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I0HRC1 (I0HRC1_RUBGI) Unreviewed, UniProtKB/TrEMBL

Last modified October 16, 2013. Version 9. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein attributes

Sequence length1121 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processcarbohydrate metabolic process

Inferred from electronic annotation. Source: InterPro

   Molecular_functioncatalytic activity

Inferred from electronic annotation. Source: InterPro

cation binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
I0HRC1 [UniParc].

Last modified June 13, 2012. Version 1.
Checksum: F1DF8FEB0BB1188E

FASTA1,121124,307
        10         20         30         40         50         60 
MKGEDLSAIT ATQTQPPADA AAPALDPLWF KDAVIYELHI KSFADSNGDG IGDLAGLISK 

        70         80         90        100        110        120 
LDYVRDLGVN TIWLLPFYPS PLRDDGYDVA DFMAVNPAYG TAADVARLVA EAHARGLRVI 

       130        140        150        160        170        180 
TELVVNHTSD QHPWFQRARR APRGSPERDF YVWSDDPTRY AGTRIIFTDT EKSNWTWDEV 

       190        200        210        220        230        240 
AGQYFWHRFF SHQPDLNFDN PAVREAVFGI MEFWLEQGVD GFRLDAIPYL VEREGTSNEN 

       250        260        270        280        290        300 
LRETHEVIKE IRRRLDAKYP GKLLLAEANM WPEDVREYFG EDDECHMAYH FPLMPRMYMA 

       310        320        330        340        350        360 
IAQEDRHPVV EILQQTPDIS PQCQWAIFLR NHDELTLEMV TSRERDYMYS MYAADPRARL 

       370        380        390        400        410        420 
NLGIRRRLAP LLENDAERIK LMNSLLLSMP GSPVLYYGDE IGMGDNIFLG DRDGVRTPMQ 

       430        440        450        460        470        480 
WTSDRNGGFS RADPQRLVLP AIQDPIYGFE AVNVEAQSRD ASSLLNWTRR MLAIRRSTQV 

       490        500        510        520        530        540 
FGRGRIRMLH PGNRKVLAYL RELGDEVVLC VANLGRAPQP VELDLSRYKG RVPVEMGAHT 

       550        560        570        580        590        600 
AFPPIGELPY LLTLAGHGFF WFRLATDAAP PDWHADRRPV EHLPVLVMFD GWNSFFRDRV 

       610        620        630        640        650        660 
VPWRIAMAGK TLAQLEDELL PPHLARQRWF DAGEPPAQAR IGTHATLAQD GREWLLALVD 

       670        680        690        700        710        720 
TRGGPHEDAR WFSPLAVAWE DDEADQGRLG QLGPAALAKA RMQARIGLLG DAGGDEAFCR 

       730        740        750        760        770        780 
ALVAAVAAGR SLPAAGGGQI RFVALRGFDA GIAAELDTLA VRAVPQGRNT TLQLGDRLFV 

       790        800        810        820        830        840 
KLLRRLRPGV NVEVEMGRHL REVAHFEHAV VPVGHVEHVA ADGTVSTLAV LQPWVVHQGN 

       850        860        870        880        890        900 
AWDFALMQLT RHLERAAPAP AESVGAAEGG LMARVRALAE RLAALHEALA LRRGDAAFDP 

       910        920        930        940        950        960 
EPLQPEDLRR AAAATAQLAH TTLALLAEAT PRLPAAQQPL ARRLAAGERT LRDRLAACAA 

       970        980        990       1000       1010       1020 
HGAGGPKLRI HGALRLQEVL LVHEDFVLAD FEGDPSLPPA ERRARQSPLR DVAGLLHSLD 

      1030       1040       1050       1060       1070       1080 
LVRAAALQRG AHTEAENRRR EALADAWAGE LRRAFVDSYA ERALALGLVA GADAFEGPAS 

      1090       1100       1110       1120 
TLALFEIDAA LRELHDELRR RPAGATAPLA ALATLAQRLG P 

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References

[1]"Complete genome sequence of phototrophic betaproteobacterium Rubrivivax gelatinosus IL144."
Nagashima S., Sekine M., Takami A., Shimizu T., Nakamura S., Aono E., Sakamoto K., Nakazawa H., Yamazaki S., Fujita N., Shimada K., Hanada S., Nagashima K.
Submitted (FEB-2012) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NBRC 100245 / IL144.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AP012320 Genomic DNA. Translation: BAL95558.1.
RefSeqYP_005437057.1. NC_017075.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAL95558; BAL95558; RGE_22170.
GeneID12026330.
KEGGrge:RGE_22170.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK05343.

Enzyme and pathway databases

BioCycRGEL983917:GLJR-2240-MONOMER.

Family and domain databases

Gene3D2.60.40.1180. 1 hit.
3.20.20.80. 3 hits.
InterProIPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR012810. TreS/a-amylase_N.
[Graphical view]
PANTHERPTHR10357. PTHR10357. 1 hit.
PfamPF00128. Alpha-amylase. 1 hit.
[Graphical view]
SMARTSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMSSF51445. SSF51445. 1 hit.
TIGRFAMsTIGR02456. treS_nterm. 1 hit.
ProtoNetSearch...

Entry information

Entry nameI0HRC1_RUBGI
AccessionPrimary (citable) accession number: I0HRC1
Entry history
Integrated into UniProtKB/TrEMBL: June 13, 2012
Last sequence update: June 13, 2012
Last modified: October 16, 2013
This is version 9 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)