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H8XJU1

- H8XJU1_BACAM

UniProt

H8XJU1 - H8XJU1_BACAM

Protein
Submitted name:

ATP-dependent DNA ligase

Gene

ligD

Organism
Bacillus amyloliquefaciens subsp. plantarum YAU B9601-Y2
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 14 (01 Oct 2014)
      Sequence version 1 (16 May 2012)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: UniProtKB-EC

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciBAMY1155777:GL8E-1340-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP-dependent DNA ligaseImported (EC:6.5.1.1Imported)
    Gene namesi
    Name:ligDImported
    ORF Names:BANAU_1254Imported
    OrganismiBacillus amyloliquefaciens subsp. plantarum YAU B9601-Y2Imported
    Taxonomic identifieri1155777 [NCBI]
    Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
    ProteomesiUP000007598: Chromosome

    Family & Domainsi

    Phylogenomic databases

    KOiK01971.

    Family and domain databases

    InterProiIPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014145. LigD_pol.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view]
    TIGRFAMsiTIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    H8XJU1-1 [UniParc]FASTAAdd to Basket

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    MQPILTSVPP EGSEWRYEVK YDGFRCLLRI DESGVTLTSR NGQTLTNQFP    50
    EITAFAARCF QHMKDRFPIT LDGELVYLIN PYRADFEHLQ IRGRLKRTEA 100
    IESTADRRPC RFLAFDLLVL EGAGTVSLPY VKRKRALSKL FKEANLPACP 150
    HHLAEEAIQY IPEHTDFDAL WAKVVRHDGE GVVAKRASSG WAENKRSPDW 200
    QKYKHMKTAH VLLTGFNPKN GYVTASVLKD GTAVPIASVS HGMQAEEKNA 250
    VRTIMETHGK KLPSGEYILE PSICMTVQYL TILQDTLREV SFVSFQFEMD 300
    WTECTYQQLI LRSKTLPPKL QFTSLDKIVF KKREKTKADF LSYMVKMSDF 350
    LMPFLKDRAV TVIRYPHGAP GESFFQKNKP DYTPDFVSSV FDGSHEHIVC 400
    SSIPSLLWLA NQLALEFHVP FQTVHSERPA EIVIDLDPPS RNDFPMAVEA 450
    AHVLKQLFDS FSITSFPKLS GNKGIQLYIP LSPEAFSYEE TRAFTMLIAD 500
    YCVRTRPDLF TTERFIKNRN GRLYLDYLQH AEGKTIIAPY STRGNELGTV 550
    AAPLYWSEVN SSLTPDDYTI DTVVNRVRTE GDPFYDFYRN PQDGPLSIVL 600
    EQIKRKS 607
    Length:607
    Mass (Da):69,318
    Last modified:May 16, 2012 - v1
    Checksum:i691D416E67C63BC3
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    HE774679 Genomic DNA. Translation: CCG49275.1.
    RefSeqiWP_014417563.1. NC_017061.1.
    YP_005420591.1. NC_017061.1.

    Genome annotation databases

    EnsemblBacteriaiCCG49275; CCG49275; BANAU_1254.
    GeneIDi12208025.
    KEGGibya:BANAU_1254.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    HE774679 Genomic DNA. Translation: CCG49275.1 .
    RefSeqi WP_014417563.1. NC_017061.1.
    YP_005420591.1. NC_017061.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai CCG49275 ; CCG49275 ; BANAU_1254 .
    GeneIDi 12208025.
    KEGGi bya:BANAU_1254.

    Phylogenomic databases

    KOi K01971.

    Enzyme and pathway databases

    BioCyci BAMY1155777:GL8E-1340-MONOMER.

    Family and domain databases

    InterProi IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014145. LigD_pol.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view ]
    TIGRFAMsi TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The Genome of Plant Growth-Promoting Bacillus amyloliquefaciens subsp. plantarum Strain YAU B9601-Y2 Contains a Gene Cluster for Mersacidin Synthesis."
      Hao K., He P., Blom J., Rueckert C., Mao Z., Wu Y., He Y., Borriss R.
      J. Bacteriol. 194:3264-3265(2012) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: YAU B9601-Y2Imported.

    Entry informationi

    Entry nameiH8XJU1_BACAM
    AccessioniPrimary (citable) accession number: H8XJU1
    Entry historyi
    Integrated into UniProtKB/TrEMBL: May 16, 2012
    Last sequence update: May 16, 2012
    Last modified: October 1, 2014
    This is version 14 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3