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I0KRE2 (I0KRE2_STEMA) Unreviewed, UniProtKB/TrEMBL

Last modified February 19, 2014. Version 11. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length535 AA.
Sequence statusComplete.
Protein existencePredicted

Sequences

Sequence LengthMass (Da)Tools
I0KRE2 [UniParc].

Last modified June 13, 2012. Version 1.
Checksum: 50A39428D595F68C

FASTA53559,929
        10         20         30         40         50         60 
MKAFAALYQR LDRSTATLDK RAALIDYFRQ AGAHDAAWAL YLLSGGKVGG ARRKIAASGE 

        70         80         90        100        110        120 
LRAWIAEESG LPPWLVEDSY AQVGDLAETL TLLLDDPSQP AADRALADWI EQHLLAVANQ 

       130        140        150        160        170        180 
PEAVRRAAVV AGWQQLCSSE RLVFNKLLTG ALRVGVSQRL VQQALAEWSG LDIARIAQRM 

       190        200        210        220        230        240 
LGEWVPSPAL LGQLLSPDEL PLDRQQPYPF FLASPLEGDP AERLGSIEDW LLEWKWDGIR 

       250        260        270        280        290        300 
LQLLRRRGEV ALWSRGEERL DGRFPEIEQA AMALPDGCVL DGELLAWDEA TDLPRAFTAL 

       310        320        330        340        350        360 
QTRIQRRKPG AATLRNTPVR VLAYDLLEHD GADLRELPLR ERRARLADVV GALGDARIQL 

       370        380        390        400        410        420 
SPDVAAEDWP QAAAMRDVAR ERGVEGLMLK RRASPYQAGR RRGDWWKWKV DPLTIDAVLL 

       430        440        450        460        470        480 
YAQAGHGRRS TLYTDYTFGV WDGDTLVPVA KAYSGLDDKE ILALDRWIRA NTRERFGPVR 

       490        500        510        520        530 
SVRPEHVFEL GFEAVNRSSR HKSGIAVRFP RILRWRHDKP ASEADQLATL QALAR 

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References

[1]"Whole-genome sequence of Stenotrophomonas maltophilia D457, a clinical isolate and a model strain."
Lira F., Hernandez A., Belda E., Sanchez M.B., Moya A., Silva F.J., Martinez J.L.
J. Bacteriol. 194:3563-3564(2012) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: D457 EMBL CCH13632.1.
[2]Silva F.
Submitted (MAR-2012) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: D457 EMBL CCH13632.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
HE798556 Genomic DNA. Translation: CCH13632.1.
RefSeqYP_006185801.1. NC_017671.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCCH13632; CCH13632; SMD_3111.
GeneID12744603.
KEGGsmz:SMD_3111.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01971.

Enzyme and pathway databases

BioCycSMAL1163399:GLKX-3111-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR04120. DNA_lig_bact. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameI0KRE2_STEMA
AccessionPrimary (citable) accession number: I0KRE2
Entry history
Integrated into UniProtKB/TrEMBL: June 13, 2012
Last sequence update: June 13, 2012
Last modified: February 19, 2014
This is version 11 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)