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Protein
Submitted name:

Putative DNA ligase

Gene

PSMK_10810

Organism
Phycisphaera mikurensis (strain NBRC 102666 / KCTC 22515 / FYK2301M01)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciPMIK1142394:GLIF-1098-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Putative DNA ligaseImported (EC:6.5.1.-Imported)
Gene namesi
Ordered Locus Names:PSMK_10810Imported
OrganismiPhycisphaera mikurensis (strain NBRC 102666 / KCTC 22515 / FYK2301M01)Imported
Taxonomic identifieri1142394 [NCBI]
Taxonomic lineageiBacteriaPlanctomycetesPhycisphaeraePhycisphaeralesPhycisphaeraceaePhycisphaera
ProteomesiUP000007881 Componenti: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK10747.
OMAiAAWAVYF.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

I0IDA2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKSFTALFTA VDRTTRTSEK TAAIAAYFRE ADADDAAWAL AVLTGTSLIR
60 70 80 90 100
RVPYNRLRAF CGEATGLPAW LIAESHSVVG DLSETLSLLL PPPTAAGEDE
110 120 130 140 150
SLTSIIETRV LPLERMSEGQ QRTAILATWN RLDATQRLVF HKLISGNFRF
160 170 180 190 200
GAAKKVVINA LAEATGVPAA VMQHRMTGGF SPTRSAWERV TAPDRPGGQA
210 220 230 240 250
AGSGGSGGGA DADAAADDAA RPYPFCLAQQ LQATPREKLG DRSDWSVEWK
260 270 280 290 300
WDGIRCQLLR RGGSARLWSR GEELITGTFP EVAAAASTLP EGTVLDGEIL
310 320 330 340 350
AWRNADGSAD RHAFELQTPT VRGLPEPFAV LQRRLNRRAR HPALFEDRPV
360 370 380 390 400
VFMAYDVLEL GGADLRTEPT HQRRAALEAL AADAFHASGG KLLLSPAVEG
410 420 430 440 450
GSWDSLGALR ASSRARNVEG FMLKRRDAPY GIGRAMTRES GDERGLWWKW
460 470 480 490 500
KVDPYAIDAV MIYAQRGTGR RSTLYTDYTF ALWTGEQPGR GELVPVTKAY
510 520 530 540 550
SGLTDAEFAR VDAFIKGHRR GGRGAFCEVE PSRVFEIAFD GVQESKRHRS
560 570 580
GLALRFPRMA RIRDDKRADE ADTVGFLRGL I
Length:581
Mass (Da):63,484
Last modified:June 13, 2012 - v1
Checksum:iC0F34491458A4EA0
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP012338 Genomic DNA. Translation: BAM03240.1.
RefSeqiWP_014436459.1. NC_017080.1.

Genome annotation databases

EnsemblBacteriaiBAM03240; BAM03240; PSMK_10810.
KEGGiphm:PSMK_10810.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP012338 Genomic DNA. Translation: BAM03240.1.
RefSeqiWP_014436459.1. NC_017080.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAM03240; BAM03240; PSMK_10810.
KEGGiphm:PSMK_10810.

Phylogenomic databases

KOiK10747.
OMAiAAWAVYF.

Enzyme and pathway databases

BioCyciPMIK1142394:GLIF-1098-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete genome sequence of Phycisphaera mikurensis NBRC 102666."
    Ankai A., Hosoyama A., Terui Y., Sekine M., Fukai R., Kato Y., Nakamura S., Yamada-Narita S., Kawakoshi A., Fukunaga Y., Yamazaki S., Fujita N.
    Submitted (FEB-2012) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NBRC 102666 / KCTC 22515 / FYK2301M01Imported.

Entry informationi

Entry nameiI0IDA2_PHYMF
AccessioniPrimary (citable) accession number: I0IDA2
Entry historyi
Integrated into UniProtKB/TrEMBL: June 13, 2012
Last sequence update: June 13, 2012
Last modified: July 22, 2015
This is version 16 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.