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I1JB12

- I1JB12_SOYBN

UniProt

I1JB12 - I1JB12_SOYBN

Protein

Histone deacetylase

Gene
N/A
Organism
Glycine max (Soybean) (Glycine hispida)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 20 (01 Oct 2014)
      Sequence version 1 (13 Jun 2012)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    Hydrolysis of an N(6)-acetyl-lysine residue of a histone to yield a deacetylated histone.UniRule annotation

    GO - Molecular functioni

    1. NAD-dependent histone deacetylase activity (H3-K14 specific) Source: UniProtKB-EC
    2. NAD-dependent histone deacetylase activity (H3-K18 specific) Source: UniProtKB-EC
    3. NAD-dependent histone deacetylase activity (H3-K9 specific) Source: UniProtKB-EC
    4. NAD-dependent histone deacetylase activity (H4-K16 specific) Source: UniProtKB-EC

    GO - Biological processi

    1. regulation of transcription, DNA-templated Source: UniProtKB-KW
    2. transcription, DNA-templated Source: UniProtKB-KW

    Keywords - Molecular functioni

    Chromatin regulatorUniRule annotation, HydrolaseUniRule annotationSAAS annotation

    Keywords - Biological processi

    Transcription, Transcription regulationUniRule annotation

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Histone deacetylaseUniRule annotation (EC:3.5.1.98UniRule annotation)
    OrganismiGlycine max (Soybean) (Glycine hispida)Imported
    Taxonomic identifieri3847 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsfabidsFabalesFabaceaePapilionoideaePhaseoleaeGlycineSoja
    ProteomesiUP000008827: Chromosome 1

    Subcellular locationi

    Nucleus UniRule annotation

    GO - Cellular componenti

    1. nucleus Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    NucleusUniRule annotation

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the histone deacetylase family. HD Type 1 subfamily.UniRule annotation

    Phylogenomic databases

    KOiK06067.
    OMAiAFETGIC.

    Family and domain databases

    Gene3Di3.40.800.20. 1 hit.
    InterProiIPR000286. His_deacetylse.
    IPR003084. His_deacetylse_1.
    IPR023801. His_deacetylse_dom.
    [Graphical view]
    PANTHERiPTHR10625. PTHR10625. 1 hit.
    PfamiPF00850. Hist_deacetyl. 1 hit.
    [Graphical view]
    PIRSFiPIRSF037913. His_deacetylse_1. 1 hit.
    PRINTSiPR01270. HDASUPER.
    PR01271. HISDACETLASE.

    Sequencei

    Sequence statusi: Complete.

    I1JB12-1 [UniParc]FASTAAdd to Basket

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    MESGGNSLPS GSDGVKRKVS YFYDPEVGNY YYGQGHPMKP HRIRMTHALL    50
    AHYGLLQHMQ VLKPMAAKDR DLCKFHADDY VAFLRGITPE TQQDQLRQLK 100
    RFNVGEDCPV FDGLYSFCQT YAGGSVGGAL KLNHGVCDIA INWAGGLHHA 150
    KKCEASGFCY VNDIVLAILE LLKIHERVLY VDIDIHHGDG VEEAFYTTDR 200
    VMTVSFHKFG DYFPGTGDIR DIGYAKGKYY SLNVPLDDGI DDESYQSLFK 250
    PIMGKVMEIF RPGAVVLQCG ADSLSGDRLG CFNLSIKGHA ECVRYMRSFN 300
    VPLLLLGGGG YTIRNVARCW CFETSVALGI ELDDKMPQHE YYEYFGPDYT 350
    LHVAPSNMEN KNSRQLLDEI RAKLLDNLSR LQHAPSVPFQ ERPPDAELLE 400
    RDEDQDDRDE RWDPDSDREV GDDSNPVRRR VKSECVDAED KDTESYHKHL 450
    DCGRDYLTPF KEISCSKVSG VYSMAVDEPC IKEEQDNLKE LSDHRPR 497
    Length:497
    Mass (Da):56,286
    Last modified:June 13, 2012 - v1
    Checksum:i22AFB1B69A8351A1
    GO

    Sequence databases

    RefSeqiXP_003517607.1. XM_003517559.2.

    Genome annotation databases

    EnsemblPlantsiGLYMA01G45660.3; GLYMA01G45660.3; GLYMA01G45660.
    GLYMA01G45660.4; GLYMA01G45660.4; GLYMA01G45660.
    GeneIDi100779296.
    KEGGigmx:100779296.

    Cross-referencesi

    Sequence databases

    RefSeqi XP_003517607.1. XM_003517559.2.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi GLYMA01G45660.3 ; GLYMA01G45660.3 ; GLYMA01G45660 .
    GLYMA01G45660.4 ; GLYMA01G45660.4 ; GLYMA01G45660 .
    GeneIDi 100779296.
    KEGGi gmx:100779296.

    Phylogenomic databases

    KOi K06067.
    OMAi AFETGIC.

    Family and domain databases

    Gene3Di 3.40.800.20. 1 hit.
    InterProi IPR000286. His_deacetylse.
    IPR003084. His_deacetylse_1.
    IPR023801. His_deacetylse_dom.
    [Graphical view ]
    PANTHERi PTHR10625. PTHR10625. 1 hit.
    Pfami PF00850. Hist_deacetyl. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF037913. His_deacetylse_1. 1 hit.
    PRINTSi PR01270. HDASUPER.
    PR01271. HISDACETLASE.
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Williams 82Imported.
    2. EnsemblPlants
      Submitted (NOV-2012) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: Williams 82Imported.
    3. EnsemblPlants
      Submitted (MAY-2013) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: Williams 82Imported.

    Entry informationi

    Entry nameiI1JB12_SOYBN
    AccessioniPrimary (citable) accession number: I1JB12
    Entry historyi
    Integrated into UniProtKB/TrEMBL: June 13, 2012
    Last sequence update: June 13, 2012
    Last modified: October 1, 2014
    This is version 20 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3