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I0IG29 (I0IG29_PHYMF) Unreviewed, UniProtKB/TrEMBL

Last modified April 3, 2013. Version 10. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
D-alanine--D-alanine ligase EMBL BAM04217.1
EC=6.3.2.4 EMBL BAM04217.1
Gene names
Name:ddl EMBL BAM04217.1
Ordered Locus Names:PSMK_20580 EMBL BAM04217.1
OrganismPhycisphaera mikurensis (strain NBRC 102666 / KCTC 22515 / FYK2301M01) [Complete proteome] [HAMAP] EMBL BAM04217.1
Taxonomic identifier1142394 [NCBI]
Taxonomic lineageBacteria › Planctomycetes › Phycisphaerae › Phycisphaerales › Phycisphaeraceae › Phycisphaera ›

Protein attributes

Sequence length303 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Cell wall formation By similarity. SAAS SAAS005905

Catalytic activity

ATP + 2 D-alanine = ADP + phosphate + D-alanyl-D-alanine. SAAS SAAS005905

Cofactor

Binds 2 magnesium or manganese ions per subunit By similarity. SAAS SAAS005905

Pathway

Cell wall biogenesis; peptidoglycan biosynthesis. SAAS SAAS005905

Subcellular location

Cytoplasm By similarity SAAS SAAS005905.

Sequence similarities

Contains 1 ATP-grasp domain. SAAS SAAS005905

Sequences

Sequence LengthMass (Da)Tools
I0IG29 [UniParc].

Last modified June 13, 2012. Version 1.
Checksum: C1C71B2569657620

FASTA30331,670
        10         20         30         40         50         60 
MEASPAVLVI SGGPDREREV SLRSGAVVAE AAQAAGFGVT TCDLGPDDTA GLDGFLAAHP 

        70         80         90        100        110        120 
GGVVLPILHG PWGEGGGAQR LLESRGAVFV GCDRVAAERC MHKAATKERL VRAGVPTPPH 

       130        140        150        160        170        180 
ELLLGGAEPT LSPPAVLKPE ADGSSIDLAI CTTAEQLRAA HARLKRGNPR LLCERFVAGK 

       190        200        210        220        230        240 
ELTVGWLLGR TLPTIWIRPA TGHYDYAAKY DRDDTAYAFD LEEPEAVAAA VREAAEAGCV 

       250        260        270        280        290        300 
ALGVRDLARV DVMLDAAGVP WVLEINTMPG FTEHSLLPKA AAEAGLAMPD LVRSLVEAAA 


ARR

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References

[1]"Complete genome sequence of Phycisphaera mikurensis NBRC 102666."
Ankai A., Hosoyama A., Terui Y., Sekine M., Fukai R., Kato Y., Nakamura S., Yamada-Narita S., Kawakoshi A., Fukunaga Y., Yamazaki S., Fujita N.
Submitted (FEB-2012) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NBRC 102666 / KCTC 22515 / FYK2301M01.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AP012338 Genomic DNA. Translation: BAM04217.1.
RefSeqYP_005446114.1. NC_017080.1.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAM04217; BAM04217; PSMK_20580.
GeneID12035868.
KEGGphm:PSMK_20580.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01921.

Enzyme and pathway databases

UniPathwayUPA00219.

Family and domain databases

Gene3D3.30.1490.20. 1 hit.
3.30.470.20. 2 hits.
3.40.50.20. 1 hit.
InterProIPR011761. ATP-grasp.
IPR013815. ATP_grasp_subdomain_1.
IPR013816. ATP_grasp_subdomain_2.
IPR000291. D-Ala_lig_Van_CS.
IPR005905. D_ala_D_ala.
IPR011095. Dala_Dala_lig_C.
IPR011127. Dala_Dala_lig_N.
IPR016185. PreATP-grasp_dom.
[Graphical view]
PANTHERPTHR23132. PTHR23132. 1 hit.
PfamPF07478. Dala_Dala_lig_C. 1 hit.
PF01820. Dala_Dala_lig_N. 1 hit.
[Graphical view]
SUPFAMSSF52440. PreATP-grasp-like. 1 hit.
PROSITEPS50975. ATP_GRASP. 1 hit.
PS00844. DALA_DALA_LIGASE_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameI0IG29_PHYMF
AccessionPrimary (citable) accession number: I0IG29
Entry history
Integrated into UniProtKB/TrEMBL: June 13, 2012
Last sequence update: June 13, 2012
Last modified: April 3, 2013
This is version 10 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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