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I0KRE2

- I0KRE2_STEMA

UniProt

I0KRE2 - I0KRE2_STEMA

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Protein
Submitted name:

ATP-dependent DNA ligase

Gene
ligC, SMD_3111
Organism
Stenotrophomonas maltophilia D457
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciSMAL1163399:GLKX-3111-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligaseImported (EC:6.5.1.1Imported)
Gene namesi
Name:ligCImported
ORF Names:SMD_3111Imported
OrganismiStenotrophomonas maltophilia D457Imported
Taxonomic identifieri1163399 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaXanthomonadalesXanthomonadaceaeStenotrophomonasStenotrophomonas maltophilia group
ProteomesiUP000007390: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

I0KRE2-1 [UniParc]FASTAAdd to Basket

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MKAFAALYQR LDRSTATLDK RAALIDYFRQ AGAHDAAWAL YLLSGGKVGG    50
ARRKIAASGE LRAWIAEESG LPPWLVEDSY AQVGDLAETL TLLLDDPSQP 100
AADRALADWI EQHLLAVANQ PEAVRRAAVV AGWQQLCSSE RLVFNKLLTG 150
ALRVGVSQRL VQQALAEWSG LDIARIAQRM LGEWVPSPAL LGQLLSPDEL 200
PLDRQQPYPF FLASPLEGDP AERLGSIEDW LLEWKWDGIR LQLLRRRGEV 250
ALWSRGEERL DGRFPEIEQA AMALPDGCVL DGELLAWDEA TDLPRAFTAL 300
QTRIQRRKPG AATLRNTPVR VLAYDLLEHD GADLRELPLR ERRARLADVV 350
GALGDARIQL SPDVAAEDWP QAAAMRDVAR ERGVEGLMLK RRASPYQAGR 400
RRGDWWKWKV DPLTIDAVLL YAQAGHGRRS TLYTDYTFGV WDGDTLVPVA 450
KAYSGLDDKE ILALDRWIRA NTRERFGPVR SVRPEHVFEL GFEAVNRSSR 500
HKSGIAVRFP RILRWRHDKP ASEADQLATL QALAR 535
Length:535
Mass (Da):59,929
Last modified:June 13, 2012 - v1
Checksum:i50A39428D595F68C
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
HE798556 Genomic DNA. Translation: CCH13632.1.
RefSeqiWP_014647985.1. NC_017671.1.
YP_006185801.1. NC_017671.1.

Genome annotation databases

EnsemblBacteriaiCCH13632; CCH13632; SMD_3111.
GeneIDi12744603.
KEGGismz:SMD_3111.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
HE798556 Genomic DNA. Translation: CCH13632.1 .
RefSeqi WP_014647985.1. NC_017671.1.
YP_006185801.1. NC_017671.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai CCH13632 ; CCH13632 ; SMD_3111 .
GeneIDi 12744603.
KEGGi smz:SMD_3111.

Phylogenomic databases

KOi K01971.

Enzyme and pathway databases

BioCyci SMAL1163399:GLKX-3111-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view ]
SUPFAMi SSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Whole-genome sequence of Stenotrophomonas maltophilia D457, a clinical isolate and a model strain."
    Lira F., Hernandez A., Belda E., Sanchez M.B., Moya A., Silva F.J., Martinez J.L.
    J. Bacteriol. 194:3563-3564(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: D457Imported.

Entry informationi

Entry nameiI0KRE2_STEMA
AccessioniPrimary (citable) accession number: I0KRE2
Entry historyi
Integrated into UniProtKB/TrEMBL: June 13, 2012
Last sequence update: June 13, 2012
Last modified: September 3, 2014
This is version 13 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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