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I0JSZ9

- I0JSZ9_HALH3

UniProt

I0JSZ9 - I0JSZ9_HALH3

Protein
Submitted name:

ATP-dependent DNA ligase

Gene

ligD

Organism
Halobacillus halophilus (strain ATCC 35676 / DSM 2266 / JCM 20832 / NBRC 102448/ NCIMB 2269) (Sporosarcina halophila)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 14 (01 Oct 2014)
      Sequence version 1 (13 Jun 2012)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: UniProtKB-EC

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciHHAL866895:GLDT-3970-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP-dependent DNA ligaseImported (EC:6.5.1.1Imported)
    Gene namesi
    Name:ligDImported
    Ordered Locus Names:HBHAL_4934Imported
    OrganismiHalobacillus halophilus (strain ATCC 35676 / DSM 2266 / JCM 20832 / NBRC 102448/ NCIMB 2269) (Sporosarcina halophila)Imported
    Taxonomic identifieri866895 [NCBI]
    Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeHalobacillus
    ProteomesiUP000007397: Chromosome

    Family & Domainsi

    Phylogenomic databases

    KOiK01971.

    Family and domain databases

    InterProiIPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014145. LigD_pol.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view]
    TIGRFAMsiTIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    I0JSZ9-1 [UniParc]FASTAAdd to Basket

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    MVKPMLLTLT DDLPGSDEWM YEVKYDGFRV LLHVNEGNIT LTSRNGKDFT    50
    SQFPEISELK IESDFSPFTL DGELVILNTP YQACFSALQQ RGRLRNADKI 100
    QRSARQRPAV FMAFDYLNEE KASYIERKKI LEELLKTFRH PSIQAVESFP 150
    DLKEVEGLVH LHRGEGIIAK RKTSRYEAGV RSKHWLKAKQ WRAASGFLTS 200
    YDQSNGYYQL QVEEKNNSLY PLGRFKHGMT AEEDHTLRNF FKEKGTRKKQ 250
    VWELEPSVCV DIHCLNAEKG EMREPTFHQF RFDLSPSDCT LQKLKWDLSL 300
    FPEQVEATNL SKELWNGLSK MDYLVYMRMV SPYLLRFLQD KKITLIRYPD 350
    GINQPSFYQK HYPDHAPDYV DVFEEAGERY ILCQNLSSLM WIANQGALEL 400
    HLPFQKAGAS FPDEIVIDLD PPDQNHFHLA VSAASLLKPL MEKLNIKSFI 450
    KTSGNKGMQI HIPIPERTLS YEETRKLTET FARVLVEQEP DLFTIERLKK 500
    KRGDRLYIDY VQHAEGKTII APYSARATKE ATVATPVYWE EVTKNLDPRS 550
    FTIKSIVERI ERVGCPFSNY EKARYEQPID QLRNVISDK 589
    Length:589
    Mass (Da):68,449
    Last modified:June 13, 2012 - v1
    Checksum:i142EFB5BA24A2218
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    HE717023 Genomic DNA. Translation: CCG47271.1.
    RefSeqiWP_014645155.1. NC_017668.1.
    YP_006182542.1. NC_017668.1.

    Genome annotation databases

    EnsemblBacteriaiCCG47271; CCG47271; HBHAL_4934.
    GeneIDi12747911.
    KEGGihhd:HBHAL_4934.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    HE717023 Genomic DNA. Translation: CCG47271.1 .
    RefSeqi WP_014645155.1. NC_017668.1.
    YP_006182542.1. NC_017668.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai CCG47271 ; CCG47271 ; HBHAL_4934 .
    GeneIDi 12747911.
    KEGGi hhd:HBHAL_4934.

    Phylogenomic databases

    KOi K01971.

    Enzyme and pathway databases

    BioCyci HHAL866895:GLDT-3970-MONOMER.

    Family and domain databases

    InterProi IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014145. LigD_pol.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view ]
    TIGRFAMsi TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Chloride and organic osmolytes: a hybrid strategy to cope with elevated salinities by the moderately halophilic, chloride-dependent bacterium Halobacillus halophilus."
      Saum S.H., Pfeiffer F., Palm P., Rampp M., Schuster S.C., Muller V., Oesterhelt D.
      Environ. Microbiol. 15:1619-1633(2013) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 35676 / DSM 2266 / JCM 20832 / NBRC 102448/ NCIMB 2269Imported.

    Entry informationi

    Entry nameiI0JSZ9_HALH3
    AccessioniPrimary (citable) accession number: I0JSZ9
    Entry historyi
    Integrated into UniProtKB/TrEMBL: June 13, 2012
    Last sequence update: June 13, 2012
    Last modified: October 1, 2014
    This is version 14 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3