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H8MLH4

- H8MLH4_CORCM

UniProt

H8MLH4 - H8MLH4_CORCM

Protein
Submitted name:

ATP dependent DNA ligase

Gene

ligD

Organism
Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) (Myxococcus coralloides)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 11 (01 Oct 2014)
      Sequence version 1 (16 May 2012)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro
    3. DNA primase activity Source: InterPro

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciCCOR1144275:GLBO-958-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP dependent DNA ligaseImported
    Gene namesi
    Name:ligDImported
    Ordered Locus Names:COCOR_00956Imported
    OrganismiCorallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) (Myxococcus coralloides)Imported
    Taxonomic identifieri1144275 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaDeltaproteobacteriaMyxococcalesCystobacterineaeMyxococcaceaeCorallococcus
    ProteomesiUP000007587: Chromosome

    Family & Domainsi

    Phylogenomic databases

    KOiK01971.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS00333. DNA_LIGASE_A2. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    H8MLH4-1 [UniParc]FASTAAdd to Basket

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    MKTSDTQRRL RRYRTKRDFH LTPEPSPDAK APKSSAPVFV IHKHDATRLH    50
    YDLRLEIGGV LVSWAIPKGP SHDPSVKRLA VQTEDHPRSY ADFEGHIPDD 100
    QYGGGDSLLW ESGTFEVVPP GDAEAQLKRG HLEVVLHGAK LKGRWHLIRT 150
    RPRGGKAQWL FFKAKDDYAK AGYDVTVERP ESVKSGQVET QGPRKPGVLR 200
    NKKPAAPVRK AAKKPARLPS TPEKLLERVW PPMLARLAVS DEVHDETHAY 250
    EVKYDGFRAV CALTHGKIAF QSRRGNDLSG RFARLTAALR ELPAKDVVVD 300
    GEIVALDAKG RSRFQILQNT EEGAEQRFMV FDLLWLDGED LRELPYEERR 350
    ARLEKLMAGA QLPLQLSEKV DLPLSRGLLE ARRKGWEGLI AKRKDSPYTG 400
    TRSGDWLKLK VVAGQEVVIL GYLPIKNAKA KSEIGALRVG VRGKEGFHDV 450
    GKVGTGYTSK DRRELRWLLD ATRVKKPAAV DAPTNTDTVW VKPKYVAQVN 500
    FTEWTKDGRL RHPVFQGLRS DKVPQEVVRE HPAPIEGAAR RGSRRAPVQA 550
    AARTAKAPAV KTPRGKSRHA PEVVLTHGDR VLFPQAGLTK ADVFAYYEQA 600
    APLLLPVLAD RPLAHQQWPG GIQAPGFFRH ELSGIPAWMP TLRVRHEDKT 650
    LRHVNVKDTS ALLWLANQSA LTLHMWLSHA PRLAQPDFVV FDLDPGEGGW 700
    KDVVKVATLL HARLDELGLK SFPKTSGKRG LHVLVPLAPG HTYARTQAFA 750
    DARARELEEE LGDIATTERS IRERGGRLYI DAGQNARGKT VVAPYSLRAV 800
    EGAPFSAPLE WSEVNSRLDP HRFRLKTLKK RLDAVGDLFA PVLRVKQVLP 850
    DE 852
    Length:852
    Mass (Da):95,149
    Last modified:May 16, 2012 - v1
    Checksum:iA5606445F9510562
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP003389 Genomic DNA. Translation: AFE09218.1.
    RefSeqiYP_005366962.1. NC_017030.1.

    Genome annotation databases

    EnsemblBacteriaiAFE09218; AFE09218; COCOR_00956.
    GeneIDi11986060.
    KEGGiccx:COCOR_00956.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP003389 Genomic DNA. Translation: AFE09218.1 .
    RefSeqi YP_005366962.1. NC_017030.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AFE09218 ; AFE09218 ; COCOR_00956 .
    GeneIDi 11986060.
    KEGGi ccx:COCOR_00956.

    Phylogenomic databases

    KOi K01971.

    Enzyme and pathway databases

    BioCyci CCOR1144275:GLBO-958-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS00333. DNA_LIGASE_A2. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome sequence of the fruiting myxobacterium Corallococcus coralloides DSM 2259."
      Huntley S., Zhang Y., Treuner-Lange A., Sensen C.W., Sogaard-Andersen L.
      Submitted (MAR-2012) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 25202 / DSM 2259 / NBRC 100086 / M2Imported.

    Entry informationi

    Entry nameiH8MLH4_CORCM
    AccessioniPrimary (citable) accession number: H8MLH4
    Entry historyi
    Integrated into UniProtKB/TrEMBL: May 16, 2012
    Last sequence update: May 16, 2012
    Last modified: October 1, 2014
    This is version 11 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3