ECVRYMRSFN 310 320 330 340 350 360 VPLLLLGGGG YTIRNVARCW CFETSVALGI ELDDKMPQHE YYEYFGPDYT LHVAPSNMEN 370 380 390 400 410 420 KNSRQLLDEI RAKLLDNLSR LQHAPSVPFQ ERPPDAELLE RDEDQDDRDE RWDPDSDREV 430 440 450 460 470 480 GDDSNPVRRR VKSECVDAED KDTESYHKHL DCGRDYLTPF KEISCSKVSG VYSMAVDEPC 490 IKEEQDNLKE LSDHRPR

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Genome sequence of the palaeopolyploid soybean." Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., Sandhu D. , Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., Jackson S.A. Nature 463:178-183(2010) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Williams 82 EnsemblPlants GLYMA01G45660.4 EnsemblPlants GLYMA01G45660.3.
[2]	EnsemblPlants Submitted (NOV-2012) to UniProtKB Cited for: IDENTIFICATION. Strain: Williams 82 EnsemblPlants GLYMA01G45660.4 EnsemblPlants GLYMA01G45660.3.

Cross-references

Sequence databases
RefSeq	XP_003517607.1. XM_003517559.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblPlants	GLYMA01G45660.3; GLYMA01G45660.3; GLYMA01G45660. GLYMA01G45660.4; GLYMA01G45660.4; GLYMA01G45660.
GeneID	100779296.
KEGG	gmx:100779296.
Phylogenomic databases
KO	K06067.
Family and domain databases
Gene3D	3.40.800.20. 1 hit.
InterPro	IPR000286. His_deacetylse. IPR003084. His_deacetylse_1. IPR023801. His_deacetylse_dom. [Graphical view]
PANTHER	PTHR10625. PTHR10625. 1 hit.
Pfam	PF00850. Hist_deacetyl. 1 hit. [Graphical view]
PIRSF	PIRSF037913. His_deacetylse_1. 1 hit.
PRINTS	PR01270. HDASUPER. PR01271. HISDACETLASE.
ProtoNet	Search...

Entry information

Entry name

I1JB12_SOYBN

Accession

Primary (citable) accession number: I1JB12

Entry history

Integrated into UniProtKB/TrEMBL:	June 13, 2012
Last sequence update:	June 13, 2012
Last modified:	May 1, 2013
This is version 10 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)