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H8MW57

- H8MW57_CORCM

UniProt

H8MW57 - H8MW57_CORCM

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Protein
Submitted name:

ATP-dependent DNA ligase

Gene
ligB, COCOR_06602
Organism
Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) (Myxococcus coralloides)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciCCOR1144275:GLBO-6606-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligaseImported
Gene namesi
Name:ligBImported
Ordered Locus Names:COCOR_06602Imported
OrganismiCorallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) (Myxococcus coralloides)Imported
Taxonomic identifieri1144275 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaDeltaproteobacteriaMyxococcalesCystobacterineaeMyxococcaceaeCorallococcus
ProteomesiUP000007587: Chromosome

Structurei

3D structure databases

ProteinModelPortaliH8MW57.

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

H8MW57-1 [UniParc]FASTAAdd to Basket

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MRALADLYDT LDQTTSTNAK VEAMARYFRT APPEDAAWGL FFLTGQKLKR    50
LLTSKLLAGW TMELTGVPDW LFDEVYASVG DLAEVIALLL DGANLPPEHA 100
EELPLSRWLE ERLLPLRGLD AAEQRERVVG WWKSMPRREL FLLNKMLTGE 150
LRVGVSNTLV VRAIAQVTGL PPPSVAHRLM GTWTPTKAFF EQLVAPDVSD 200
GHVSRPYPYY LASPLEQPAE SLGELSDWLV EWKWDGIRGQ LIRRQGDVFL 250
WSRGEELITE RFPEITEAAR ALPEGTVLDG EVMAYEDGVP LPFARLQRRI 300
GRQKLTPKVL AEAPAAFVVY DLLEQDGKDL RELPLRERRA RLEALLKDHP 350
RFPISPTVTA SSWEALAELR KESRARNVEG LMIKRLDSVY QTGRKRGDWW 400
KWKIDPYTVD AVLLYAHPGH GRRSSLYTDY TFAVWNGEDL LPVTKAYSGL 450
TDEEIGKLDR WIRAHTREKF GPVRSVDPEQ VFELHFEAIA PSPRHKSGIA 500
LRFPRIARWR ADKTARDADT LDSLKGLLHA AH 532
Length:532
Mass (Da):60,476
Last modified:May 16, 2012 - v1
Checksum:i827EA26A52F31DA6
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP003389 Genomic DNA. Translation: AFE09217.1.
RefSeqiYP_005372555.1. NC_017030.1.

Genome annotation databases

EnsemblBacteriaiAFE09217; AFE09217; COCOR_06602.
GeneIDi11983205.
KEGGiccx:COCOR_06602.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP003389 Genomic DNA. Translation: AFE09217.1 .
RefSeqi YP_005372555.1. NC_017030.1.

3D structure databases

ProteinModelPortali H8MW57.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AFE09217 ; AFE09217 ; COCOR_06602 .
GeneIDi 11983205.
KEGGi ccx:COCOR_06602.

Phylogenomic databases

KOi K01971.

Enzyme and pathway databases

BioCyci CCOR1144275:GLBO-6606-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view ]
SUPFAMi SSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Genome sequence of the fruiting myxobacterium Corallococcus coralloides DSM 2259."
    Huntley S., Zhang Y., Treuner-Lange A., Sensen C.W., Sogaard-Andersen L.
    Submitted (MAR-2012) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 25202 / DSM 2259 / NBRC 100086 / M2.

Entry informationi

Entry nameiH8MW57_CORCM
AccessioniPrimary (citable) accession number: H8MW57
Entry historyi
Integrated into UniProtKB/TrEMBL: May 16, 2012
Last sequence update: May 16, 2012
Last modified: October 16, 2013
This is version 11 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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