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I0HUB6

- I0HUB6_RUBGI

UniProt

I0HUB6 - I0HUB6_RUBGI

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Protein
Submitted name:

ATP dependent DNA ligase DnaL

Gene

dnaL

Organism
Rubrivivax gelatinosus (strain NBRC 100245 / IL144)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciRGEL983917:GLJR-3299-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligase DnaLImported (EC:6.5.1.1Imported)
Gene namesi
Name:dnaLImported
Ordered Locus Names:RGE_32640Imported
OrganismiRubrivivax gelatinosus (strain NBRC 100245 / IL144)Imported
Taxonomic identifieri983917 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesRubrivivax
ProteomesiUP000007883: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

I0HUB6-1 [UniParc]FASTAAdd to Basket

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        10         20         30         40         50
MLLTRRDFWA AALACCSLPG RPAEAGSPPA VMLAREARLG VDPAGFLVSE
60 70 80 90 100
KLDGVRALWD GRRLRFRSGR DVVAPPGFVA RLPPVALDGE LWLGRGAFEA
110 120 130 140 150
VSGLVRRESP DDGRWRALRY CVFDLPGAPG PFAERARRLA DLARGTNAFV
160 170 180 190 200
AVEQRRVASA GALNVWLDEV VTGGGEGLVL HRADALWQPG RSDALLKLKP
210 220 230 240 250
QQDAEAVVVG HVGGQGRLEG RMGALRVRAD DGTEFLLGTG FSDAERAAPP
260 270 280
PVGTVVSYRY RGRTAAGVPR FASFLRVREF
Length:280
Mass (Da):30,131
Last modified:June 13, 2012 - v1
Checksum:i03BCD1C8CA8035DE
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AP012320 Genomic DNA. Translation: BAL96603.1.
RefSeqiWP_014429464.1. NC_017075.1.
YP_005438102.1. NC_017075.1.

Genome annotation databases

EnsemblBacteriaiBAL96603; BAL96603; RGE_32640.
GeneIDi12027389.
KEGGirge:RGE_32640.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AP012320 Genomic DNA. Translation: BAL96603.1 .
RefSeqi WP_014429464.1. NC_017075.1.
YP_005438102.1. NC_017075.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai BAL96603 ; BAL96603 ; RGE_32640 .
GeneIDi 12027389.
KEGGi rge:RGE_32640.

Phylogenomic databases

KOi K01971.

Enzyme and pathway databases

BioCyci RGEL983917:GLJR-3299-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete genome sequence of phototrophic betaproteobacterium Rubrivivax gelatinosus IL144."
    Nagashima S., Sekine M., Takami A., Shimizu T., Nakamura S., Aono E., Sakamoto K., Nakazawa H., Yamazaki S., Fujita N., Shimada K., Hanada S., Nagashima K.
    Submitted (FEB-2012) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NBRC 100245 / IL144Imported.

Entry informationi

Entry nameiI0HUB6_RUBGI
AccessioniPrimary (citable) accession number: I0HUB6
Entry historyi
Integrated into UniProtKB/TrEMBL: June 13, 2012
Last sequence update: June 13, 2012
Last modified: October 1, 2014
This is version 14 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3