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Protein

Histone deacetylase

Gene

LOC100779296

Organism
Glycine max (Soybean) (Glycine hispida)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

Hydrolysis of an N6-acetyl-lysine residue of a histone to yield a deacetylated histone.UniRule annotationSAAS annotation

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Binding sitei107SubstrateUniRule annotation1
Active sitei149Proton acceptorUniRule annotation1
Binding sitei157Substrate; via carbonyl oxygenUniRule annotation1
Metal bindingi184Divalent metal cationUniRule annotation1
Metal bindingi186Divalent metal cationUniRule annotation1
Metal bindingi272Divalent metal cationUniRule annotation1
Binding sitei311SubstrateUniRule annotation1

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionChromatin regulatorUniRule annotationSAAS annotation, HydrolaseUniRule annotationSAAS annotation
Biological processTranscription, Transcription regulationUniRule annotationSAAS annotation
LigandMetal-bindingUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Histone deacetylaseUniRule annotationSAAS annotation (EC:3.5.1.98UniRule annotationSAAS annotation)
Gene namesi
Name:LOC100779296Imported
ORF Names:GLYMA_01G245100Imported
OrganismiGlycine max (Soybean) (Glycine hispida)Imported
Taxonomic identifieri3847 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsfabidsFabalesFabaceaePapilionoideaePhaseoleaeGlycineSoja
Proteomesi
  • UP000008827 Componenti: Chromosome 1

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusUniRule annotationSAAS annotation

Interactioni

Protein-protein interaction databases

STRINGi3847.GLYMA01G45660.3.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini36 – 324Hist_deacetylInterPro annotationAdd BLAST289

Sequence similaritiesi

Belongs to the histone deacetylase family. HD Type 1 subfamily.UniRule annotation

Phylogenomic databases

eggNOGiKOG1342. Eukaryota.
COG0123. LUCA.
KOiK06067.
OMAiKCVEFVR.
OrthoDBiEOG093609CH.

Family and domain databases

Gene3Di3.40.800.20. 1 hit.
InterProiView protein in InterPro
IPR000286. His_deacetylse.
IPR003084. His_deacetylse_1.
IPR023801. His_deacetylse_dom.
PANTHERiPTHR10625. PTHR10625. 1 hit.
PfamiView protein in Pfam
PF00850. Hist_deacetyl. 1 hit.
PIRSFiPIRSF037913. His_deacetylse_1. 1 hit.
PRINTSiPR01270. HDASUPER.
PR01271. HISDACETLASE.

Sequencei

Sequence statusi: Complete.

I1JB12-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MESGGNSLPS GSDGVKRKVS YFYDPEVGNY YYGQGHPMKP HRIRMTHALL
60 70 80 90 100
AHYGLLQHMQ VLKPMAAKDR DLCKFHADDY VAFLRGITPE TQQDQLRQLK
110 120 130 140 150
RFNVGEDCPV FDGLYSFCQT YAGGSVGGAL KLNHGVCDIA INWAGGLHHA
160 170 180 190 200
KKCEASGFCY VNDIVLAILE LLKIHERVLY VDIDIHHGDG VEEAFYTTDR
210 220 230 240 250
VMTVSFHKFG DYFPGTGDIR DIGYAKGKYY SLNVPLDDGI DDESYQSLFK
260 270 280 290 300
PIMGKVMEIF RPGAVVLQCG ADSLSGDRLG CFNLSIKGHA ECVRYMRSFN
310 320 330 340 350
VPLLLLGGGG YTIRNVARCW CFETSVALGI ELDDKMPQHE YYEYFGPDYT
360 370 380 390 400
LHVAPSNMEN KNSRQLLDEI RAKLLDNLSR LQHAPSVPFQ ERPPDAELLE
410 420 430 440 450
RDEDQDDRDE RWDPDSDREV GDDSNPVRRR VKSECVDAED KDTESYHKHL
460 470 480 490
DCGRDYLTPF KEISCSKVSG VYSMAVDEPC IKEEQDNLKE LSDHRPR
Length:497
Mass (Da):56,286
Last modified:June 13, 2012 - v1
Checksum:i22AFB1B69A8351A1
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CM000834 Genomic DNA. Translation: KRH77972.1.
CM000834 Genomic DNA. Translation: KRH77973.1.
RefSeqiXP_003517607.1. XM_003517559.3.

Genome annotation databases

EnsemblPlantsiGLYMA01G45660.3; GLYMA01G45660.3; GLYMA01G45660.
GLYMA01G45660.4; GLYMA01G45660.4; GLYMA01G45660.
GeneIDi100779296.
GrameneiGLYMA01G45660.3; GLYMA01G45660.3; GLYMA01G45660.
GLYMA01G45660.4; GLYMA01G45660.4; GLYMA01G45660.
KEGGigmx:100779296.

Similar proteinsi

Entry informationi

Entry nameiI1JB12_SOYBN
AccessioniPrimary (citable) accession number: I1JB12
Entry historyiIntegrated into UniProtKB/TrEMBL: June 13, 2012
Last sequence update: June 13, 2012
Last modified: August 30, 2017
This is version 40 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported