Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

Alpha-amylase MalS

Gene

malS

Organism
Rubrivivax gelatinosus (strain NBRC 100245 / IL144)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. alpha-amylase activity Source: UniProtKB-EC
  2. cation binding Source: InterPro

GO - Biological processi

  1. carbohydrate metabolic process Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

GlycosidaseImported, Hydrolase

Enzyme and pathway databases

BioCyciRGEL983917:GLJR-260-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Alpha-amylase MalSImported (EC:3.2.1.1Imported)
Gene namesi
Name:malSImported
Ordered Locus Names:RGE_02590Imported
OrganismiRubrivivax gelatinosus (strain NBRC 100245 / IL144)Imported
Taxonomic identifieri983917 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesRubrivivax
ProteomesiUP000007883: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK01176.

Family and domain databases

Gene3Di2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProiIPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
[Graphical view]
SMARTiSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 1 hit.

Sequencei

Sequence statusi: Complete.

I0HKR7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MMFRRTVAAL AAALALGSAA AADEPVARPG RFADNPIVYF VVTDRFANGN
60 70 80 90 100
PANDGSYGRK REAKPQDDIG SFHGGDLAGL TAKLREGWFR ELGVNAIWIT
110 120 130 140 150
APYEQIHGWV VGGSKEFKHY GYHGYFALDY TKLDANMGTP AELRELVATA
160 170 180 190 200
HAQGIRILFD VVMNHPGYGD IQSLSEYVTE PETDKKRGML WKGYEAATLR
210 220 230 240 250
DYHSWIDYND PAWLQWWGPD WIRSGLRGYT EGGSDDLTKQ LAFLPDFKTE
260 270 280 290 300
SDKPVGLPPF LKKKADTEAV ELPNTTVRGY LVAWLSRWVR DYGIDGFRAD
310 320 330 340 350
TVKHVEYPSW TALKDASTKA LAEWKAANPK AAIDDAPFWM TGENWGQGIE
360 370 380 390 400
RTRHYDIGFD NMINFDFQRR AEAKGAELDK VYAEYARTLA APATHNVLSY
410 420 430 440 450
ISSHDTKLFD RKAILDGATA LMLAPGGVQI YYGDESARPD GPAAYGDPQQ
460 470 480 490 500
STRSDMNWAS LDSAALAHWR KLGQFRARHV AVARGKHWQI AAQPYTFARV
510 520 530 540 550
LPEDRIVAAV GARGTVTISV ADVFADGTRV HDAYGGGSAT VAGGKVTLDA
560
DPRGVVLLEA LK
Length:562
Mass (Da):61,987
Last modified:June 13, 2012 - v1
Checksum:iE4EDDDCF0393F687
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP012320 Genomic DNA. Translation: BAL93604.1.
RefSeqiWP_014426493.1. NC_017075.1.
YP_005435103.1. NC_017075.1.

Genome annotation databases

EnsemblBacteriaiBAL93604; BAL93604; RGE_02590.
GeneIDi12028238.
KEGGirge:RGE_02590.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP012320 Genomic DNA. Translation: BAL93604.1.
RefSeqiWP_014426493.1. NC_017075.1.
YP_005435103.1. NC_017075.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAL93604; BAL93604; RGE_02590.
GeneIDi12028238.
KEGGirge:RGE_02590.

Phylogenomic databases

KOiK01176.

Enzyme and pathway databases

BioCyciRGEL983917:GLJR-260-MONOMER.

Family and domain databases

Gene3Di2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProiIPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
[Graphical view]
SMARTiSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Complete genome sequence of phototrophic betaproteobacterium Rubrivivax gelatinosus IL144."
    Nagashima S., Sekine M., Takami A., Shimizu T., Nakamura S., Aono E., Sakamoto K., Nakazawa H., Yamazaki S., Fujita N., Shimada K., Hanada S., Nagashima K.
    Submitted (FEB-2012) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NBRC 100245 / IL144Imported.

Entry informationi

Entry nameiI0HKR7_RUBGI
AccessioniPrimary (citable) accession number: I0HKR7
Entry historyi
Integrated into UniProtKB/TrEMBL: June 13, 2012
Last sequence update: June 13, 2012
Last modified: March 4, 2015
This is version 14 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.