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H8MW57

- H8MW57_CORCM

UniProt

H8MW57 - H8MW57_CORCM

Protein
Submitted name:

ATP-dependent DNA ligase

Gene

ligB

Organism
Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) (Myxococcus coralloides)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 12 (01 Oct 2014)
      Sequence version 1 (16 May 2012)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA binding Source: InterPro
    3. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciCCOR1144275:GLBO-6606-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP-dependent DNA ligaseImported
    Gene namesi
    Name:ligBImported
    Ordered Locus Names:COCOR_06602Imported
    OrganismiCorallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) (Myxococcus coralloides)Imported
    Taxonomic identifieri1144275 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaDeltaproteobacteriaMyxococcalesCystobacterineaeMyxococcaceaeCorallococcus
    ProteomesiUP000007587: Chromosome

    Structurei

    3D structure databases

    ProteinModelPortaliH8MW57.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    KOiK01971.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    H8MW57-1 [UniParc]FASTAAdd to Basket

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    MRALADLYDT LDQTTSTNAK VEAMARYFRT APPEDAAWGL FFLTGQKLKR    50
    LLTSKLLAGW TMELTGVPDW LFDEVYASVG DLAEVIALLL DGANLPPEHA 100
    EELPLSRWLE ERLLPLRGLD AAEQRERVVG WWKSMPRREL FLLNKMLTGE 150
    LRVGVSNTLV VRAIAQVTGL PPPSVAHRLM GTWTPTKAFF EQLVAPDVSD 200
    GHVSRPYPYY LASPLEQPAE SLGELSDWLV EWKWDGIRGQ LIRRQGDVFL 250
    WSRGEELITE RFPEITEAAR ALPEGTVLDG EVMAYEDGVP LPFARLQRRI 300
    GRQKLTPKVL AEAPAAFVVY DLLEQDGKDL RELPLRERRA RLEALLKDHP 350
    RFPISPTVTA SSWEALAELR KESRARNVEG LMIKRLDSVY QTGRKRGDWW 400
    KWKIDPYTVD AVLLYAHPGH GRRSSLYTDY TFAVWNGEDL LPVTKAYSGL 450
    TDEEIGKLDR WIRAHTREKF GPVRSVDPEQ VFELHFEAIA PSPRHKSGIA 500
    LRFPRIARWR ADKTARDADT LDSLKGLLHA AH 532
    Length:532
    Mass (Da):60,476
    Last modified:May 16, 2012 - v1
    Checksum:i827EA26A52F31DA6
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP003389 Genomic DNA. Translation: AFE09217.1.
    RefSeqiYP_005372555.1. NC_017030.1.

    Genome annotation databases

    EnsemblBacteriaiAFE09217; AFE09217; COCOR_06602.
    GeneIDi11983205.
    KEGGiccx:COCOR_06602.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP003389 Genomic DNA. Translation: AFE09217.1 .
    RefSeqi YP_005372555.1. NC_017030.1.

    3D structure databases

    ProteinModelPortali H8MW57.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AFE09217 ; AFE09217 ; COCOR_06602 .
    GeneIDi 11983205.
    KEGGi ccx:COCOR_06602.

    Phylogenomic databases

    KOi K01971.

    Enzyme and pathway databases

    BioCyci CCOR1144275:GLBO-6606-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome sequence of the fruiting myxobacterium Corallococcus coralloides DSM 2259."
      Huntley S., Zhang Y., Treuner-Lange A., Sensen C.W., Sogaard-Andersen L.
      Submitted (MAR-2012) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 25202 / DSM 2259 / NBRC 100086 / M2Imported.

    Entry informationi

    Entry nameiH8MW57_CORCM
    AccessioniPrimary (citable) accession number: H8MW57
    Entry historyi
    Integrated into UniProtKB/TrEMBL: May 16, 2012
    Last sequence update: May 16, 2012
    Last modified: October 1, 2014
    This is version 12 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3