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I0IMF5

- I0IMF5_LEPFC

UniProt

I0IMF5 - I0IMF5_LEPFC

Protein

DNA ligase

Gene

LFE_0739

Organism
Leptospirillum ferrooxidans (strain C2-3)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 11 (01 Oct 2014)
      Sequence version 1 (13 Jun 2012)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).

    GO - Molecular functioni

    1. ATP binding Source: UniProtKB-KW
    2. DNA binding Source: InterPro
    3. DNA ligase (ATP) activity Source: UniProtKB-EC

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: UniProtKB-KW
    3. DNA replication Source: UniProtKB-KW

    Keywords - Molecular functioni

    LigaseUniRule annotationImported

    Keywords - Biological processi

    DNA damage, DNA recombinationUniRule annotation, DNA repairUniRule annotation, DNA replicationUniRule annotation

    Keywords - Ligandi

    ATP-bindingUniRule annotation, Nucleotide-binding

    Enzyme and pathway databases

    BioCyciLFER1162668:GLFM-737-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    DNA ligaseUniRule annotation (EC:6.5.1.1UniRule annotation)
    Gene namesi
    Ordered Locus Names:LFE_0739Imported
    OrganismiLeptospirillum ferrooxidans (strain C2-3)Imported
    Taxonomic identifieri1162668 [NCBI]
    Taxonomic lineageiBacteriaNitrospiraeNitrospiralesNitrospiraceaeLeptospirillum
    ProteomesiUP000007382: Chromosome

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ATP-dependent DNA ligase family.UniRule annotation

    Phylogenomic databases

    KOiK10747.

    Family and domain databases

    Gene3Di1.10.3260.10. 1 hit.
    2.40.50.140. 1 hit.
    InterProiIPR000977. DNA_ligase_ATP-dep.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR00574. dnl1. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    PS00333. DNA_LIGASE_A2. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    I0IMF5-1 [UniParc]FASTAAdd to Basket

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    MGFCIDEISE DFSKMEAIKG RTELAGILGN LFLRCDEEEI APLVYVVQGQ    50
    LSPPFRGEPM GMASRLLIRA LSEVKAKKTF SDLNPEEAKK MEKSLDVMLA 100
    HLGDPGALAQ EVLSQNSPSR LSFLDVFRIL ERLSQMEGEG SQVDKVSELA 150
    TLLSRLSPLS ARFVARFVMG KLRLGVGDST IIEALAVSGG GRATKSIVEK 200
    AYNICSDLGL VGRKIKQGGL ESLSSLEPSP GFPIRVALCE RLSSGEDIIA 250
    KIGRCSIESK YDGFRCQIHI IAGKVEIFSR NLDSMTSMFP EIVRATKEIF 300
    GNRSAIFEGE ALGIDPETGT YQPFQVTITR KRKHNVLEKS LEIPLRLLVF 350
    DLLYLDGVSW MERPFFERRA KVETLFGAEK FDILEVERPP AGVIGSSRLI 400
    FTDEASKVNE FFEEVVEEGF EGIIAKRLDG IYTAGSRNFN WIKLKKSYQG 450
    KISDTLDLVI IGYYLGKGQR LKLGIGAILA AVWDRDSKSF ASIARIGSGL 500
    TEEKWMMLSA MLREIVVPER PVDVMSDVVP DFWVLPRFVV TVRADEISRS 550
    SMHAAGRDYL SNTEGTPEGY ALRFPRMVSF VRADKKPEDA TEVSEIVSLF 600
    DLQRSLSQRS QREKPSSVRK 620
    Length:620
    Mass (Da):68,987
    Last modified:June 13, 2012 - v1
    Checksum:iBE0E0FF6920BA43C
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP012342 Genomic DNA. Translation: BAM06454.1.
    RefSeqiYP_005468584.1. NC_017094.1.

    Genome annotation databases

    EnsemblBacteriaiBAM06454; BAM06454; LFE_0739.
    GeneIDi12055547.
    KEGGilfc:LFE_0739.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP012342 Genomic DNA. Translation: BAM06454.1 .
    RefSeqi YP_005468584.1. NC_017094.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai BAM06454 ; BAM06454 ; LFE_0739 .
    GeneIDi 12055547.
    KEGGi lfc:LFE_0739.

    Phylogenomic databases

    KOi K10747.

    Enzyme and pathway databases

    BioCyci LFER1162668:GLFM-737-MONOMER.

    Family and domain databases

    Gene3Di 1.10.3260.10. 1 hit.
    2.40.50.140. 1 hit.
    InterProi IPR000977. DNA_ligase_ATP-dep.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR00574. dnl1. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    PS00333. DNA_LIGASE_A2. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The complete genome sequence of the pioneer microbe on fresh volcanic deposit, Leptospirillum ferrooxidans strain C2-3."
      Fujimura R., Sato Y., Nishizawa T., Nanba K., Oshima K., Hattori M., Kamijo T., Ohta H.
      Submitted (MAR-2012) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: C2-3Imported.

    Entry informationi

    Entry nameiI0IMF5_LEPFC
    AccessioniPrimary (citable) accession number: I0IMF5
    Entry historyi
    Integrated into UniProtKB/TrEMBL: June 13, 2012
    Last sequence update: June 13, 2012
    Last modified: October 1, 2014
    This is version 11 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3