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I0HSJ5

- I0HSJ5_RUBGI

UniProt

I0HSJ5 - I0HSJ5_RUBGI

Protein
Submitted name:

ATP-dependent DNA ligase LigD

Gene

ligD

Organism
Rubrivivax gelatinosus (strain NBRC 100245 / IL144)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 12 (01 Oct 2014)
      Sequence version 1 (13 Jun 2012)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: UniProtKB-EC
    3. DNA primase activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciRGEL983917:GLJR-2668-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP-dependent DNA ligase LigDImported (EC:6.5.1.1Imported)
    Gene namesi
    Name:ligDImported
    Ordered Locus Names:RGE_26430Imported
    OrganismiRubrivivax gelatinosus (strain NBRC 100245 / IL144)Imported
    Taxonomic identifieri983917 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesRubrivivax
    ProteomesiUP000007883: Chromosome

    Family & Domainsi

    Phylogenomic databases

    KOiK01971.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    I0HSJ5-1 [UniParc]FASTAAdd to Basket

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    MPRTAAPARD PLQHYRERRD FRATPEPGAD AVQPGADTGR FVIQKHDATR    50
    LHYDFRLELD GVLLSWAVPK GPSLDPADRR MAVRTEDHPL AYADFEGRIP 100
    AGHYGAGQVI VWDRGSWTPL AEPRAALAAG KLPFELDGEK LHGAWELVRM 150
    KPKPGERGEN WLLFKKRDAQ ARPRAEFDVV AEQPDSVAAT AADKPRRRQS 200
    RAALALDSVA PKAPQPETLA PQLATLASAA PSSGSWLYET KFDGYRLLAR 250
    IRRGVPRLFT RNGHDWTDKL PALAAALKGL GLQSAWIDGE LVALGSRGAA 300
    DFNALQNAFD GRDTARLLYY VFDLPYVQGR DLRELALDTR RALLQSLLDE 350
    HPLDGVRFSE ELPAGGAGPL ATACERQLEG VIAKRRDAPY RSLRSEAWLK 400
    LKCRRRQEFV VAGYTERTNA SGEIGSLILA VHDADGRLVH AGKVGTGWDT 450
    RAARDLFTRL QPLAREAVPF AAGTPSPGRW SRRAPGLERW VRPEFVVEVE 500
    FAEWTPGGSV RHAVFVGVRE DKPAAQVLRE RAVVPDTAPS AAPTASSSGR 550
    IARVRITHGE RIVDKASGLS KLDLLRWYDG VAERMLPHLK ARPVALLRAP 600
    QGVGRPVFFQ KHAERTEIPG LVLLDPALWP GHEPLMEIRS AEALLSAAQM 650
    NTIEFHTWNA TTRTIAKPDR LVFDLDPGEG VDFAAVREGA LLVRTLLDEL 700
    GLASWLKTSG GKGLHVVVPV APRVAVDVVK PFSRAVVAHL AEQVPERFVV 750
    RSGPANRVGR IFVDWLRNGE GATTVAAFSA RARPGLGVSI PVSWDALPEL 800
    RGGDQWTLAN AREHLSFERE DPWAAFWTTR QALAPAMRRL GFDPRAGGDG 850
    R 851
    Length:851
    Mass (Da):93,495
    Last modified:June 13, 2012 - v1
    Checksum:iA26F3B1F4D460DAA
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP012320 Genomic DNA. Translation: BAL95982.1.
    RefSeqiYP_005437481.1. NC_017075.1.

    Genome annotation databases

    EnsemblBacteriaiBAL95982; BAL95982; RGE_26430.
    GeneIDi12026758.
    KEGGirge:RGE_26430.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP012320 Genomic DNA. Translation: BAL95982.1 .
    RefSeqi YP_005437481.1. NC_017075.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai BAL95982 ; BAL95982 ; RGE_26430 .
    GeneIDi 12026758.
    KEGGi rge:RGE_26430.

    Phylogenomic databases

    KOi K01971.

    Enzyme and pathway databases

    BioCyci RGEL983917:GLJR-2668-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete genome sequence of phototrophic betaproteobacterium Rubrivivax gelatinosus IL144."
      Nagashima S., Sekine M., Takami A., Shimizu T., Nakamura S., Aono E., Sakamoto K., Nakazawa H., Yamazaki S., Fujita N., Shimada K., Hanada S., Nagashima K.
      Submitted (FEB-2012) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: NBRC 100245 / IL144Imported.

    Entry informationi

    Entry nameiI0HSJ5_RUBGI
    AccessioniPrimary (citable) accession number: I0HSJ5
    Entry historyi
    Integrated into UniProtKB/TrEMBL: June 13, 2012
    Last sequence update: June 13, 2012
    Last modified: October 1, 2014
    This is version 12 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3