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Protein

Superoxide dismutase

Gene

sodA

Organism
Flavobacterium indicum (strain DSM 17447 / CIP 109464 / GPTSA100-9)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Destroys radicals which are normally produced within the cells and which are toxic to biological systems.UniRule annotation

Catalytic activityi

2 superoxide + 2 H+ = O2 + H2O2.UniRule annotation

GO - Molecular functioni

  1. metal ion binding Source: InterPro
  2. superoxide dismutase activity Source: UniProtKB-EC
Complete GO annotation...

Keywords - Molecular functioni

OxidoreductaseUniRule annotationImported

Enzyme and pathway databases

BioCyciFIND1094466:GLDB-2690-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Superoxide dismutaseUniRule annotation (EC:1.15.1.1UniRule annotation)
Gene namesi
Name:sodAImported
Ordered Locus Names:KQS_13465Imported
OrganismiFlavobacterium indicum (strain DSM 17447 / CIP 109464 / GPTSA100-9)Imported
Taxonomic identifieri1094466 [NCBI]
Taxonomic lineageiBacteriaBacteroidetesFlavobacteriiaFlavobacterialesFlavobacteriaceaeFlavobacterium
ProteomesiUP000007599: Chromosome

Structurei

3D structure databases

ProteinModelPortaliH8XS06.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the iron/manganese superoxide dismutase family.UniRule annotation

Phylogenomic databases

KOiK04564.

Family and domain databases

InterProiIPR001189. Mn/Fe_SOD.
IPR019833. Mn/Fe_SOD_BS.
IPR019832. Mn/Fe_SOD_C.
IPR019831. Mn/Fe_SOD_N.
[Graphical view]
PANTHERiPTHR11404. PTHR11404. 1 hit.
PfamiPF02777. Sod_Fe_C. 1 hit.
PF00081. Sod_Fe_N. 1 hit.
[Graphical view]
PIRSFiPIRSF000349. SODismutase. 1 hit.
PRINTSiPR01703. MNSODISMTASE.
SUPFAMiSSF46609. SSF46609. 1 hit.
SSF54719. SSF54719. 1 hit.
PROSITEiPS00088. SOD_MN. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

H8XS06-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAFELPKLPY AYDALEPNVD ARTMEIHHTK HHNAYTTNLN AAIQGTDLDG
60 70 80 90 100
KTIENILINL DMNNMAVRNN GGGFYNHNLF WTIMSPNGGG QPTGELANAI
110 120 130 140 150
ERDFGSFEAF KAEFSKAAAT RFGSGWAWLC VHKGGKLEVC STANQDCPLM
160 170 180 190 200
PGIACEGTPI LGLDVWEHAY YLNYQNRRPD YIEAFFNVIN WTEVARRYAT

EK
Length:202
Mass (Da):22,641
Last modified:May 16, 2012 - v1
Checksum:i96E7F99EA7A2E071
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
HE774682 Genomic DNA. Translation: CCG54590.1.
RefSeqiYP_005358647.1. NC_017025.1.

Genome annotation databases

EnsemblBacteriaiCCG54590; CCG54590; KQS_13465.
GeneIDi11989058.
KEGGifin:KQS_13465.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
HE774682 Genomic DNA. Translation: CCG54590.1.
RefSeqiYP_005358647.1. NC_017025.1.

3D structure databases

ProteinModelPortaliH8XS06.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCCG54590; CCG54590; KQS_13465.
GeneIDi11989058.
KEGGifin:KQS_13465.

Phylogenomic databases

KOiK04564.

Enzyme and pathway databases

BioCyciFIND1094466:GLDB-2690-MONOMER.

Family and domain databases

InterProiIPR001189. Mn/Fe_SOD.
IPR019833. Mn/Fe_SOD_BS.
IPR019832. Mn/Fe_SOD_C.
IPR019831. Mn/Fe_SOD_N.
[Graphical view]
PANTHERiPTHR11404. PTHR11404. 1 hit.
PfamiPF02777. Sod_Fe_C. 1 hit.
PF00081. Sod_Fe_N. 1 hit.
[Graphical view]
PIRSFiPIRSF000349. SODismutase. 1 hit.
PRINTSiPR01703. MNSODISMTASE.
SUPFAMiSSF46609. SSF46609. 1 hit.
SSF54719. SSF54719. 1 hit.
PROSITEiPS00088. SOD_MN. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete genome sequence of Flavobacterium indicum GPTSA100-9T, isolated from warm spring water."
    Barbier P., Houel A., Loux V., Poulain J., Bernardet J.-F., Touchon M., Duchaud E.
    Submitted (MAR-2012) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 17447 / CIP 109464 / GPTSA100-9Imported.

Entry informationi

Entry nameiH8XS06_FLAIG
AccessioniPrimary (citable) accession number: H8XS06
Entry historyi
Integrated into UniProtKB/TrEMBL: May 16, 2012
Last sequence update: May 16, 2012
Last modified: March 4, 2015
This is version 15 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.