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I0JSZ9

- I0JSZ9_HALH3

UniProt

I0JSZ9 - I0JSZ9_HALH3

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Protein
Submitted name:

ATP-dependent DNA ligase

Gene

ligD

Organism
Halobacillus halophilus (strain ATCC 35676 / DSM 2266 / JCM 20832 / NBRC 102448/ NCIMB 2269) (Sporosarcina halophila)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciHHAL866895:GLDT-3970-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligaseImported (EC:6.5.1.1Imported)
Gene namesi
Name:ligDImported
Ordered Locus Names:HBHAL_4934Imported
OrganismiHalobacillus halophilus (strain ATCC 35676 / DSM 2266 / JCM 20832 / NBRC 102448/ NCIMB 2269) (Sporosarcina halophila)Imported
Taxonomic identifieri866895 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeHalobacillus
ProteomesiUP000007397: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014145. LigD_pol.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

I0JSZ9-1 [UniParc]FASTAAdd to Basket

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        10         20         30         40         50
MVKPMLLTLT DDLPGSDEWM YEVKYDGFRV LLHVNEGNIT LTSRNGKDFT
60 70 80 90 100
SQFPEISELK IESDFSPFTL DGELVILNTP YQACFSALQQ RGRLRNADKI
110 120 130 140 150
QRSARQRPAV FMAFDYLNEE KASYIERKKI LEELLKTFRH PSIQAVESFP
160 170 180 190 200
DLKEVEGLVH LHRGEGIIAK RKTSRYEAGV RSKHWLKAKQ WRAASGFLTS
210 220 230 240 250
YDQSNGYYQL QVEEKNNSLY PLGRFKHGMT AEEDHTLRNF FKEKGTRKKQ
260 270 280 290 300
VWELEPSVCV DIHCLNAEKG EMREPTFHQF RFDLSPSDCT LQKLKWDLSL
310 320 330 340 350
FPEQVEATNL SKELWNGLSK MDYLVYMRMV SPYLLRFLQD KKITLIRYPD
360 370 380 390 400
GINQPSFYQK HYPDHAPDYV DVFEEAGERY ILCQNLSSLM WIANQGALEL
410 420 430 440 450
HLPFQKAGAS FPDEIVIDLD PPDQNHFHLA VSAASLLKPL MEKLNIKSFI
460 470 480 490 500
KTSGNKGMQI HIPIPERTLS YEETRKLTET FARVLVEQEP DLFTIERLKK
510 520 530 540 550
KRGDRLYIDY VQHAEGKTII APYSARATKE ATVATPVYWE EVTKNLDPRS
560 570 580
FTIKSIVERI ERVGCPFSNY EKARYEQPID QLRNVISDK
Length:589
Mass (Da):68,449
Last modified:June 13, 2012 - v1
Checksum:i142EFB5BA24A2218
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
HE717023 Genomic DNA. Translation: CCG47271.1.
RefSeqiWP_014645155.1. NC_017668.1.
YP_006182542.1. NC_017668.1.

Genome annotation databases

EnsemblBacteriaiCCG47271; CCG47271; HBHAL_4934.
GeneIDi12747911.
KEGGihhd:HBHAL_4934.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
HE717023 Genomic DNA. Translation: CCG47271.1 .
RefSeqi WP_014645155.1. NC_017668.1.
YP_006182542.1. NC_017668.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai CCG47271 ; CCG47271 ; HBHAL_4934 .
GeneIDi 12747911.
KEGGi hhd:HBHAL_4934.

Phylogenomic databases

KOi K01971.

Enzyme and pathway databases

BioCyci HHAL866895:GLDT-3970-MONOMER.

Family and domain databases

InterProi IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014145. LigD_pol.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view ]
TIGRFAMsi TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Chloride and organic osmolytes: a hybrid strategy to cope with elevated salinities by the moderately halophilic, chloride-dependent bacterium Halobacillus halophilus."
    Saum S.H., Pfeiffer F., Palm P., Rampp M., Schuster S.C., Muller V., Oesterhelt D.
    Environ. Microbiol. 15:1619-1633(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 35676 / DSM 2266 / JCM 20832 / NBRC 102448/ NCIMB 2269Imported.

Entry informationi

Entry nameiI0JSZ9_HALH3
AccessioniPrimary (citable) accession number: I0JSZ9
Entry historyi
Integrated into UniProtKB/TrEMBL: June 13, 2012
Last sequence update: June 13, 2012
Last modified: October 1, 2014
This is version 14 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3