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I0IMF5

- I0IMF5_LEPFC

UniProt

I0IMF5 - I0IMF5_LEPFC

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Protein

DNA ligase

Gene
LFE_0739
Organism
Leptospirillum ferrooxidans (strain C2-3)
Status
Unreviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Catalytic activityi

ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-KW
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: UniProtKB-KW
  3. DNA replication Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

LigaseUniRule annotationImported

Keywords - Biological processi

DNA damage, DNA recombinationUniRule annotation, DNA repairUniRule annotation, DNA replicationUniRule annotation

Keywords - Ligandi

ATP-bindingUniRule annotation, Nucleotide-binding

Enzyme and pathway databases

BioCyciLFER1162668:GLFM-737-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
DNA ligaseUniRule annotation (EC:6.5.1.1UniRule annotation)
Gene namesi
Ordered Locus Names:LFE_0739Imported
OrganismiLeptospirillum ferrooxidans (strain C2-3)Imported
Taxonomic identifieri1162668 [NCBI]
Taxonomic lineageiBacteriaNitrospiraeNitrospiralesNitrospiraceaeLeptospirillum
ProteomesiUP000007382: Chromosome

Family & Domainsi

Sequence similaritiesi

Belongs to the ATP-dependent DNA ligase family.UniRule annotation

Phylogenomic databases

KOiK10747.

Family and domain databases

Gene3Di1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
InterProiIPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR00574. dnl1. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

I0IMF5-1 [UniParc]FASTAAdd to Basket

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MGFCIDEISE DFSKMEAIKG RTELAGILGN LFLRCDEEEI APLVYVVQGQ    50
LSPPFRGEPM GMASRLLIRA LSEVKAKKTF SDLNPEEAKK MEKSLDVMLA 100
HLGDPGALAQ EVLSQNSPSR LSFLDVFRIL ERLSQMEGEG SQVDKVSELA 150
TLLSRLSPLS ARFVARFVMG KLRLGVGDST IIEALAVSGG GRATKSIVEK 200
AYNICSDLGL VGRKIKQGGL ESLSSLEPSP GFPIRVALCE RLSSGEDIIA 250
KIGRCSIESK YDGFRCQIHI IAGKVEIFSR NLDSMTSMFP EIVRATKEIF 300
GNRSAIFEGE ALGIDPETGT YQPFQVTITR KRKHNVLEKS LEIPLRLLVF 350
DLLYLDGVSW MERPFFERRA KVETLFGAEK FDILEVERPP AGVIGSSRLI 400
FTDEASKVNE FFEEVVEEGF EGIIAKRLDG IYTAGSRNFN WIKLKKSYQG 450
KISDTLDLVI IGYYLGKGQR LKLGIGAILA AVWDRDSKSF ASIARIGSGL 500
TEEKWMMLSA MLREIVVPER PVDVMSDVVP DFWVLPRFVV TVRADEISRS 550
SMHAAGRDYL SNTEGTPEGY ALRFPRMVSF VRADKKPEDA TEVSEIVSLF 600
DLQRSLSQRS QREKPSSVRK 620
Length:620
Mass (Da):68,987
Last modified:June 13, 2012 - v1
Checksum:iBE0E0FF6920BA43C
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AP012342 Genomic DNA. Translation: BAM06454.1.
RefSeqiYP_005468584.1. NC_017094.1.

Genome annotation databases

EnsemblBacteriaiBAM06454; BAM06454; LFE_0739.
GeneIDi12055547.
KEGGilfc:LFE_0739.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AP012342 Genomic DNA. Translation: BAM06454.1 .
RefSeqi YP_005468584.1. NC_017094.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai BAM06454 ; BAM06454 ; LFE_0739 .
GeneIDi 12055547.
KEGGi lfc:LFE_0739.

Phylogenomic databases

KOi K10747.

Enzyme and pathway databases

BioCyci LFER1162668:GLFM-737-MONOMER.

Family and domain databases

Gene3Di 1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
InterProi IPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view ]
SUPFAMi SSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR00574. dnl1. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "The complete genome sequence of the pioneer microbe on fresh volcanic deposit, Leptospirillum ferrooxidans strain C2-3."
    Fujimura R., Sato Y., Nishizawa T., Nanba K., Oshima K., Hattori M., Kamijo T., Ohta H.
    Submitted (MAR-2012) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: C2-3.

Entry informationi

Entry nameiI0IMF5_LEPFC
AccessioniPrimary (citable) accession number: I0IMF5
Entry historyi
Integrated into UniProtKB/TrEMBL: June 13, 2012
Last sequence update: June 13, 2012
Last modified: December 11, 2013
This is version 10 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

Similar proteinsi