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I0HSJ5

- I0HSJ5_RUBGI

UniProt

I0HSJ5 - I0HSJ5_RUBGI

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Protein
Submitted name:

ATP-dependent DNA ligase LigD

Gene
ligD, RGE_26430
Organism
Rubrivivax gelatinosus (strain NBRC 100245 / IL144)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: UniProtKB-EC
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciRGEL983917:GLJR-2668-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligase LigDImported (EC:6.5.1.1Imported)
Gene namesi
Name:ligDImported
Ordered Locus Names:RGE_26430Imported
OrganismiRubrivivax gelatinosus (strain NBRC 100245 / IL144)Imported
Taxonomic identifieri983917 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesRubrivivax
ProteomesiUP000007883: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

I0HSJ5-1 [UniParc]FASTAAdd to Basket

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MPRTAAPARD PLQHYRERRD FRATPEPGAD AVQPGADTGR FVIQKHDATR    50
LHYDFRLELD GVLLSWAVPK GPSLDPADRR MAVRTEDHPL AYADFEGRIP 100
AGHYGAGQVI VWDRGSWTPL AEPRAALAAG KLPFELDGEK LHGAWELVRM 150
KPKPGERGEN WLLFKKRDAQ ARPRAEFDVV AEQPDSVAAT AADKPRRRQS 200
RAALALDSVA PKAPQPETLA PQLATLASAA PSSGSWLYET KFDGYRLLAR 250
IRRGVPRLFT RNGHDWTDKL PALAAALKGL GLQSAWIDGE LVALGSRGAA 300
DFNALQNAFD GRDTARLLYY VFDLPYVQGR DLRELALDTR RALLQSLLDE 350
HPLDGVRFSE ELPAGGAGPL ATACERQLEG VIAKRRDAPY RSLRSEAWLK 400
LKCRRRQEFV VAGYTERTNA SGEIGSLILA VHDADGRLVH AGKVGTGWDT 450
RAARDLFTRL QPLAREAVPF AAGTPSPGRW SRRAPGLERW VRPEFVVEVE 500
FAEWTPGGSV RHAVFVGVRE DKPAAQVLRE RAVVPDTAPS AAPTASSSGR 550
IARVRITHGE RIVDKASGLS KLDLLRWYDG VAERMLPHLK ARPVALLRAP 600
QGVGRPVFFQ KHAERTEIPG LVLLDPALWP GHEPLMEIRS AEALLSAAQM 650
NTIEFHTWNA TTRTIAKPDR LVFDLDPGEG VDFAAVREGA LLVRTLLDEL 700
GLASWLKTSG GKGLHVVVPV APRVAVDVVK PFSRAVVAHL AEQVPERFVV 750
RSGPANRVGR IFVDWLRNGE GATTVAAFSA RARPGLGVSI PVSWDALPEL 800
RGGDQWTLAN AREHLSFERE DPWAAFWTTR QALAPAMRRL GFDPRAGGDG 850
R 851
Length:851
Mass (Da):93,495
Last modified:June 13, 2012 - v1
Checksum:iA26F3B1F4D460DAA
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AP012320 Genomic DNA. Translation: BAL95982.1.
RefSeqiYP_005437481.1. NC_017075.1.

Genome annotation databases

EnsemblBacteriaiBAL95982; BAL95982; RGE_26430.
GeneIDi12026758.
KEGGirge:RGE_26430.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AP012320 Genomic DNA. Translation: BAL95982.1 .
RefSeqi YP_005437481.1. NC_017075.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai BAL95982 ; BAL95982 ; RGE_26430 .
GeneIDi 12026758.
KEGGi rge:RGE_26430.

Phylogenomic databases

KOi K01971.

Enzyme and pathway databases

BioCyci RGEL983917:GLJR-2668-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete genome sequence of phototrophic betaproteobacterium Rubrivivax gelatinosus IL144."
    Nagashima S., Sekine M., Takami A., Shimizu T., Nakamura S., Aono E., Sakamoto K., Nakazawa H., Yamazaki S., Fujita N., Shimada K., Hanada S., Nagashima K.
    Submitted (FEB-2012) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NBRC 100245 / IL144.

Entry informationi

Entry nameiI0HSJ5_RUBGI
AccessioniPrimary (citable) accession number: I0HSJ5
Entry historyi
Integrated into UniProtKB/TrEMBL: June 13, 2012
Last sequence update: June 13, 2012
Last modified: April 16, 2014
This is version 11 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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