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I0KRE2

- I0KRE2_STEMA

UniProt

I0KRE2 - I0KRE2_STEMA

Protein
Submitted name:

ATP-dependent DNA ligase

Gene

ligC

Organism
Stenotrophomonas maltophilia D457
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 14 (01 Oct 2014)
      Sequence version 1 (13 Jun 2012)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA binding Source: InterPro
    3. DNA ligase (ATP) activity Source: UniProtKB-EC

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciSMAL1163399:GLKX-3111-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP-dependent DNA ligaseImported (EC:6.5.1.1Imported)
    Gene namesi
    Name:ligCImported
    ORF Names:SMD_3111Imported
    OrganismiStenotrophomonas maltophilia D457Imported
    Taxonomic identifieri1163399 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaXanthomonadalesXanthomonadaceaeStenotrophomonasStenotrophomonas maltophilia group
    ProteomesiUP000007390: Chromosome

    Family & Domainsi

    Phylogenomic databases

    KOiK01971.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    I0KRE2-1 [UniParc]FASTAAdd to Basket

    « Hide

    MKAFAALYQR LDRSTATLDK RAALIDYFRQ AGAHDAAWAL YLLSGGKVGG    50
    ARRKIAASGE LRAWIAEESG LPPWLVEDSY AQVGDLAETL TLLLDDPSQP 100
    AADRALADWI EQHLLAVANQ PEAVRRAAVV AGWQQLCSSE RLVFNKLLTG 150
    ALRVGVSQRL VQQALAEWSG LDIARIAQRM LGEWVPSPAL LGQLLSPDEL 200
    PLDRQQPYPF FLASPLEGDP AERLGSIEDW LLEWKWDGIR LQLLRRRGEV 250
    ALWSRGEERL DGRFPEIEQA AMALPDGCVL DGELLAWDEA TDLPRAFTAL 300
    QTRIQRRKPG AATLRNTPVR VLAYDLLEHD GADLRELPLR ERRARLADVV 350
    GALGDARIQL SPDVAAEDWP QAAAMRDVAR ERGVEGLMLK RRASPYQAGR 400
    RRGDWWKWKV DPLTIDAVLL YAQAGHGRRS TLYTDYTFGV WDGDTLVPVA 450
    KAYSGLDDKE ILALDRWIRA NTRERFGPVR SVRPEHVFEL GFEAVNRSSR 500
    HKSGIAVRFP RILRWRHDKP ASEADQLATL QALAR 535
    Length:535
    Mass (Da):59,929
    Last modified:June 13, 2012 - v1
    Checksum:i50A39428D595F68C
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    HE798556 Genomic DNA. Translation: CCH13632.1.
    RefSeqiWP_014647985.1. NC_017671.1.
    YP_006185801.1. NC_017671.1.

    Genome annotation databases

    EnsemblBacteriaiCCH13632; CCH13632; SMD_3111.
    GeneIDi12744603.
    KEGGismz:SMD_3111.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    HE798556 Genomic DNA. Translation: CCH13632.1 .
    RefSeqi WP_014647985.1. NC_017671.1.
    YP_006185801.1. NC_017671.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai CCH13632 ; CCH13632 ; SMD_3111 .
    GeneIDi 12744603.
    KEGGi smz:SMD_3111.

    Phylogenomic databases

    KOi K01971.

    Enzyme and pathway databases

    BioCyci SMAL1163399:GLKX-3111-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Whole-genome sequence of Stenotrophomonas maltophilia D457, a clinical isolate and a model strain."
      Lira F., Hernandez A., Belda E., Sanchez M.B., Moya A., Silva F.J., Martinez J.L.
      J. Bacteriol. 194:3563-3564(2012) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: D457Imported.

    Entry informationi

    Entry nameiI0KRE2_STEMA
    AccessioniPrimary (citable) accession number: I0KRE2
    Entry historyi
    Integrated into UniProtKB/TrEMBL: June 13, 2012
    Last sequence update: June 13, 2012
    Last modified: October 1, 2014
    This is version 14 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3