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I0IDA2

- I0IDA2_PHYMF

UniProt

I0IDA2 - I0IDA2_PHYMF

Protein
Submitted name:

Putative DNA ligase

Gene

PSMK_10810

Organism
Phycisphaera mikurensis (strain NBRC 102666 / KCTC 22515 / FYK2301M01)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 11 (01 Oct 2014)
      Sequence version 1 (13 Jun 2012)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA binding Source: InterPro
    3. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciPMIK1142394:GLIF-1098-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Putative DNA ligaseImported (EC:6.5.1.-Imported)
    Gene namesi
    Ordered Locus Names:PSMK_10810Imported
    OrganismiPhycisphaera mikurensis (strain NBRC 102666 / KCTC 22515 / FYK2301M01)Imported
    Taxonomic identifieri1142394 [NCBI]
    Taxonomic lineageiBacteriaPlanctomycetesPhycisphaeraePhycisphaeralesPhycisphaeraceaePhycisphaera
    ProteomesiUP000007881: Chromosome

    Family & Domainsi

    Phylogenomic databases

    KOiK01971.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    I0IDA2-1 [UniParc]FASTAAdd to Basket

    « Hide

    MKSFTALFTA VDRTTRTSEK TAAIAAYFRE ADADDAAWAL AVLTGTSLIR    50
    RVPYNRLRAF CGEATGLPAW LIAESHSVVG DLSETLSLLL PPPTAAGEDE 100
    SLTSIIETRV LPLERMSEGQ QRTAILATWN RLDATQRLVF HKLISGNFRF 150
    GAAKKVVINA LAEATGVPAA VMQHRMTGGF SPTRSAWERV TAPDRPGGQA 200
    AGSGGSGGGA DADAAADDAA RPYPFCLAQQ LQATPREKLG DRSDWSVEWK 250
    WDGIRCQLLR RGGSARLWSR GEELITGTFP EVAAAASTLP EGTVLDGEIL 300
    AWRNADGSAD RHAFELQTPT VRGLPEPFAV LQRRLNRRAR HPALFEDRPV 350
    VFMAYDVLEL GGADLRTEPT HQRRAALEAL AADAFHASGG KLLLSPAVEG 400
    GSWDSLGALR ASSRARNVEG FMLKRRDAPY GIGRAMTRES GDERGLWWKW 450
    KVDPYAIDAV MIYAQRGTGR RSTLYTDYTF ALWTGEQPGR GELVPVTKAY 500
    SGLTDAEFAR VDAFIKGHRR GGRGAFCEVE PSRVFEIAFD GVQESKRHRS 550
    GLALRFPRMA RIRDDKRADE ADTVGFLRGL I 581
    Length:581
    Mass (Da):63,484
    Last modified:June 13, 2012 - v1
    Checksum:iC0F34491458A4EA0
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP012338 Genomic DNA. Translation: BAM03240.1.
    RefSeqiWP_014436459.1. NC_017080.1.
    YP_005445137.1. NC_017080.1.

    Genome annotation databases

    EnsemblBacteriaiBAM03240; BAM03240; PSMK_10810.
    GeneIDi12037576.
    KEGGiphm:PSMK_10810.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP012338 Genomic DNA. Translation: BAM03240.1 .
    RefSeqi WP_014436459.1. NC_017080.1.
    YP_005445137.1. NC_017080.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai BAM03240 ; BAM03240 ; PSMK_10810 .
    GeneIDi 12037576.
    KEGGi phm:PSMK_10810.

    Phylogenomic databases

    KOi K01971.

    Enzyme and pathway databases

    BioCyci PMIK1142394:GLIF-1098-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete genome sequence of Phycisphaera mikurensis NBRC 102666."
      Ankai A., Hosoyama A., Terui Y., Sekine M., Fukai R., Kato Y., Nakamura S., Yamada-Narita S., Kawakoshi A., Fukunaga Y., Yamazaki S., Fujita N.
      Submitted (FEB-2012) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: NBRC 102666 / KCTC 22515 / FYK2301M01Imported.

    Entry informationi

    Entry nameiI0IDA2_PHYMF
    AccessioniPrimary (citable) accession number: I0IDA2
    Entry historyi
    Integrated into UniProtKB/TrEMBL: June 13, 2012
    Last sequence update: June 13, 2012
    Last modified: October 1, 2014
    This is version 11 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3