I0ICX5 (I0ICX5_PHYMF) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Alanine racemase EMBL BAM03113.1
EC=5.1.1.1 EMBL BAM03113.1

Gene names

Name:	alr EMBL BAM03113.1
Ordered Locus Names:	PSMK_09540 EMBL BAM03113.1

Organism

Phycisphaera mikurensis (strain NBRC 102666 / KCTC 22515 / FYK2301M01) [Complete proteome] [HAMAP] EMBL BAM03113.1

Taxonomic identifier

1142394 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Planctomycetes › Phycisphaerae › Phycisphaerales › Phycisphaeraceae › Phycisphaera › Phycisphaera mikurensis

Protein attributes

Sequence length	391 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Cofactor	Pyridoxal phosphate By similarity. SAAS SAAS011079
Sequence similarities	Belongs to the alanine racemase family. RuleBase RU004188

Ontologies

Keywords
Ligand	Pyridoxal phosphate SAAS SAAS011079
Molecular function	Isomerase SAAS SAAS011079 EMBL BAM03113.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	alanine metabolic process Inferred from electronic annotation. Source: InterPro
Molecular_function	alanine racemase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	I0ICX5 [UniParc]. Last modified June 13, 2012. Version 1. Checksum: 894F03151D73BD77	FASTA	391	40,577
	10 20 30 40 50 60 MAAPPTSNSW LEVDLAAVEA NARVLAAAAP AASLCGVVKK DAYGLGGPAV GRALEAAGAG 70 80 90 100 110 120 MLAVYEPREA LAIAEAGVGL PFLVLHGTLA AGDPWAALAE AGRLEFQAGD GELLDALDAE 130 140 150 160 170 180 GRRRGIRLPV HVHADTGMSR EGMPGPAAVD AVRGIPARAG LRLAGVMTHL ATADSDARRA 190 200 210 220 230 240 AGQVAAFDRL LAQMELPEHA VVHLCNSYAA MREPAWHRRM IRPGIGLYGY AEPTLDRGER 250 260 270 280 290 300 WETDARLRPV ARWVSRIARV LDASAGAPVG YGATESLEKD TRLGLVPVGY ADGYPLALSG 310 320 330 340 350 360 RGVVRVGGAE CRVVGRVSMD QVMVDLSAAP GAGPGAEVEV YGNDPAAPNA LPRMAAAAGS 370 380 390 HAYELLTRIH PRVERRHAVA RPGFGDPPDA G

References

[1]

"Complete genome sequence of Phycisphaera mikurensis NBRC 102666." Ankai A., Hosoyama A., Terui Y., Sekine M., Fukai R., Kato Y., Nakamura S., Yamada-Narita S., Kawakoshi A., Fukunaga Y., Yamazaki S., Fujita N. Submitted (FEB-2012) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: NBRC 102666 / KCTC 22515 / FYK2301M01.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AP012338 Genomic DNA. Translation: BAM03113.1.
RefSeq	YP_005445010.1. NC_017080.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	BAM03113; BAM03113; PSMK_09540.
GeneID	12037444.
KEGG	phm:PSMK_09540.
Organism-specific databases
CMR	Search...
Phylogenomic databases
KO	K01775.
Family and domain databases
Gene3D	2.40.37.10. 1 hit.
HAMAP	MF_01201. Ala_racemase.
InterPro	IPR000821. Ala_racemase. IPR009006. Ala_racemase/Decarboxylase_C. IPR011079. Ala_racemase_C. IPR001608. Ala_racemase_N. [Graphical view]
Pfam	PF00842. Ala_racemase_C. 1 hit. PF01168. Ala_racemase_N. 1 hit. [Graphical view]
PRINTS	PR00992. ALARACEMASE.
SMART	SM01005. Ala_racemase_C. 1 hit. [Graphical view]
SUPFAM	SSF50621. Racem_decarbox_C. 1 hit.
TIGRFAMs	TIGR00492. alr. 1 hit.
ProtoNet	Search...

Entry information

Entry name

I0ICX5_PHYMF

Accession

Primary (citable) accession number: I0ICX5

Entry history

Integrated into UniProtKB/TrEMBL:	June 13, 2012
Last sequence update:	June 13, 2012
Last modified:	April 3, 2013
This is version 8 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)