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I0HKR7 (I0HKR7_RUBGI) Unreviewed, UniProtKB/TrEMBL

Last modified October 16, 2013. Version 9. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length562 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionGlycosidase EMBL BAL93604.1
Hydrolase
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processcarbohydrate metabolic process

Inferred from electronic annotation. Source: InterPro

   Molecular_functionalpha-amylase activity

Inferred from electronic annotation. Source: UniProtKB-EC

cation binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
I0HKR7 [UniParc].

Last modified June 13, 2012. Version 1.
Checksum: E4EDDDCF0393F687

FASTA56261,987
        10         20         30         40         50         60 
MMFRRTVAAL AAALALGSAA AADEPVARPG RFADNPIVYF VVTDRFANGN PANDGSYGRK 

        70         80         90        100        110        120 
REAKPQDDIG SFHGGDLAGL TAKLREGWFR ELGVNAIWIT APYEQIHGWV VGGSKEFKHY 

       130        140        150        160        170        180 
GYHGYFALDY TKLDANMGTP AELRELVATA HAQGIRILFD VVMNHPGYGD IQSLSEYVTE 

       190        200        210        220        230        240 
PETDKKRGML WKGYEAATLR DYHSWIDYND PAWLQWWGPD WIRSGLRGYT EGGSDDLTKQ 

       250        260        270        280        290        300 
LAFLPDFKTE SDKPVGLPPF LKKKADTEAV ELPNTTVRGY LVAWLSRWVR DYGIDGFRAD 

       310        320        330        340        350        360 
TVKHVEYPSW TALKDASTKA LAEWKAANPK AAIDDAPFWM TGENWGQGIE RTRHYDIGFD 

       370        380        390        400        410        420 
NMINFDFQRR AEAKGAELDK VYAEYARTLA APATHNVLSY ISSHDTKLFD RKAILDGATA 

       430        440        450        460        470        480 
LMLAPGGVQI YYGDESARPD GPAAYGDPQQ STRSDMNWAS LDSAALAHWR KLGQFRARHV 

       490        500        510        520        530        540 
AVARGKHWQI AAQPYTFARV LPEDRIVAAV GARGTVTISV ADVFADGTRV HDAYGGGSAT 

       550        560 
VAGGKVTLDA DPRGVVLLEA LK 

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References

[1]"Complete genome sequence of phototrophic betaproteobacterium Rubrivivax gelatinosus IL144."
Nagashima S., Sekine M., Takami A., Shimizu T., Nakamura S., Aono E., Sakamoto K., Nakazawa H., Yamazaki S., Fujita N., Shimada K., Hanada S., Nagashima K.
Submitted (FEB-2012) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NBRC 100245 / IL144.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AP012320 Genomic DNA. Translation: BAL93604.1.
RefSeqYP_005435103.1. NC_017075.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAL93604; BAL93604; RGE_02590.
GeneID12028238.
KEGGrge:RGE_02590.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01176.

Enzyme and pathway databases

BioCycRGEL983917:GLJR-260-MONOMER.

Family and domain databases

Gene3D2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProIPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERPTHR10357. PTHR10357. 1 hit.
PfamPF00128. Alpha-amylase. 1 hit.
[Graphical view]
SMARTSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMSSF51445. SSF51445. 1 hit.
ProtoNetSearch...

Entry information

Entry nameI0HKR7_RUBGI
AccessionPrimary (citable) accession number: I0HKR7
Entry history
Integrated into UniProtKB/TrEMBL: June 13, 2012
Last sequence update: June 13, 2012
Last modified: October 16, 2013
This is version 9 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)