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I0HUB6

- I0HUB6_RUBGI

UniProt

I0HUB6 - I0HUB6_RUBGI

Protein
Submitted name:

ATP dependent DNA ligase DnaL

Gene

dnaL

Organism
Rubrivivax gelatinosus (strain NBRC 100245 / IL144)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 14 (01 Oct 2014)
      Sequence version 1 (13 Jun 2012)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: UniProtKB-EC

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciRGEL983917:GLJR-3299-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP dependent DNA ligase DnaLImported (EC:6.5.1.1Imported)
    Gene namesi
    Name:dnaLImported
    Ordered Locus Names:RGE_32640Imported
    OrganismiRubrivivax gelatinosus (strain NBRC 100245 / IL144)Imported
    Taxonomic identifieri983917 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesRubrivivax
    ProteomesiUP000007883: Chromosome

    Family & Domainsi

    Phylogenomic databases

    KOiK01971.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012310. DNA_ligase_ATP-dep_cent.
    IPR029319. DNA_ligase_OB.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF01068. DNA_ligase_A_M. 1 hit.
    PF14743. DNA_ligase_OB_2. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    I0HUB6-1 [UniParc]FASTAAdd to Basket

    « Hide

    MLLTRRDFWA AALACCSLPG RPAEAGSPPA VMLAREARLG VDPAGFLVSE    50
    KLDGVRALWD GRRLRFRSGR DVVAPPGFVA RLPPVALDGE LWLGRGAFEA 100
    VSGLVRRESP DDGRWRALRY CVFDLPGAPG PFAERARRLA DLARGTNAFV 150
    AVEQRRVASA GALNVWLDEV VTGGGEGLVL HRADALWQPG RSDALLKLKP 200
    QQDAEAVVVG HVGGQGRLEG RMGALRVRAD DGTEFLLGTG FSDAERAAPP 250
    PVGTVVSYRY RGRTAAGVPR FASFLRVREF 280
    Length:280
    Mass (Da):30,131
    Last modified:June 13, 2012 - v1
    Checksum:i03BCD1C8CA8035DE
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP012320 Genomic DNA. Translation: BAL96603.1.
    RefSeqiWP_014429464.1. NC_017075.1.
    YP_005438102.1. NC_017075.1.

    Genome annotation databases

    EnsemblBacteriaiBAL96603; BAL96603; RGE_32640.
    GeneIDi12027389.
    KEGGirge:RGE_32640.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP012320 Genomic DNA. Translation: BAL96603.1 .
    RefSeqi WP_014429464.1. NC_017075.1.
    YP_005438102.1. NC_017075.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai BAL96603 ; BAL96603 ; RGE_32640 .
    GeneIDi 12027389.
    KEGGi rge:RGE_32640.

    Phylogenomic databases

    KOi K01971.

    Enzyme and pathway databases

    BioCyci RGEL983917:GLJR-3299-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012310. DNA_ligase_ATP-dep_cent.
    IPR029319. DNA_ligase_OB.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF01068. DNA_ligase_A_M. 1 hit.
    PF14743. DNA_ligase_OB_2. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete genome sequence of phototrophic betaproteobacterium Rubrivivax gelatinosus IL144."
      Nagashima S., Sekine M., Takami A., Shimizu T., Nakamura S., Aono E., Sakamoto K., Nakazawa H., Yamazaki S., Fujita N., Shimada K., Hanada S., Nagashima K.
      Submitted (FEB-2012) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: NBRC 100245 / IL144Imported.

    Entry informationi

    Entry nameiI0HUB6_RUBGI
    AccessioniPrimary (citable) accession number: I0HUB6
    Entry historyi
    Integrated into UniProtKB/TrEMBL: June 13, 2012
    Last sequence update: June 13, 2012
    Last modified: October 1, 2014
    This is version 14 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3