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I0HUB6 (I0HUB6_RUBGI) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 12. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length280 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL BAL96603.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: UniProtKB-EC

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
I0HUB6 [UniParc].

Last modified June 13, 2012. Version 1.
Checksum: 03BCD1C8CA8035DE

FASTA28030,131
        10         20         30         40         50         60 
MLLTRRDFWA AALACCSLPG RPAEAGSPPA VMLAREARLG VDPAGFLVSE KLDGVRALWD 

        70         80         90        100        110        120 
GRRLRFRSGR DVVAPPGFVA RLPPVALDGE LWLGRGAFEA VSGLVRRESP DDGRWRALRY 

       130        140        150        160        170        180 
CVFDLPGAPG PFAERARRLA DLARGTNAFV AVEQRRVASA GALNVWLDEV VTGGGEGLVL 

       190        200        210        220        230        240 
HRADALWQPG RSDALLKLKP QQDAEAVVVG HVGGQGRLEG RMGALRVRAD DGTEFLLGTG 

       250        260        270        280 
FSDAERAAPP PVGTVVSYRY RGRTAAGVPR FASFLRVREF 

« Hide

References

[1]"Complete genome sequence of phototrophic betaproteobacterium Rubrivivax gelatinosus IL144."
Nagashima S., Sekine M., Takami A., Shimizu T., Nakamura S., Aono E., Sakamoto K., Nakazawa H., Yamazaki S., Fujita N., Shimada K., Hanada S., Nagashima K.
Submitted (FEB-2012) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NBRC 100245 / IL144.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AP012320 Genomic DNA. Translation: BAL96603.1.
RefSeqYP_005438102.1. NC_017075.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAL96603; BAL96603; RGE_32640.
GeneID12027389.
KEGGrge:RGE_32640.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01971.

Enzyme and pathway databases

BioCycRGEL983917:GLJR-3299-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameI0HUB6_RUBGI
AccessionPrimary (citable) accession number: I0HUB6
Entry history
Integrated into UniProtKB/TrEMBL: June 13, 2012
Last sequence update: June 13, 2012
Last modified: June 11, 2014
This is version 12 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)