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I0HKY5 (I0HKY5_RUBGI) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 11. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length396 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis By similarity. RuleBase RU000325 HAMAP-Rule MF_00118

Subunit structure

Monomer By similarity. HAMAP-Rule MF_00118

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00118.

Sequence similarities

Belongs to the GTP-binding elongation factor family. EF-Tu/EF-1A subfamily. RuleBase RU000325 HAMAP-Rule MF_00118

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Nucleotide binding19 – 268GTP By similarity HAMAP-Rule MF_00118
Nucleotide binding81 – 855GTP By similarity HAMAP-Rule MF_00118
Nucleotide binding136 – 1394GTP By similarity HAMAP-Rule MF_00118

Sequences

Sequence LengthMass (Da)Tools
I0HKY5 [UniParc].

Last modified June 13, 2012. Version 1.
Checksum: E84D8F2E8971E68D

FASTA39643,076
        10         20         30         40         50         60 
MAKGKFERTK PHVNVGTIGH VDHGKTTLTA AITTILAAKF GGEAKAYDQI DAAPEEKARG 

        70         80         90        100        110        120 
ITINTAHVEY ETASRHYAHV DCPGHADYVK NMITGAAQMD GAILVCSAAD GPMPQTREHI 

       130        140        150        160        170        180 
LLARQVGVPY IIVFLNKCDM VDDAELLELV EMEVRELLSK YDFPGDDTPI IKGSAKLAIE 

       190        200        210        220        230        240 
GDKGDLGEQA IFRLADALDS YIPTPERAVD GTFLMPVEDV FSISGRGTVV TGRVERGVIK 

       250        260        270        280        290        300 
VGEEIEIVGI RPTVKTTCTG VEMFRKLLDQ GQAGDNVGIL LRGTKREEVE RGQVLCKPGS 

       310        320        330        340        350        360 
VKPHTHFTAE IYVLSKEEGG RHTPFFNNYR PQFYFRTTDV TGAVELPKDK EMVMPGDNVS 

       370        380        390 
ITVKLIAPIA MEEGLRFAIR EGGRTVGAGV VAKIIE 

« Hide

References

« Hide 'large scale' references
[1]"Complete Genome Sequence of Phototrophic Betaproteobacterium Rubrivivax gelatinosus IL144."
Nagashima S., Kamimura A., Shimizu T., Nakamura-isaki S., Aono E., Sakamoto K., Ichikawa N., Nakazawa H., Sekine M., Yamazaki S., Fujita N., Shimada K., Hanada S., Nagashima K.V.P.
J. Bacteriol. 194:3541-3542(2012) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: IL144 EMBL BAL93672.1.
[2]"Complete genome sequence of phototrophic betaproteobacterium Rubrivivax gelatinosus IL144."
Nagashima S., Sekine M., Takami A., Shimizu T., Nakamura S., Aono E., Sakamoto K., Nakazawa H., Yamazaki S., Fujita N., Shimada K., Hanada S., Nagashima K.
Submitted (FEB-2012) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NBRC 100245 / IL144.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AP012320 Genomic DNA. Translation: BAL93658.1.
AP012320 Genomic DNA. Translation: BAL93672.1.
RefSeqYP_005435157.1. NC_017075.1.
YP_005435171.1. NC_017075.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAL93658; BAL93658; RGE_03130.
BAL93672; BAL93672; RGE_03270.
GeneID12028295.
12028310.
KEGGrge:RGE_03130.
rge:RGE_03270.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK02358.

Enzyme and pathway databases

BioCycRGEL983917:GLJR-317-MONOMER.
RGEL983917:GLJR-332-MONOMER.

Family and domain databases

Gene3D3.40.50.300. 1 hit.
HAMAPMF_00118_B. EF_Tu_B.
InterProIPR000795. EF_GTP-bd_dom.
IPR027417. P-loop_NTPase.
IPR005225. Small_GTP-bd_dom.
IPR009000. Transl_B-barrel.
IPR009001. Transl_elong_EF1A/Init_IF2_C.
IPR004161. Transl_elong_EFTu/EF1A_2.
IPR004541. Transl_elong_EFTu/EF1A_bac/org.
IPR004160. Transl_elong_EFTu/EF1A_C.
[Graphical view]
PfamPF00009. GTP_EFTU. 1 hit.
PF03144. GTP_EFTU_D2. 1 hit.
PF03143. GTP_EFTU_D3. 1 hit.
[Graphical view]
PRINTSPR00315. ELONGATNFCT.
SUPFAMSSF50447. SSF50447. 1 hit.
SSF50465. SSF50465. 1 hit.
SSF52540. SSF52540. 1 hit.
TIGRFAMsTIGR00485. EF-Tu. 1 hit.
TIGR00231. small_GTP. 1 hit.
PROSITEPS00301. EFACTOR_GTP. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameI0HKY5_RUBGI
AccessionPrimary (citable) accession number: I0HKY5
Entry history
Integrated into UniProtKB/TrEMBL: June 13, 2012
Last sequence update: June 13, 2012
Last modified: April 16, 2014
This is version 11 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)