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I0HSJ5 (I0HSJ5_RUBGI) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 11. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length851 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Sequences

Sequence LengthMass (Da)Tools
I0HSJ5 [UniParc].

Last modified June 13, 2012. Version 1.
Checksum: A26F3B1F4D460DAA

FASTA85193,495
        10         20         30         40         50         60 
MPRTAAPARD PLQHYRERRD FRATPEPGAD AVQPGADTGR FVIQKHDATR LHYDFRLELD 

        70         80         90        100        110        120 
GVLLSWAVPK GPSLDPADRR MAVRTEDHPL AYADFEGRIP AGHYGAGQVI VWDRGSWTPL 

       130        140        150        160        170        180 
AEPRAALAAG KLPFELDGEK LHGAWELVRM KPKPGERGEN WLLFKKRDAQ ARPRAEFDVV 

       190        200        210        220        230        240 
AEQPDSVAAT AADKPRRRQS RAALALDSVA PKAPQPETLA PQLATLASAA PSSGSWLYET 

       250        260        270        280        290        300 
KFDGYRLLAR IRRGVPRLFT RNGHDWTDKL PALAAALKGL GLQSAWIDGE LVALGSRGAA 

       310        320        330        340        350        360 
DFNALQNAFD GRDTARLLYY VFDLPYVQGR DLRELALDTR RALLQSLLDE HPLDGVRFSE 

       370        380        390        400        410        420 
ELPAGGAGPL ATACERQLEG VIAKRRDAPY RSLRSEAWLK LKCRRRQEFV VAGYTERTNA 

       430        440        450        460        470        480 
SGEIGSLILA VHDADGRLVH AGKVGTGWDT RAARDLFTRL QPLAREAVPF AAGTPSPGRW 

       490        500        510        520        530        540 
SRRAPGLERW VRPEFVVEVE FAEWTPGGSV RHAVFVGVRE DKPAAQVLRE RAVVPDTAPS 

       550        560        570        580        590        600 
AAPTASSSGR IARVRITHGE RIVDKASGLS KLDLLRWYDG VAERMLPHLK ARPVALLRAP 

       610        620        630        640        650        660 
QGVGRPVFFQ KHAERTEIPG LVLLDPALWP GHEPLMEIRS AEALLSAAQM NTIEFHTWNA 

       670        680        690        700        710        720 
TTRTIAKPDR LVFDLDPGEG VDFAAVREGA LLVRTLLDEL GLASWLKTSG GKGLHVVVPV 

       730        740        750        760        770        780 
APRVAVDVVK PFSRAVVAHL AEQVPERFVV RSGPANRVGR IFVDWLRNGE GATTVAAFSA 

       790        800        810        820        830        840 
RARPGLGVSI PVSWDALPEL RGGDQWTLAN AREHLSFERE DPWAAFWTTR QALAPAMRRL 

       850 
GFDPRAGGDG R 

« Hide

References

[1]"Complete genome sequence of phototrophic betaproteobacterium Rubrivivax gelatinosus IL144."
Nagashima S., Sekine M., Takami A., Shimizu T., Nakamura S., Aono E., Sakamoto K., Nakazawa H., Yamazaki S., Fujita N., Shimada K., Hanada S., Nagashima K.
Submitted (FEB-2012) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NBRC 100245 / IL144.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AP012320 Genomic DNA. Translation: BAL95982.1.
RefSeqYP_005437481.1. NC_017075.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAL95982; BAL95982; RGE_26430.
GeneID12026758.
KEGGrge:RGE_26430.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01971.

Enzyme and pathway databases

BioCycRGEL983917:GLJR-2668-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameI0HSJ5_RUBGI
AccessionPrimary (citable) accession number: I0HSJ5
Entry history
Integrated into UniProtKB/TrEMBL: June 13, 2012
Last sequence update: June 13, 2012
Last modified: April 16, 2014
This is version 11 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)