I0G1W9 (I0G1W9_9BRAD) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
ATP-dependent DNA ligase EMBL BAL74756.1

Gene names

ORF Names:

S23_15390 EMBL BAL74756.1

Organism

Bradyrhizobium sp. S23321 EMBL BAL74756.1

Taxonomic identifier

335659 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Bradyrhizobiaceae › Bradyrhizobium

Protein attributes

Sequence length	889 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL BAL74756.1
Gene Ontology (GO)
Biological_process	DNA recombination Inferred from electronic annotation. Source: InterPro DNA repair Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	I0G1W9 [UniParc]. Last modified June 13, 2012. Version 1. Checksum: 02B1B4E918A21983	FASTA	889	97,921
	10 20 30 40 50 60 MLRKLSTYRQ KRDFEQTPEP SGRTAVTRSK QRRFVIQKHD ATRLHYDLRL EFDGVFKSWA 70 80 90 100 110 120 VTKGPSLDPH DKRLAVEVED HPLDYGDFEG TIPEGQYGGG TVMLWDRGTW DCEDPEAGFK 130 140 150 160 170 180 KGDLKFTLHG DKLHGSWVLV RMRNDRTGGK RTNWLLIKHR DEFASESEDI LSEDKSVASG 190 200 210 220 230 240 RAMAEIAKGK GRAPKPFMLA KGATTKADAV WQSNRAEETK GRTVKAAPRA ALKTSKAAKK 250 260 270 280 290 300 KAMTASTAKE VSEMPDFVAP QLCTLVERPP SGDGWCHEIK FDGYRVQLRI EDGKATLRTR 310 320 330 340 350 360 KGLDWTDKFA AIAKEAATLP DAMIDGEIVA LDHHGAPNFS SLQAALSDGK TNELIFFAFD 370 380 390 400 410 420 LLFAEGLDCR RLPLSERKTR LKKLVEAPKK KVSQIRFVEH FESGGDAVLQ SACKLELEGI 430 440 450 460 470 480 VSKKLDAPYR SGRTESWTKA KCRAGHEVVI GGWKTTAGKF RSLMAGVHRG DHLAFVGMVG 490 500 510 520 530 540 TGFGADKVKR IMPFLKEAAA SKSPFGGKNA PKKTRDVHWL KPELVAEIEF AGFTADGNIR 550 560 570 580 590 600 QAAFKGLRQD KPAEEVEAEA PADIALAKPS AKRRVPAKAA KPSKPSGSAE VMGVVISKPD 610 620 630 640 650 660 KELWPDAGDG EGVSKLDLAR YFEAVGAWMI EHLKGRPCSI LRAPDGIGGE KFFQRHAMPG 670 680 690 700 710 720 SSNLLELAKV SGDRKPYLQI DRVEGLAAVA QIGGLELHPW NCAPNAYDTP GRLVFDLDPA 730 740 750 760 770 780 PDVDFADVVD AAKEMRQRLT DLGMESFCKT TGGKGLHVVV PLLHGVRDRV SWKEAKAFAQ 790 800 810 820 830 840 GVCQWMADDE PERYLLNMSK KLRNGKIFLD YLRNDRMSTA VGPLSPRARD GATVSMPVTW 850 860 870 880 AQVKSDLDPK RYTVRTVPGL LARSKAWDGY DDAAASIKAA MKKLAGKKK

References

[1]

"Complete Genome Sequence of Bradyrhizobium sp. S23321: Insights into Symbiosis Evolution in Soil Oligotrophs." Okubo T., Tsukui T., Maita H., Okamoto S., Oshima K., Fujisawa T., Saito A., Futamata H., Hattori R., Shimomura Y., Haruta S., Morimoto S., Wang Y., Sakai Y., Hattori M., Aizawa S., Nagashima, K V.P. , Masuda S., Hattori T., Yamashita A., Bao Z., Hayatsu M., Kajiya-Kanegae H., Yoshinaga I., Sakamoto K., Toyota K., Nakao M., Kohara M., Anda M., Niwa R., Jung-Hwan P., Sameshima-Saito R., Tokuda S., Yamamoto S., Yamamoto S., Yokoyama T., Akutsu T., Nakamura Y., Nakahira-Yanaka Y., Takada Hoshino Y., Hirakawa H., Mitsui H., Terasawa K., Itakura M., Sato S., Ikeda-Ohtsubo W., Sakakura N., Kaminuma E., Minamisawa K. Microbes Environ. 0:0-0(2012) Cited for: NUCLEOTIDE SEQUENCE. Strain: S23321 EMBL BAL74756.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AP012279 Genomic DNA. Translation: BAL74756.1.
RefSeq	YP_005448868.1. NC_017082.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	BAL74756; BAL74756; S23_15390.
GeneID	12039877.
KEGG	brs:S23_15390.
Phylogenomic databases
KO	K01971.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR014146. DNA_pol_LigD_ligase_dom. IPR014144. LigD_PE_domain. IPR014145. LigD_pol. IPR012340. NA-bd_OB-fold. IPR014143. NHEJ_ligase_prk. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF13298. LigD_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR02777. LigD_PE_dom. 1 hit. TIGR02778. ligD_pol. 1 hit. TIGR02779. NHEJ_ligase_lig. 1 hit. TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITE	PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

I0G1W9_9BRAD

Accession

Primary (citable) accession number: I0G1W9

Entry history

Integrated into UniProtKB/TrEMBL:	June 13, 2012
Last sequence update:	June 13, 2012
Last modified:	April 3, 2013
This is version 6 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)