I0JSZ9 (I0JSZ9_HALH3) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
ATP-dependent DNA ligase EMBL CCG47271.1
EC=6.5.1.1 EMBL CCG47271.1

Gene names

Name:	ligD EMBL CCG47271.1
Ordered Locus Names:	HBHAL_4934 EMBL CCG47271.1

Organism

Halobacillus halophilus (strain ATCC 35676 / DSM 2266 / JCM 20832 / NBRC 102448/ NCIMB 2269) (Sporosarcina halophila) [Complete proteome] [HAMAP] EMBL CCG47271.1

Taxonomic identifier

866895 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Firmicutes › Bacilli › Bacillales › Bacillaceae › Halobacillus › Halobacillus halophilus

Protein attributes

Sequence length	589 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL CCG47271.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	I0JSZ9 [UniParc]. Last modified June 13, 2012. Version 1. Checksum: 142EFB5BA24A2218	FASTA	589	68,449
	10 20 30 40 50 60 MVKPMLLTLT DDLPGSDEWM YEVKYDGFRV LLHVNEGNIT LTSRNGKDFT SQFPEISELK 70 80 90 100 110 120 IESDFSPFTL DGELVILNTP YQACFSALQQ RGRLRNADKI QRSARQRPAV FMAFDYLNEE 130 140 150 160 170 180 KASYIERKKI LEELLKTFRH PSIQAVESFP DLKEVEGLVH LHRGEGIIAK RKTSRYEAGV 190 200 210 220 230 240 RSKHWLKAKQ WRAASGFLTS YDQSNGYYQL QVEEKNNSLY PLGRFKHGMT AEEDHTLRNF 250 260 270 280 290 300 FKEKGTRKKQ VWELEPSVCV DIHCLNAEKG EMREPTFHQF RFDLSPSDCT LQKLKWDLSL 310 320 330 340 350 360 FPEQVEATNL SKELWNGLSK MDYLVYMRMV SPYLLRFLQD KKITLIRYPD GINQPSFYQK 370 380 390 400 410 420 HYPDHAPDYV DVFEEAGERY ILCQNLSSLM WIANQGALEL HLPFQKAGAS FPDEIVIDLD 430 440 450 460 470 480 PPDQNHFHLA VSAASLLKPL MEKLNIKSFI KTSGNKGMQI HIPIPERTLS YEETRKLTET 490 500 510 520 530 540 FARVLVEQEP DLFTIERLKK KRGDRLYIDY VQHAEGKTII APYSARATKE ATVATPVYWE 550 560 570 580 EVTKNLDPRS FTIKSIVERI ERVGCPFSNY EKARYEQPID QLRNVISDK

References

[1]

"Chloride and organic osmolytes: a hybrid strategy to cope with elevated salinities by the moderately halophilic, chloride-dependent bacterium Halobacillus halophilus." Saum S.H., Pfeiffer F., Palm P., Rampp M., Schuster S.C., Muller V., Oesterhelt D. Environ. Microbiol. 0:0-0(2012) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 35676 / DSM 2266 / JCM 20832 / NBRC 102448/ NCIMB 2269.

Cross-references

Sequence databases
EMBL GenBank DDBJ	HE717023 Genomic DNA. Translation: CCG47271.1.
RefSeq	YP_006182542.1. NC_017668.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	CCG47271; CCG47271; HBHAL_4934.
GeneID	12747911.
KEGG	hhd:HBHAL_4934.
Organism-specific databases
CMR	Search...
Phylogenomic databases
KO	K01971.
Family and domain databases
InterPro	IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR014146. DNA_pol_LigD_ligase_dom. IPR014145. LigD_pol. IPR014143. NHEJ_ligase_prk. [Graphical view]
Pfam	PF01068. DNA_ligase_A_M. 1 hit. [Graphical view]
TIGRFAMs	TIGR02778. ligD_pol. 1 hit. TIGR02779. NHEJ_ligase_lig. 1 hit. TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITE	PS00697. DNA_LIGASE_A1. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

I0JSZ9_HALH3

Accession

Primary (citable) accession number: I0JSZ9

Entry history

Integrated into UniProtKB/TrEMBL:	June 13, 2012
Last sequence update:	June 13, 2012
Last modified:	April 3, 2013
This is version 6 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)