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H8XJU1

- H8XJU1_BACAM

UniProt

H8XJU1 - H8XJU1_BACAM

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Protein
Submitted name: ATP-dependent DNA ligase
Gene
ligD, BANAU_1254
Organism
Bacillus amyloliquefaciens subsp. plantarum YAU B9601-Y2
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: UniProtKB-EC
Complete GO annotation...

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciBAMY1155777:GL8E-1340-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligaseImported (EC:6.5.1.1Imported)
Gene namesi
Name:ligDImported
ORF Names:BANAU_1254Imported
OrganismiBacillus amyloliquefaciens subsp. plantarum YAU B9601-Y2Imported
Taxonomic identifieri1155777 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
ProteomesiUP000007598: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014145. LigD_pol.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

H8XJU1-1 [UniParc]FASTAAdd to Basket

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MQPILTSVPP EGSEWRYEVK YDGFRCLLRI DESGVTLTSR NGQTLTNQFP    50
EITAFAARCF QHMKDRFPIT LDGELVYLIN PYRADFEHLQ IRGRLKRTEA 100
IESTADRRPC RFLAFDLLVL EGAGTVSLPY VKRKRALSKL FKEANLPACP 150
HHLAEEAIQY IPEHTDFDAL WAKVVRHDGE GVVAKRASSG WAENKRSPDW 200
QKYKHMKTAH VLLTGFNPKN GYVTASVLKD GTAVPIASVS HGMQAEEKNA 250
VRTIMETHGK KLPSGEYILE PSICMTVQYL TILQDTLREV SFVSFQFEMD 300
WTECTYQQLI LRSKTLPPKL QFTSLDKIVF KKREKTKADF LSYMVKMSDF 350
LMPFLKDRAV TVIRYPHGAP GESFFQKNKP DYTPDFVSSV FDGSHEHIVC 400
SSIPSLLWLA NQLALEFHVP FQTVHSERPA EIVIDLDPPS RNDFPMAVEA 450
AHVLKQLFDS FSITSFPKLS GNKGIQLYIP LSPEAFSYEE TRAFTMLIAD 500
YCVRTRPDLF TTERFIKNRN GRLYLDYLQH AEGKTIIAPY STRGNELGTV 550
AAPLYWSEVN SSLTPDDYTI DTVVNRVRTE GDPFYDFYRN PQDGPLSIVL 600
EQIKRKS 607
Length:607
Mass (Da):69,318
Last modified:May 16, 2012 - v1
Checksum:i691D416E67C63BC3
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
HE774679 Genomic DNA. Translation: CCG49275.1.
RefSeqiWP_014417563.1. NC_017061.1.
YP_005420591.1. NC_017061.1.

Genome annotation databases

EnsemblBacteriaiCCG49275; CCG49275; BANAU_1254.
GeneIDi12208025.
KEGGibya:BANAU_1254.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
HE774679 Genomic DNA. Translation: CCG49275.1 .
RefSeqi WP_014417563.1. NC_017061.1.
YP_005420591.1. NC_017061.1.

3D structure databases

ModBasei Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai CCG49275 ; CCG49275 ; BANAU_1254 .
GeneIDi 12208025.
KEGGi bya:BANAU_1254.

Phylogenomic databases

KOi K01971.

Enzyme and pathway databases

BioCyci BAMY1155777:GL8E-1340-MONOMER.

Family and domain databases

InterProi IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014145. LigD_pol.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view ]
TIGRFAMsi TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "The Genome of Plant Growth-Promoting Bacillus amyloliquefaciens subsp. plantarum Strain YAU B9601-Y2 Contains a Gene Cluster for Mersacidin Synthesis."
    Hao K., He P., Blom J., Rueckert C., Mao Z., Wu Y., He Y., Borriss R.
    J. Bacteriol. 194:3264-3265(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: YAU B9601-Y2Imported.

Entry informationi

Entry nameiH8XJU1_BACAM
AccessioniPrimary (citable) accession number: H8XJU1
Entry historyi
Integrated into UniProtKB/TrEMBL: May 16, 2012
Last sequence update: May 16, 2012
Last modified: September 3, 2014
This is version 13 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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