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Protein
Submitted name:

LigD protein

Gene

ligD

Organism
Bacillus amyloliquefaciens subsp. plantarum YAU B9601-Y2
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciBAMY1155777:GL8E-1340-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
LigD proteinImported (EC:6.5.1.1Imported)
Gene namesi
Name:ligDImported
ORF Names:BANAU_1254Imported
OrganismiBacillus amyloliquefaciens subsp. plantarum YAU B9601-Y2Imported
Taxonomic identifieri1155777 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
ProteomesiUP000007598 Componenti: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. LigD_ligase_dom.
IPR014145. LigD_pol_dom.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

H8XJU1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQPILTSVPP EGSEWRYEVK YDGFRCLLRI DESGVTLTSR NGQTLTNQFP
60 70 80 90 100
EITAFAARCF QHMKDRFPIT LDGELVYLIN PYRADFEHLQ IRGRLKRTEA
110 120 130 140 150
IESTADRRPC RFLAFDLLVL EGAGTVSLPY VKRKRALSKL FKEANLPACP
160 170 180 190 200
HHLAEEAIQY IPEHTDFDAL WAKVVRHDGE GVVAKRASSG WAENKRSPDW
210 220 230 240 250
QKYKHMKTAH VLLTGFNPKN GYVTASVLKD GTAVPIASVS HGMQAEEKNA
260 270 280 290 300
VRTIMETHGK KLPSGEYILE PSICMTVQYL TILQDTLREV SFVSFQFEMD
310 320 330 340 350
WTECTYQQLI LRSKTLPPKL QFTSLDKIVF KKREKTKADF LSYMVKMSDF
360 370 380 390 400
LMPFLKDRAV TVIRYPHGAP GESFFQKNKP DYTPDFVSSV FDGSHEHIVC
410 420 430 440 450
SSIPSLLWLA NQLALEFHVP FQTVHSERPA EIVIDLDPPS RNDFPMAVEA
460 470 480 490 500
AHVLKQLFDS FSITSFPKLS GNKGIQLYIP LSPEAFSYEE TRAFTMLIAD
510 520 530 540 550
YCVRTRPDLF TTERFIKNRN GRLYLDYLQH AEGKTIIAPY STRGNELGTV
560 570 580 590 600
AAPLYWSEVN SSLTPDDYTI DTVVNRVRTE GDPFYDFYRN PQDGPLSIVL

EQIKRKS
Length:607
Mass (Da):69,318
Last modified:May 16, 2012 - v1
Checksum:i691D416E67C63BC3
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
HE774679 Genomic DNA. Translation: CCG49275.1.
RefSeqiYP_005420591.1. NC_017061.1.

Genome annotation databases

EnsemblBacteriaiCCG49275; CCG49275; BANAU_1254.
KEGGibya:BANAU_1254.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
HE774679 Genomic DNA. Translation: CCG49275.1.
RefSeqiYP_005420591.1. NC_017061.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCCG49275; CCG49275; BANAU_1254.
KEGGibya:BANAU_1254.

Phylogenomic databases

KOiK01971.

Enzyme and pathway databases

BioCyciBAMY1155777:GL8E-1340-MONOMER.

Family and domain databases

InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. LigD_ligase_dom.
IPR014145. LigD_pol_dom.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The Genome of Plant Growth-Promoting Bacillus amyloliquefaciens subsp. plantarum Strain YAU B9601-Y2 Contains a Gene Cluster for Mersacidin Synthesis."
    Hao K., He P., Blom J., Rueckert C., Mao Z., Wu Y., He Y., Borriss R.
    J. Bacteriol. 194:3264-3265(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: YAU B9601-Y2Imported.

Entry informationi

Entry nameiH8XJU1_BACAM
AccessioniPrimary (citable) accession number: H8XJU1
Entry historyi
Integrated into UniProtKB/TrEMBL: May 16, 2012
Last sequence update: May 16, 2012
Last modified: April 29, 2015
This is version 18 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.