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H9GM55 (H9GM55_ANOCA) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 11. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length103 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling By similarity. SAAS SAAS001951 RuleBase RU000528

Subunit structure

The nucleosome is a histone octamer containing two molecules each of H2A, H2B, H3 and H4 assembled in one H3-H4 heterotetramer and two H2A-H2B heterodimers. The octamer wraps approximately 147 bp of DNA By similarity. RuleBase RU000528

Sequence similarities

Belongs to the histone H4 family. RuleBase RU000528

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data. Ensembl ENSACAP00000004275 Ensembl ENSACAP00000015041 Ensembl ENSACAP00000019009 Ensembl ENSACAP00000019109 Ensembl ENSACAP00000004566 Ensembl ENSACAP00000015204 Ensembl ENSACAP00000015206 Ensembl ENSACAP00000017912

Ontologies

Keywords
   Cellular componentChromosome
Nucleosome core SAAS SAAS001951 RuleBase RU000528
Nucleus SAAS SAAS001951 RuleBase RU000528
   LigandDNA-binding
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological_processnucleosome assembly

Inferred from electronic annotation. Source: InterPro

   Cellular_componentnucleosome

Inferred from electronic annotation. Source: UniProtKB-KW

nucleus

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular_functionDNA binding

Inferred from electronic annotation. Source: UniProtKB-KW

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
H9GM55 [UniParc].

Last modified May 16, 2012. Version 1.
Checksum: A9E5DFD3F8B97598

FASTA10311,367
        10         20         30         40         50         60 
MSGRGKGGKG LGKGGAKRHR KVLRDNIQGI TKPAIRRLAR RGGVKRISGL IYEETRGVLK 

        70         80         90        100 
VFLENVIRDA VTYTEHAKRK TVTAMDVVYA LKRQGRTLYG FGG

« Hide

References

« Hide 'large scale' references
[1]"The Genome Sequence of Anolis carolinensis (Green Anole Lizard)."
The Genome Sequencing Platform
Di Palma F., Alfoldi J., Heiman D., Young S., Grabherr M., Johnson J., Lander E.S., Lindblad-Toh K.
Submitted (DEC-2009) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
[2]Ensembl
Submitted (MAR-2012) to UniProtKB
Cited for: IDENTIFICATION.
[3]Ensembl
Submitted (JAN-2013) to UniProtKB
Cited for: IDENTIFICATION.

Cross-references

Sequence databases

RefSeqXP_003224527.1. XM_003224479.1.
XP_003225091.1. XM_003225043.1.
XP_003225092.1. XM_003225044.1.
XP_003225094.1. XM_003225046.1.
XP_003226699.1. XM_003226651.1.
XP_003226704.1. XM_003226656.1.
XP_003227274.1. XM_003227226.1.
XP_003227276.1. XM_003227228.1.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSACAT00000004375; ENSACAP00000004275; ENSACAG00000004414.
ENSACAT00000004671; ENSACAP00000004566; ENSACAG00000004698.
ENSACAT00000015345; ENSACAP00000015041; ENSACAG00000015323.
ENSACAT00000015511; ENSACAP00000015204; ENSACAG00000015478.
ENSACAT00000015513; ENSACAP00000015206; ENSACAG00000015480.
ENSACAT00000021015; ENSACAP00000017912; ENSACAG00000021103.
ENSACAT00000025432; ENSACAP00000019009; ENSACAG00000024530.
ENSACAT00000026640; ENSACAP00000019109; ENSACAG00000023217.
GeneID100552881.
100553870.
100557055.
100557451.
100558030.
100558489.
100558690.
100559083.
KEGGacs:100552881.
acs:100553870.
acs:100557055.
acs:100557451.
acs:100558030.
acs:100558489.
acs:100558690.
acs:100559083.

Phylogenomic databases

GeneTreeENSGT00690000101710.
KOK11254.
OMATAMDIVY.

Family and domain databases

Gene3D1.10.20.10. 1 hit.
InterProIPR009072. Histone-fold.
IPR007125. Histone_core_D.
IPR001951. Histone_H4.
IPR019809. Histone_H4_CS.
[Graphical view]
PANTHERPTHR10484. PTHR10484. 1 hit.
PfamPF00125. Histone. 1 hit.
[Graphical view]
PRINTSPR00623. HISTONEH4.
SMARTSM00417. H4. 1 hit.
[Graphical view]
SUPFAMSSF47113. Histone-fold. 1 hit.
PROSITEPS00047. HISTONE_H4. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameH9GM55_ANOCA
AccessionPrimary (citable) accession number: H9GM55
Entry history
Integrated into UniProtKB/TrEMBL: May 16, 2012
Last sequence update: May 16, 2012
Last modified: May 1, 2013
This is version 11 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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