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Protein

Histone deacetylase

Gene
N/A
Organism
Glycine max (Soybean) (Glycine hispida)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

Hydrolysis of an N(6)-acetyl-lysine residue of a histone to yield a deacetylated histone.UniRule annotation

GO - Molecular functioni

  1. NAD-dependent histone deacetylase activity (H3-K14 specific) Source: UniProtKB-EC
  2. NAD-dependent histone deacetylase activity (H3-K18 specific) Source: UniProtKB-EC
  3. NAD-dependent histone deacetylase activity (H3-K9 specific) Source: UniProtKB-EC
  4. NAD-dependent histone deacetylase activity (H4-K16 specific) Source: UniProtKB-EC

GO - Biological processi

  1. regulation of transcription, DNA-templated Source: UniProtKB-KW
  2. transcription, DNA-templated Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

Chromatin regulatorUniRule annotation, HydrolaseUniRule annotationSAAS annotation

Keywords - Biological processi

Transcription, Transcription regulationUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Histone deacetylaseUniRule annotation (EC:3.5.1.98UniRule annotation)
OrganismiGlycine max (Soybean) (Glycine hispida)Imported
Taxonomic identifieri3847 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsfabidsFabalesFabaceaePapilionoideaePhaseoleaeGlycineSoja
ProteomesiUP000008827 Componenti: Chromosome 1

Subcellular locationi

Nucleus UniRule annotation

GO - Cellular componenti

  1. nucleus Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

NucleusUniRule annotation

Structurei

3D structure databases

ProteinModelPortaliI1JB12.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the histone deacetylase family. HD Type 1 subfamily.UniRule annotation

Phylogenomic databases

InParanoidiI1JB12.
KOiK06067.
OMAiESVFKPV.

Family and domain databases

Gene3Di3.40.800.20. 1 hit.
InterProiIPR000286. His_deacetylse.
IPR003084. His_deacetylse_1.
IPR023801. His_deacetylse_dom.
[Graphical view]
PANTHERiPTHR10625. PTHR10625. 1 hit.
PfamiPF00850. Hist_deacetyl. 1 hit.
[Graphical view]
PIRSFiPIRSF037913. His_deacetylse_1. 1 hit.
PRINTSiPR01270. HDASUPER.
PR01271. HISDACETLASE.

Sequencei

Sequence statusi: Complete.

I1JB12-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MESGGNSLPS GSDGVKRKVS YFYDPEVGNY YYGQGHPMKP HRIRMTHALL
60 70 80 90 100
AHYGLLQHMQ VLKPMAAKDR DLCKFHADDY VAFLRGITPE TQQDQLRQLK
110 120 130 140 150
RFNVGEDCPV FDGLYSFCQT YAGGSVGGAL KLNHGVCDIA INWAGGLHHA
160 170 180 190 200
KKCEASGFCY VNDIVLAILE LLKIHERVLY VDIDIHHGDG VEEAFYTTDR
210 220 230 240 250
VMTVSFHKFG DYFPGTGDIR DIGYAKGKYY SLNVPLDDGI DDESYQSLFK
260 270 280 290 300
PIMGKVMEIF RPGAVVLQCG ADSLSGDRLG CFNLSIKGHA ECVRYMRSFN
310 320 330 340 350
VPLLLLGGGG YTIRNVARCW CFETSVALGI ELDDKMPQHE YYEYFGPDYT
360 370 380 390 400
LHVAPSNMEN KNSRQLLDEI RAKLLDNLSR LQHAPSVPFQ ERPPDAELLE
410 420 430 440 450
RDEDQDDRDE RWDPDSDREV GDDSNPVRRR VKSECVDAED KDTESYHKHL
460 470 480 490
DCGRDYLTPF KEISCSKVSG VYSMAVDEPC IKEEQDNLKE LSDHRPR
Length:497
Mass (Da):56,286
Last modified:June 12, 2012 - v1
Checksum:i22AFB1B69A8351A1
GO

Sequence databases

RefSeqiXP_003517607.1. XM_003517559.2.

Genome annotation databases

EnsemblPlantsiGLYMA01G45660.3; GLYMA01G45660.3; GLYMA01G45660.
GLYMA01G45660.4; GLYMA01G45660.4; GLYMA01G45660.
GeneIDi100779296.
KEGGigmx:100779296.

Cross-referencesi

Sequence databases

RefSeqiXP_003517607.1. XM_003517559.2.

3D structure databases

ProteinModelPortaliI1JB12.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiGLYMA01G45660.3; GLYMA01G45660.3; GLYMA01G45660.
GLYMA01G45660.4; GLYMA01G45660.4; GLYMA01G45660.
GeneIDi100779296.
KEGGigmx:100779296.

Phylogenomic databases

InParanoidiI1JB12.
KOiK06067.
OMAiESVFKPV.

Family and domain databases

Gene3Di3.40.800.20. 1 hit.
InterProiIPR000286. His_deacetylse.
IPR003084. His_deacetylse_1.
IPR023801. His_deacetylse_dom.
[Graphical view]
PANTHERiPTHR10625. PTHR10625. 1 hit.
PfamiPF00850. Hist_deacetyl. 1 hit.
[Graphical view]
PIRSFiPIRSF037913. His_deacetylse_1. 1 hit.
PRINTSiPR01270. HDASUPER.
PR01271. HISDACETLASE.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Williams 82Imported.
  2. EnsemblPlants
    Submitted (OCT-2012) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: Williams 82Imported.
  3. EnsemblPlants
    Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases
    Cited for: IDENTIFICATION.
    Strain: Williams 82Imported.

Entry informationi

Entry nameiI1JB12_SOYBN
AccessioniPrimary (citable) accession number: I1JB12
Entry historyi
Integrated into UniProtKB/TrEMBL: June 12, 2012
Last sequence update: June 12, 2012
Last modified: March 31, 2015
This is version 24 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.