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I0IMF5 (I0IMF5_LEPFC) Unreviewed, UniProtKB/TrEMBL

Last modified December 11, 2013. Version 10. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein attributes

Sequence length620 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).

Sequence similarities

Belongs to the ATP-dependent DNA ligase family. RuleBase RU004196

Sequences

Sequence LengthMass (Da)Tools
I0IMF5 [UniParc].

Last modified June 13, 2012. Version 1.
Checksum: BE0E0FF6920BA43C

FASTA62068,987
        10         20         30         40         50         60 
MGFCIDEISE DFSKMEAIKG RTELAGILGN LFLRCDEEEI APLVYVVQGQ LSPPFRGEPM 

        70         80         90        100        110        120 
GMASRLLIRA LSEVKAKKTF SDLNPEEAKK MEKSLDVMLA HLGDPGALAQ EVLSQNSPSR 

       130        140        150        160        170        180 
LSFLDVFRIL ERLSQMEGEG SQVDKVSELA TLLSRLSPLS ARFVARFVMG KLRLGVGDST 

       190        200        210        220        230        240 
IIEALAVSGG GRATKSIVEK AYNICSDLGL VGRKIKQGGL ESLSSLEPSP GFPIRVALCE 

       250        260        270        280        290        300 
RLSSGEDIIA KIGRCSIESK YDGFRCQIHI IAGKVEIFSR NLDSMTSMFP EIVRATKEIF 

       310        320        330        340        350        360 
GNRSAIFEGE ALGIDPETGT YQPFQVTITR KRKHNVLEKS LEIPLRLLVF DLLYLDGVSW 

       370        380        390        400        410        420 
MERPFFERRA KVETLFGAEK FDILEVERPP AGVIGSSRLI FTDEASKVNE FFEEVVEEGF 

       430        440        450        460        470        480 
EGIIAKRLDG IYTAGSRNFN WIKLKKSYQG KISDTLDLVI IGYYLGKGQR LKLGIGAILA 

       490        500        510        520        530        540 
AVWDRDSKSF ASIARIGSGL TEEKWMMLSA MLREIVVPER PVDVMSDVVP DFWVLPRFVV 

       550        560        570        580        590        600 
TVRADEISRS SMHAAGRDYL SNTEGTPEGY ALRFPRMVSF VRADKKPEDA TEVSEIVSLF 

       610        620 
DLQRSLSQRS QREKPSSVRK 

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References

[1]"The complete genome sequence of the pioneer microbe on fresh volcanic deposit, Leptospirillum ferrooxidans strain C2-3."
Fujimura R., Sato Y., Nishizawa T., Nanba K., Oshima K., Hattori M., Kamijo T., Ohta H.
Submitted (MAR-2012) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: C2-3.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AP012342 Genomic DNA. Translation: BAM06454.1.
RefSeqYP_005468584.1. NC_017094.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAM06454; BAM06454; LFE_0739.
GeneID12055547.
KEGGlfc:LFE_0739.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK10747.

Enzyme and pathway databases

BioCycLFER1162668:GLFM-737-MONOMER.

Family and domain databases

Gene3D1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
InterProIPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR00574. dnl1. 1 hit.
PROSITEPS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameI0IMF5_LEPFC
AccessionPrimary (citable) accession number: I0IMF5
Entry history
Integrated into UniProtKB/TrEMBL: June 13, 2012
Last sequence update: June 13, 2012
Last modified: December 11, 2013
This is version 10 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)