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Protein
Submitted name:

ATP-dependent DNA ligase

Gene

ligB

Organism
Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) (Myxococcus coralloides)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciCCOR1144275:GLBO-6606-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligaseImported
Gene namesi
Name:ligBImported
Ordered Locus Names:COCOR_06602Imported
OrganismiCorallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) (Myxococcus coralloides)Imported
Taxonomic identifieri1144275 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaDeltaproteobacteriaMyxococcalesCystobacterineaeMyxococcaceaeCorallococcus
ProteomesiUP000007587: Chromosome

Structurei

3D structure databases

ProteinModelPortaliH8MW57.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

H8MW57-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MRALADLYDT LDQTTSTNAK VEAMARYFRT APPEDAAWGL FFLTGQKLKR
60 70 80 90 100
LLTSKLLAGW TMELTGVPDW LFDEVYASVG DLAEVIALLL DGANLPPEHA
110 120 130 140 150
EELPLSRWLE ERLLPLRGLD AAEQRERVVG WWKSMPRREL FLLNKMLTGE
160 170 180 190 200
LRVGVSNTLV VRAIAQVTGL PPPSVAHRLM GTWTPTKAFF EQLVAPDVSD
210 220 230 240 250
GHVSRPYPYY LASPLEQPAE SLGELSDWLV EWKWDGIRGQ LIRRQGDVFL
260 270 280 290 300
WSRGEELITE RFPEITEAAR ALPEGTVLDG EVMAYEDGVP LPFARLQRRI
310 320 330 340 350
GRQKLTPKVL AEAPAAFVVY DLLEQDGKDL RELPLRERRA RLEALLKDHP
360 370 380 390 400
RFPISPTVTA SSWEALAELR KESRARNVEG LMIKRLDSVY QTGRKRGDWW
410 420 430 440 450
KWKIDPYTVD AVLLYAHPGH GRRSSLYTDY TFAVWNGEDL LPVTKAYSGL
460 470 480 490 500
TDEEIGKLDR WIRAHTREKF GPVRSVDPEQ VFELHFEAIA PSPRHKSGIA
510 520 530
LRFPRIARWR ADKTARDADT LDSLKGLLHA AH
Length:532
Mass (Da):60,476
Last modified:May 16, 2012 - v1
Checksum:i827EA26A52F31DA6
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003389 Genomic DNA. Translation: AFE09217.1.
RefSeqiWP_014399389.1. NC_017030.1.
YP_005372555.1. NC_017030.1.

Genome annotation databases

EnsemblBacteriaiAFE09217; AFE09217; COCOR_06602.
GeneIDi11983205.
KEGGiccx:COCOR_06602.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003389 Genomic DNA. Translation: AFE09217.1.
RefSeqiWP_014399389.1. NC_017030.1.
YP_005372555.1. NC_017030.1.

3D structure databases

ProteinModelPortaliH8MW57.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAFE09217; AFE09217; COCOR_06602.
GeneIDi11983205.
KEGGiccx:COCOR_06602.

Phylogenomic databases

KOiK01971.

Enzyme and pathway databases

BioCyciCCOR1144275:GLBO-6606-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Genome sequence of the fruiting myxobacterium Corallococcus coralloides DSM 2259."
    Huntley S., Zhang Y., Treuner-Lange A., Sensen C.W., Sogaard-Andersen L.
    Submitted (MAR-2012) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 25202 / DSM 2259 / NBRC 100086 / M2Imported.

Entry informationi

Entry nameiH8MW57_CORCM
AccessioniPrimary (citable) accession number: H8MW57
Entry historyi
Integrated into UniProtKB/TrEMBL: May 16, 2012
Last sequence update: May 16, 2012
Last modified: February 4, 2015
This is version 14 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.