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Protein
Submitted name:

ATP-dependent DNA ligase

Gene

ligC

Organism
Stenotrophomonas maltophilia D457
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciSMAL1163399:GLKX-3111-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligaseImported (EC:6.5.1.1Imported)
Gene namesi
Name:ligCImported
ORF Names:SMD_3111Imported
OrganismiStenotrophomonas maltophilia D457Imported
Taxonomic identifieri1163399 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaXanthomonadalesXanthomonadaceaeStenotrophomonasStenotrophomonas maltophilia group
ProteomesiUP000007390 Componenti: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK10747.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

I0KRE2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKAFAALYQR LDRSTATLDK RAALIDYFRQ AGAHDAAWAL YLLSGGKVGG
60 70 80 90 100
ARRKIAASGE LRAWIAEESG LPPWLVEDSY AQVGDLAETL TLLLDDPSQP
110 120 130 140 150
AADRALADWI EQHLLAVANQ PEAVRRAAVV AGWQQLCSSE RLVFNKLLTG
160 170 180 190 200
ALRVGVSQRL VQQALAEWSG LDIARIAQRM LGEWVPSPAL LGQLLSPDEL
210 220 230 240 250
PLDRQQPYPF FLASPLEGDP AERLGSIEDW LLEWKWDGIR LQLLRRRGEV
260 270 280 290 300
ALWSRGEERL DGRFPEIEQA AMALPDGCVL DGELLAWDEA TDLPRAFTAL
310 320 330 340 350
QTRIQRRKPG AATLRNTPVR VLAYDLLEHD GADLRELPLR ERRARLADVV
360 370 380 390 400
GALGDARIQL SPDVAAEDWP QAAAMRDVAR ERGVEGLMLK RRASPYQAGR
410 420 430 440 450
RRGDWWKWKV DPLTIDAVLL YAQAGHGRRS TLYTDYTFGV WDGDTLVPVA
460 470 480 490 500
KAYSGLDDKE ILALDRWIRA NTRERFGPVR SVRPEHVFEL GFEAVNRSSR
510 520 530
HKSGIAVRFP RILRWRHDKP ASEADQLATL QALAR
Length:535
Mass (Da):59,929
Last modified:June 12, 2012 - v1
Checksum:i50A39428D595F68C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
HE798556 Genomic DNA. Translation: CCH13632.1.
RefSeqiYP_006185801.1. NC_017671.1.

Genome annotation databases

EnsemblBacteriaiCCH13632; CCH13632; SMD_3111.
KEGGismz:SMD_3111.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
HE798556 Genomic DNA. Translation: CCH13632.1.
RefSeqiYP_006185801.1. NC_017671.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCCH13632; CCH13632; SMD_3111.
KEGGismz:SMD_3111.

Phylogenomic databases

KOiK10747.

Enzyme and pathway databases

BioCyciSMAL1163399:GLKX-3111-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Whole-genome sequence of Stenotrophomonas maltophilia D457, a clinical isolate and a model strain."
    Lira F., Hernandez A., Belda E., Sanchez M.B., Moya A., Silva F.J., Martinez J.L.
    J. Bacteriol. 194:3563-3564(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: D457Imported.

Entry informationi

Entry nameiI0KRE2_STEMA
AccessioniPrimary (citable) accession number: I0KRE2
Entry historyi
Integrated into UniProtKB/TrEMBL: June 12, 2012
Last sequence update: June 12, 2012
Last modified: March 31, 2015
This is version 18 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.