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Protein
Submitted name:

LigD protein

Gene

ligD

Organism
Halobacillus halophilus (strain ATCC 35676 / DSM 2266 / JCM 20832 / NBRC 102448/ NCIMB 2269) (Sporosarcina halophila)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciHHAL866895:GLDT-3970-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
LigD proteinImported (EC:6.5.1.1Imported)
Gene namesi
Name:ligDImported
Ordered Locus Names:HBHAL_4934Imported
OrganismiHalobacillus halophilus (strain ATCC 35676 / DSM 2266 / JCM 20832 / NBRC 102448/ NCIMB 2269) (Sporosarcina halophila)Imported
Taxonomic identifieri866895 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeHalobacillus
ProteomesiUP000007397 Componenti: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. LigD_ligase_dom.
IPR014145. LigD_pol_dom.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

I0JSZ9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVKPMLLTLT DDLPGSDEWM YEVKYDGFRV LLHVNEGNIT LTSRNGKDFT
60 70 80 90 100
SQFPEISELK IESDFSPFTL DGELVILNTP YQACFSALQQ RGRLRNADKI
110 120 130 140 150
QRSARQRPAV FMAFDYLNEE KASYIERKKI LEELLKTFRH PSIQAVESFP
160 170 180 190 200
DLKEVEGLVH LHRGEGIIAK RKTSRYEAGV RSKHWLKAKQ WRAASGFLTS
210 220 230 240 250
YDQSNGYYQL QVEEKNNSLY PLGRFKHGMT AEEDHTLRNF FKEKGTRKKQ
260 270 280 290 300
VWELEPSVCV DIHCLNAEKG EMREPTFHQF RFDLSPSDCT LQKLKWDLSL
310 320 330 340 350
FPEQVEATNL SKELWNGLSK MDYLVYMRMV SPYLLRFLQD KKITLIRYPD
360 370 380 390 400
GINQPSFYQK HYPDHAPDYV DVFEEAGERY ILCQNLSSLM WIANQGALEL
410 420 430 440 450
HLPFQKAGAS FPDEIVIDLD PPDQNHFHLA VSAASLLKPL MEKLNIKSFI
460 470 480 490 500
KTSGNKGMQI HIPIPERTLS YEETRKLTET FARVLVEQEP DLFTIERLKK
510 520 530 540 550
KRGDRLYIDY VQHAEGKTII APYSARATKE ATVATPVYWE EVTKNLDPRS
560 570 580
FTIKSIVERI ERVGCPFSNY EKARYEQPID QLRNVISDK
Length:589
Mass (Da):68,449
Last modified:June 13, 2012 - v1
Checksum:i142EFB5BA24A2218
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
HE717023 Genomic DNA. Translation: CCG47271.1.
RefSeqiYP_006182542.1. NC_017668.1.

Genome annotation databases

EnsemblBacteriaiCCG47271; CCG47271; HBHAL_4934.
KEGGihhd:HBHAL_4934.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
HE717023 Genomic DNA. Translation: CCG47271.1.
RefSeqiYP_006182542.1. NC_017668.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCCG47271; CCG47271; HBHAL_4934.
KEGGihhd:HBHAL_4934.

Phylogenomic databases

KOiK01971.

Enzyme and pathway databases

BioCyciHHAL866895:GLDT-3970-MONOMER.

Family and domain databases

InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. LigD_ligase_dom.
IPR014145. LigD_pol_dom.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Chloride and organic osmolytes: a hybrid strategy to cope with elevated salinities by the moderately halophilic, chloride-dependent bacterium Halobacillus halophilus."
    Saum S.H., Pfeiffer F., Palm P., Rampp M., Schuster S.C., Muller V., Oesterhelt D.
    Environ. Microbiol. 15:1619-1633(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 35676 / DSM 2266 / JCM 20832 / NBRC 102448/ NCIMB 2269Imported.

Entry informationi

Entry nameiI0JSZ9_HALH3
AccessioniPrimary (citable) accession number: I0JSZ9
Entry historyi
Integrated into UniProtKB/TrEMBL: June 13, 2012
Last sequence update: June 13, 2012
Last modified: April 29, 2015
This is version 18 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.