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H8XJU1 (H8XJU1_BACAM) Unreviewed, UniProtKB/TrEMBL

Last modified January 22, 2014. Version 12. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length607 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL CCG49275.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA ligation involved in DNA repair

Inferred from electronic annotation. Source: InterPro

DNA recombination

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: UniProtKB-EC

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
H8XJU1 [UniParc].

Last modified May 16, 2012. Version 1.
Checksum: 691D416E67C63BC3

FASTA60769,318
        10         20         30         40         50         60 
MQPILTSVPP EGSEWRYEVK YDGFRCLLRI DESGVTLTSR NGQTLTNQFP EITAFAARCF 

        70         80         90        100        110        120 
QHMKDRFPIT LDGELVYLIN PYRADFEHLQ IRGRLKRTEA IESTADRRPC RFLAFDLLVL 

       130        140        150        160        170        180 
EGAGTVSLPY VKRKRALSKL FKEANLPACP HHLAEEAIQY IPEHTDFDAL WAKVVRHDGE 

       190        200        210        220        230        240 
GVVAKRASSG WAENKRSPDW QKYKHMKTAH VLLTGFNPKN GYVTASVLKD GTAVPIASVS 

       250        260        270        280        290        300 
HGMQAEEKNA VRTIMETHGK KLPSGEYILE PSICMTVQYL TILQDTLREV SFVSFQFEMD 

       310        320        330        340        350        360 
WTECTYQQLI LRSKTLPPKL QFTSLDKIVF KKREKTKADF LSYMVKMSDF LMPFLKDRAV 

       370        380        390        400        410        420 
TVIRYPHGAP GESFFQKNKP DYTPDFVSSV FDGSHEHIVC SSIPSLLWLA NQLALEFHVP 

       430        440        450        460        470        480 
FQTVHSERPA EIVIDLDPPS RNDFPMAVEA AHVLKQLFDS FSITSFPKLS GNKGIQLYIP 

       490        500        510        520        530        540 
LSPEAFSYEE TRAFTMLIAD YCVRTRPDLF TTERFIKNRN GRLYLDYLQH AEGKTIIAPY 

       550        560        570        580        590        600 
STRGNELGTV AAPLYWSEVN SSLTPDDYTI DTVVNRVRTE GDPFYDFYRN PQDGPLSIVL 


EQIKRKS 

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References

[1]"The Genome of Plant Growth-Promoting Bacillus amyloliquefaciens subsp. plantarum Strain YAU B9601-Y2 Contains a Gene Cluster for Mersacidin Synthesis."
Hao K., He P., Blom J., Rueckert C., Mao Z., Wu Y., He Y., Borriss R.
J. Bacteriol. 194:3264-3265(2012) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: YAU B9601-Y2 EMBL CCG49275.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
HE774679 Genomic DNA. Translation: CCG49275.1.
RefSeqYP_005420591.1. NC_017061.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCCG49275; CCG49275; BANAU_1254.
GeneID12208025.
KEGGbya:BANAU_1254.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01971.

Enzyme and pathway databases

BioCycBAMY1155777:GL8E-1340-MONOMER.

Family and domain databases

InterProIPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014145. LigD_pol.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamPF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
TIGRFAMsTIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameH8XJU1_BACAM
AccessionPrimary (citable) accession number: H8XJU1
Entry history
Integrated into UniProtKB/TrEMBL: May 16, 2012
Last sequence update: May 16, 2012
Last modified: January 22, 2014
This is version 12 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)