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I0JSZ9

- I0JSZ9_HALH3

UniProt

I0JSZ9 - I0JSZ9_HALH3

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Protein
Submitted name: ATP-dependent DNA ligase
Gene
ligD, HBHAL_4934
Organism
Halobacillus halophilus (strain ATCC 35676 / DSM 2266 / JCM 20832 / NBRC 102448/ NCIMB 2269) (Sporosarcina halophila)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: UniProtKB-EC
Complete GO annotation...

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciHHAL866895:GLDT-3970-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligaseImported (EC:6.5.1.1Imported)
Gene namesi
Name:ligDImported
Ordered Locus Names:HBHAL_4934Imported
OrganismiHalobacillus halophilus (strain ATCC 35676 / DSM 2266 / JCM 20832 / NBRC 102448/ NCIMB 2269) (Sporosarcina halophila)Imported
Taxonomic identifieri866895 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeHalobacillus
ProteomesiUP000007397: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014145. LigD_pol.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

I0JSZ9-1 [UniParc]FASTAAdd to Basket

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MVKPMLLTLT DDLPGSDEWM YEVKYDGFRV LLHVNEGNIT LTSRNGKDFT    50
SQFPEISELK IESDFSPFTL DGELVILNTP YQACFSALQQ RGRLRNADKI 100
QRSARQRPAV FMAFDYLNEE KASYIERKKI LEELLKTFRH PSIQAVESFP 150
DLKEVEGLVH LHRGEGIIAK RKTSRYEAGV RSKHWLKAKQ WRAASGFLTS 200
YDQSNGYYQL QVEEKNNSLY PLGRFKHGMT AEEDHTLRNF FKEKGTRKKQ 250
VWELEPSVCV DIHCLNAEKG EMREPTFHQF RFDLSPSDCT LQKLKWDLSL 300
FPEQVEATNL SKELWNGLSK MDYLVYMRMV SPYLLRFLQD KKITLIRYPD 350
GINQPSFYQK HYPDHAPDYV DVFEEAGERY ILCQNLSSLM WIANQGALEL 400
HLPFQKAGAS FPDEIVIDLD PPDQNHFHLA VSAASLLKPL MEKLNIKSFI 450
KTSGNKGMQI HIPIPERTLS YEETRKLTET FARVLVEQEP DLFTIERLKK 500
KRGDRLYIDY VQHAEGKTII APYSARATKE ATVATPVYWE EVTKNLDPRS 550
FTIKSIVERI ERVGCPFSNY EKARYEQPID QLRNVISDK 589
Length:589
Mass (Da):68,449
Last modified:June 13, 2012 - v1
Checksum:i142EFB5BA24A2218
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
HE717023 Genomic DNA. Translation: CCG47271.1.
RefSeqiWP_014645155.1. NC_017668.1.
YP_006182542.1. NC_017668.1.

Genome annotation databases

EnsemblBacteriaiCCG47271; CCG47271; HBHAL_4934.
GeneIDi12747911.
KEGGihhd:HBHAL_4934.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
HE717023 Genomic DNA. Translation: CCG47271.1 .
RefSeqi WP_014645155.1. NC_017668.1.
YP_006182542.1. NC_017668.1.

3D structure databases

ModBasei Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai CCG47271 ; CCG47271 ; HBHAL_4934 .
GeneIDi 12747911.
KEGGi hhd:HBHAL_4934.

Phylogenomic databases

KOi K01971.

Enzyme and pathway databases

BioCyci HHAL866895:GLDT-3970-MONOMER.

Family and domain databases

InterProi IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014145. LigD_pol.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view ]
TIGRFAMsi TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Chloride and organic osmolytes: a hybrid strategy to cope with elevated salinities by the moderately halophilic, chloride-dependent bacterium Halobacillus halophilus."
    Saum S.H., Pfeiffer F., Palm P., Rampp M., Schuster S.C., Muller V., Oesterhelt D.
    Environ. Microbiol. 15:1619-1633(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 35676 / DSM 2266 / JCM 20832 / NBRC 102448/ NCIMB 2269.

Entry informationi

Entry nameiI0JSZ9_HALH3
AccessioniPrimary (citable) accession number: I0JSZ9
Entry historyi
Integrated into UniProtKB/TrEMBL: June 13, 2012
Last sequence update: June 13, 2012
Last modified: September 3, 2014
This is version 13 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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