I0HUB6 (I0HUB6_RUBGI) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
ATP dependent DNA ligase DnaL EMBL BAL96603.1
EC=6.5.1.1 EMBL BAL96603.1

Gene names

Name:	dnaL EMBL BAL96603.1
Ordered Locus Names:	RGE_32640 EMBL BAL96603.1

Organism

Rubrivivax gelatinosus (strain NBRC 100245 / IL144) [Complete proteome] [HAMAP] EMBL BAL96603.1

Taxonomic identifier

983917 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › unclassified Burkholderiales › Burkholderiales Genera incertae sedis › Rubrivivax › Rubrivivax gelatinosus

Protein attributes

Sequence length	280 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL BAL96603.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA recombination Inferred from electronic annotation. Source: InterPro DNA repair Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	I0HUB6 [UniParc]. Last modified June 13, 2012. Version 1. Checksum: 03BCD1C8CA8035DE	FASTA	280	30,131
	10 20 30 40 50 60 MLLTRRDFWA AALACCSLPG RPAEAGSPPA VMLAREARLG VDPAGFLVSE KLDGVRALWD 70 80 90 100 110 120 GRRLRFRSGR DVVAPPGFVA RLPPVALDGE LWLGRGAFEA VSGLVRRESP DDGRWRALRY 130 140 150 160 170 180 CVFDLPGAPG PFAERARRLA DLARGTNAFV AVEQRRVASA GALNVWLDEV VTGGGEGLVL 190 200 210 220 230 240 HRADALWQPG RSDALLKLKP QQDAEAVVVG HVGGQGRLEG RMGALRVRAD DGTEFLLGTG 250 260 270 280 FSDAERAAPP PVGTVVSYRY RGRTAAGVPR FASFLRVREF

References

[1]

"Complete genome sequence of phototrophic betaproteobacterium Rubrivivax gelatinosus IL144." Nagashima S., Sekine M., Takami A., Shimizu T., Nakamura S., Aono E., Sakamoto K., Nakazawa H., Yamazaki S., Fujita N., Shimada K., Hanada S., Nagashima K. Submitted (FEB-2012) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: NBRC 100245 / IL144.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AP012320 Genomic DNA. Translation: BAL96603.1.
RefSeq	YP_005438102.1. NC_017075.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	BAL96603; BAL96603; RGE_32640.
GeneID	12027389.
KEGG	rge:RGE_32640.
Organism-specific databases
CMR	Search...
Phylogenomic databases
KO	K01971.
Enzyme and pathway databases
BioCyc	RGEL983917:GLJR-3299-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012310. DNA_ligase_ATP-dep_cent. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF01068. DNA_ligase_A_M. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
PROSITE	PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

I0HUB6_RUBGI

Accession

Primary (citable) accession number: I0HUB6

Entry history

Integrated into UniProtKB/TrEMBL:	June 13, 2012
Last sequence update:	June 13, 2012
Last modified:	May 29, 2013
This is version 8 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)