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Protein
Submitted name:

ATP-dependent DNA ligase

Gene

S23_15390

Organism
Bradyrhizobium sp. S23321
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciBSP335659:GL9K-1539-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligaseImported
Gene namesi
ORF Names:S23_15390Imported
OrganismiBradyrhizobium sp. S23321Imported
Taxonomic identifieri335659 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeBradyrhizobium
ProteomesiUP000007886: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

I0G1W9-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MLRKLSTYRQ KRDFEQTPEP SGRTAVTRSK QRRFVIQKHD ATRLHYDLRL
60 70 80 90 100
EFDGVFKSWA VTKGPSLDPH DKRLAVEVED HPLDYGDFEG TIPEGQYGGG
110 120 130 140 150
TVMLWDRGTW DCEDPEAGFK KGDLKFTLHG DKLHGSWVLV RMRNDRTGGK
160 170 180 190 200
RTNWLLIKHR DEFASESEDI LSEDKSVASG RAMAEIAKGK GRAPKPFMLA
210 220 230 240 250
KGATTKADAV WQSNRAEETK GRTVKAAPRA ALKTSKAAKK KAMTASTAKE
260 270 280 290 300
VSEMPDFVAP QLCTLVERPP SGDGWCHEIK FDGYRVQLRI EDGKATLRTR
310 320 330 340 350
KGLDWTDKFA AIAKEAATLP DAMIDGEIVA LDHHGAPNFS SLQAALSDGK
360 370 380 390 400
TNELIFFAFD LLFAEGLDCR RLPLSERKTR LKKLVEAPKK KVSQIRFVEH
410 420 430 440 450
FESGGDAVLQ SACKLELEGI VSKKLDAPYR SGRTESWTKA KCRAGHEVVI
460 470 480 490 500
GGWKTTAGKF RSLMAGVHRG DHLAFVGMVG TGFGADKVKR IMPFLKEAAA
510 520 530 540 550
SKSPFGGKNA PKKTRDVHWL KPELVAEIEF AGFTADGNIR QAAFKGLRQD
560 570 580 590 600
KPAEEVEAEA PADIALAKPS AKRRVPAKAA KPSKPSGSAE VMGVVISKPD
610 620 630 640 650
KELWPDAGDG EGVSKLDLAR YFEAVGAWMI EHLKGRPCSI LRAPDGIGGE
660 670 680 690 700
KFFQRHAMPG SSNLLELAKV SGDRKPYLQI DRVEGLAAVA QIGGLELHPW
710 720 730 740 750
NCAPNAYDTP GRLVFDLDPA PDVDFADVVD AAKEMRQRLT DLGMESFCKT
760 770 780 790 800
TGGKGLHVVV PLLHGVRDRV SWKEAKAFAQ GVCQWMADDE PERYLLNMSK
810 820 830 840 850
KLRNGKIFLD YLRNDRMSTA VGPLSPRARD GATVSMPVTW AQVKSDLDPK
860 870 880
RYTVRTVPGL LARSKAWDGY DDAAASIKAA MKKLAGKKK
Length:889
Mass (Da):97,921
Last modified:June 13, 2012 - v1
Checksum:i02B1B4E918A21983
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP012279 Genomic DNA. Translation: BAL74756.1.
RefSeqiWP_015684090.1. NC_017082.1.
YP_005448868.1. NC_017082.1.

Genome annotation databases

EnsemblBacteriaiBAL74756; BAL74756; S23_15390.
GeneIDi12039877.
KEGGibrs:S23_15390.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP012279 Genomic DNA. Translation: BAL74756.1.
RefSeqiWP_015684090.1. NC_017082.1.
YP_005448868.1. NC_017082.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAL74756; BAL74756; S23_15390.
GeneIDi12039877.
KEGGibrs:S23_15390.

Phylogenomic databases

KOiK01971.

Enzyme and pathway databases

BioCyciBSP335659:GL9K-1539-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: S23321Imported.

Entry informationi

Entry nameiI0G1W9_9BRAD
AccessioniPrimary (citable) accession number: I0G1W9
Entry historyi
Integrated into UniProtKB/TrEMBL: June 13, 2012
Last sequence update: June 13, 2012
Last modified: January 7, 2015
This is version 15 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.