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I0JSZ9 (I0JSZ9_HALH3) Unreviewed, UniProtKB/TrEMBL

Last modified December 11, 2013. Version 12. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length589 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL CCG47271.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA ligation involved in DNA repair

Inferred from electronic annotation. Source: InterPro

DNA recombination

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: UniProtKB-EC

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
I0JSZ9 [UniParc].

Last modified June 13, 2012. Version 1.
Checksum: 142EFB5BA24A2218

FASTA58968,449
        10         20         30         40         50         60 
MVKPMLLTLT DDLPGSDEWM YEVKYDGFRV LLHVNEGNIT LTSRNGKDFT SQFPEISELK 

        70         80         90        100        110        120 
IESDFSPFTL DGELVILNTP YQACFSALQQ RGRLRNADKI QRSARQRPAV FMAFDYLNEE 

       130        140        150        160        170        180 
KASYIERKKI LEELLKTFRH PSIQAVESFP DLKEVEGLVH LHRGEGIIAK RKTSRYEAGV 

       190        200        210        220        230        240 
RSKHWLKAKQ WRAASGFLTS YDQSNGYYQL QVEEKNNSLY PLGRFKHGMT AEEDHTLRNF 

       250        260        270        280        290        300 
FKEKGTRKKQ VWELEPSVCV DIHCLNAEKG EMREPTFHQF RFDLSPSDCT LQKLKWDLSL 

       310        320        330        340        350        360 
FPEQVEATNL SKELWNGLSK MDYLVYMRMV SPYLLRFLQD KKITLIRYPD GINQPSFYQK 

       370        380        390        400        410        420 
HYPDHAPDYV DVFEEAGERY ILCQNLSSLM WIANQGALEL HLPFQKAGAS FPDEIVIDLD 

       430        440        450        460        470        480 
PPDQNHFHLA VSAASLLKPL MEKLNIKSFI KTSGNKGMQI HIPIPERTLS YEETRKLTET 

       490        500        510        520        530        540 
FARVLVEQEP DLFTIERLKK KRGDRLYIDY VQHAEGKTII APYSARATKE ATVATPVYWE 

       550        560        570        580 
EVTKNLDPRS FTIKSIVERI ERVGCPFSNY EKARYEQPID QLRNVISDK 

« Hide

References

[1]"Chloride and organic osmolytes: a hybrid strategy to cope with elevated salinities by the moderately halophilic, chloride-dependent bacterium Halobacillus halophilus."
Saum S.H., Pfeiffer F., Palm P., Rampp M., Schuster S.C., Muller V., Oesterhelt D.
Environ. Microbiol. 15:1619-1633(2013) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 35676 / DSM 2266 / JCM 20832 / NBRC 102448/ NCIMB 2269.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
HE717023 Genomic DNA. Translation: CCG47271.1.
RefSeqYP_006182542.1. NC_017668.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCCG47271; CCG47271; HBHAL_4934.
GeneID12747911.
KEGGhhd:HBHAL_4934.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01971.

Enzyme and pathway databases

BioCycHHAL866895:GLDT-3970-MONOMER.

Family and domain databases

InterProIPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014145. LigD_pol.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamPF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
TIGRFAMsTIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEPS00697. DNA_LIGASE_A1. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameI0JSZ9_HALH3
AccessionPrimary (citable) accession number: I0JSZ9
Entry history
Integrated into UniProtKB/TrEMBL: June 13, 2012
Last sequence update: June 13, 2012
Last modified: December 11, 2013
This is version 12 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)