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H8MSG9

- H8MSG9_CORCM

UniProt

H8MSG9 - H8MSG9_CORCM

Protein
Submitted name:

D-alanine--D-alanine ligase

Gene

ddlA

Organism
Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) (Myxococcus coralloides)
Status
Unreviewed - Annotation score: 2 out of 5- Protein predictedi
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    • History
      Entry version 14 (01 Oct 2014)
      Sequence version 1 (16 May 2012)
      Previous versions | rss
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    Functioni

    Cell wall formation.SAAS annotation

    Catalytic activityi

    ATP + 2 D-alanine = ADP + phosphate + D-alanyl-D-alanine.SAAS annotation

    Cofactori

    Binds 2 magnesium or manganese ions per subunit.SAAS annotation

    Pathwayi

    GO - Molecular functioni

    1. ATP binding Source: UniProtKB-KW
    2. D-alanine-D-alanine ligase activity Source: InterPro
    3. metal ion binding Source: UniProtKB-KW

    GO - Biological processi

    1. peptidoglycan biosynthetic process Source: UniProtKB-UniPathway
    2. regulation of cell shape Source: UniProtKB-KW

    Keywords - Molecular functioni

    LigaseSAAS annotationImported

    Keywords - Biological processi

    Cell shape, Cell wall biogenesis/degradationSAAS annotation, Peptidoglycan synthesisSAAS annotation

    Keywords - Ligandi

    ATP-bindingSAAS annotation, MagnesiumSAAS annotation, ManganeseSAAS annotation, Metal-bindingSAAS annotation, Nucleotide-binding

    Enzyme and pathway databases

    BioCyciCCOR1144275:GLBO-3856-MONOMER.
    UniPathwayiUPA00219.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    D-alanine--D-alanine ligaseImported
    Gene namesi
    Name:ddlAImported
    Ordered Locus Names:COCOR_03852Imported
    OrganismiCorallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) (Myxococcus coralloides)Imported
    Taxonomic identifieri1144275 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaDeltaproteobacteriaMyxococcalesCystobacterineaeMyxococcaceaeCorallococcus
    ProteomesiUP000007587: Chromosome

    Subcellular locationi

    Cytoplasm SAAS annotation

    GO - Cellular componenti

    1. cytoplasm Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    CytoplasmSAAS annotation

    Family & Domainsi

    Sequence similaritiesi

    Contains ATP-grasp domain.SAAS annotation

    Phylogenomic databases

    KOiK01921.

    Family and domain databases

    Gene3Di3.30.1490.20. 2 hits.
    3.30.470.20. 3 hits.
    InterProiIPR011761. ATP-grasp.
    IPR013815. ATP_grasp_subdomain_1.
    IPR013816. ATP_grasp_subdomain_2.
    IPR005905. D_ala_D_ala.
    IPR011095. Dala_Dala_lig_C.
    IPR016185. PreATP-grasp_dom.
    [Graphical view]
    PANTHERiPTHR23132. PTHR23132. 1 hit.
    PfamiPF07478. Dala_Dala_lig_C. 2 hits.
    [Graphical view]
    SUPFAMiSSF52440. SSF52440. 2 hits.
    PROSITEiPS50975. ATP_GRASP. 2 hits.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    H8MSG9-1 [UniParc]FASTAAdd to Basket

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    MRIALTYNLR LSDSEEEAEF DTQETVNTLA GAIERLGHRL ERFEVSGPAS    50
    RTVARLEAYS PDLIFNTAEG RRGRFREAFY PALFDELGFA YTGSDAYALA 100
    LTLDKQLTKL ILSKHGIRTP GWQYVEKLSE LQPENLRFPV IVKPNFEGSS 150
    KGITQDSVAE TLEQVREKVA KALEKYPAGV LVEEYISGRD LTVPFLAAVD 200
    NDYDGVLAPV EYVIDPEASQ GRKYAIYDYE LKTRREKSVS VRAPANIPAK 250
    MSEDVRTMAQ KILQVLDCRD LGRLDFRVSD AGVPYFLEIN ALPSLEPGAG 300
    IYAAAELEGL HLDGVINSII QSAGKRHKIR DNKSRQGRPA RKSGPLRVGF 350
    SFNVKRVKPS ATAETVQEDS EAEYDSPNTL QAIREAIASW GHEVIDLEAT 400
    AELPTVLSST PLDIVFNIAE GFKGRNRESQ VPAMLELLDI PYTGSDPATL 450
    SLALDKALAK KIVRQAGILT PNFQLMVTGK ERLNKEFTTF PLIVKPVAEG 500
    SSKGVVTKSV CYSEAELRDV VKEIAGKYQQ PALIEEYIGG REFTVGLLGE 550
    RRPRVLPPME IVFLDKAEKN PVYSFQHKLD WTDRIRYDAP AKIEPALLEK 600
    LRTAARNSFM ALGCRDVARI DFRMDDKGRI YFIECNPLPG LTPGWSDLVL 650
    IAAGAGMDYR TLIGEIMAPA IRRYKEREAR RAQTENPAGT QAPPLNKVVQ 700
    RIEEQNARAN ASAPAENTPA PRPELKS 727
    Length:727
    Mass (Da):80,757
    Last modified:May 16, 2012 - v1
    Checksum:i13AE7F8545CE4238
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP003389 Genomic DNA. Translation: AFE08537.1.
    RefSeqiWP_014396664.1. NC_017030.1.
    YP_005369825.1. NC_017030.1.

    Genome annotation databases

    EnsemblBacteriaiAFE08537; AFE08537; COCOR_03852.
    GeneIDi11984476.
    KEGGiccx:COCOR_03852.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP003389 Genomic DNA. Translation: AFE08537.1 .
    RefSeqi WP_014396664.1. NC_017030.1.
    YP_005369825.1. NC_017030.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AFE08537 ; AFE08537 ; COCOR_03852 .
    GeneIDi 11984476.
    KEGGi ccx:COCOR_03852.

    Phylogenomic databases

    KOi K01921.

    Enzyme and pathway databases

    UniPathwayi UPA00219 .
    BioCyci CCOR1144275:GLBO-3856-MONOMER.

    Family and domain databases

    Gene3Di 3.30.1490.20. 2 hits.
    3.30.470.20. 3 hits.
    InterProi IPR011761. ATP-grasp.
    IPR013815. ATP_grasp_subdomain_1.
    IPR013816. ATP_grasp_subdomain_2.
    IPR005905. D_ala_D_ala.
    IPR011095. Dala_Dala_lig_C.
    IPR016185. PreATP-grasp_dom.
    [Graphical view ]
    PANTHERi PTHR23132. PTHR23132. 1 hit.
    Pfami PF07478. Dala_Dala_lig_C. 2 hits.
    [Graphical view ]
    SUPFAMi SSF52440. SSF52440. 2 hits.
    PROSITEi PS50975. ATP_GRASP. 2 hits.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome sequence of the fruiting myxobacterium Corallococcus coralloides DSM 2259."
      Huntley S., Zhang Y., Treuner-Lange A., Sensen C.W., Sogaard-Andersen L.
      Submitted (MAR-2012) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 25202 / DSM 2259 / NBRC 100086 / M2Imported.

    Entry informationi

    Entry nameiH8MSG9_CORCM
    AccessioniPrimary (citable) accession number: H8MSG9
    Entry historyi
    Integrated into UniProtKB/TrEMBL: May 16, 2012
    Last sequence update: May 16, 2012
    Last modified: October 1, 2014
    This is version 14 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3