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Protein

DNA ligase

Gene

LFE_0739

Organism
Leptospirillum ferrooxidans (strain C2-3)
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

Catalytic activityi

ATP + (deoxyribonucleotide)(n)-3'-hydroxyl + 5'-phospho-(deoxyribonucleotide)(m) = (deoxyribonucleotide)(n+m) + AMP + diphosphate.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionLigaseUniRule annotationImported
Biological processDNA damage, DNA recombinationUniRule annotation, DNA repairUniRule annotation, DNA replicationUniRule annotation
LigandATP-bindingUniRule annotation, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
DNA ligaseUniRule annotation (EC:6.5.1.1UniRule annotation)
Gene namesi
Ordered Locus Names:LFE_0739Imported
OrganismiLeptospirillum ferrooxidans (strain C2-3)Imported
Taxonomic identifieri1162668 [NCBI]
Taxonomic lineageiBacteriaNitrospiraeNitrospiralesNitrospiraceaeLeptospirillum
Proteomesi
  • UP000007382 Componenti: Chromosome

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini338 – 470DNA_LIGASE_A3InterPro annotationAdd BLAST133

Sequence similaritiesi

Belongs to the ATP-dependent DNA ligase family.UniRule annotation

Phylogenomic databases

KOiK10747
OMAiWIKYKRD
OrthoDBiPOG091H09SJ

Family and domain databases

Gene3Di1.10.3260.10, 1 hit
InterProiView protein in InterPro
IPR000977 DNA_ligase_ATP-dep
IPR012309 DNA_ligase_ATP-dep_C
IPR012310 DNA_ligase_ATP-dep_cent
IPR016059 DNA_ligase_ATP-dep_CS
IPR012308 DNA_ligase_ATP-dep_N
IPR036599 DNA_ligase_N_sf
IPR012340 NA-bd_OB-fold
PfamiView protein in Pfam
PF04679 DNA_ligase_A_C, 1 hit
PF01068 DNA_ligase_A_M, 1 hit
PF04675 DNA_ligase_A_N, 1 hit
SUPFAMiSSF117018 SSF117018, 1 hit
SSF50249 SSF50249, 1 hit
TIGRFAMsiTIGR00574 dnl1, 1 hit
PROSITEiView protein in PROSITE
PS00697 DNA_LIGASE_A1, 1 hit
PS00333 DNA_LIGASE_A2, 1 hit
PS50160 DNA_LIGASE_A3, 1 hit

Sequencei

Sequence statusi: Complete.

I0IMF5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGFCIDEISE DFSKMEAIKG RTELAGILGN LFLRCDEEEI APLVYVVQGQ
60 70 80 90 100
LSPPFRGEPM GMASRLLIRA LSEVKAKKTF SDLNPEEAKK MEKSLDVMLA
110 120 130 140 150
HLGDPGALAQ EVLSQNSPSR LSFLDVFRIL ERLSQMEGEG SQVDKVSELA
160 170 180 190 200
TLLSRLSPLS ARFVARFVMG KLRLGVGDST IIEALAVSGG GRATKSIVEK
210 220 230 240 250
AYNICSDLGL VGRKIKQGGL ESLSSLEPSP GFPIRVALCE RLSSGEDIIA
260 270 280 290 300
KIGRCSIESK YDGFRCQIHI IAGKVEIFSR NLDSMTSMFP EIVRATKEIF
310 320 330 340 350
GNRSAIFEGE ALGIDPETGT YQPFQVTITR KRKHNVLEKS LEIPLRLLVF
360 370 380 390 400
DLLYLDGVSW MERPFFERRA KVETLFGAEK FDILEVERPP AGVIGSSRLI
410 420 430 440 450
FTDEASKVNE FFEEVVEEGF EGIIAKRLDG IYTAGSRNFN WIKLKKSYQG
460 470 480 490 500
KISDTLDLVI IGYYLGKGQR LKLGIGAILA AVWDRDSKSF ASIARIGSGL
510 520 530 540 550
TEEKWMMLSA MLREIVVPER PVDVMSDVVP DFWVLPRFVV TVRADEISRS
560 570 580 590 600
SMHAAGRDYL SNTEGTPEGY ALRFPRMVSF VRADKKPEDA TEVSEIVSLF
610 620
DLQRSLSQRS QREKPSSVRK
Length:620
Mass (Da):68,987
Last modified:June 13, 2012 - v1
Checksum:iBE0E0FF6920BA43C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP012342 Genomic DNA Translation: BAM06454.1

Genome annotation databases

EnsemblBacteriaiBAM06454; BAM06454; LFE_0739
KEGGilfc:LFE_0739
PATRICifig|1162668.3.peg.870

Similar proteinsi

Entry informationi

Entry nameiI0IMF5_LEPFC
AccessioniPrimary (citable) accession number: I0IMF5
Entry historyiIntegrated into UniProtKB/TrEMBL: June 13, 2012
Last sequence update: June 13, 2012
Last modified: March 28, 2018
This is version 26 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

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