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H8MLH4

- H8MLH4_CORCM

UniProt

H8MLH4 - H8MLH4_CORCM

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Protein
Submitted name:

ATP dependent DNA ligase

Gene

ligD

Organism
Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) (Myxococcus coralloides)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciCCOR1144275:GLBO-958-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Name:ligDImported
Ordered Locus Names:COCOR_00956Imported
OrganismiCorallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) (Myxococcus coralloides)Imported
Taxonomic identifieri1144275 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaDeltaproteobacteriaMyxococcalesCystobacterineaeMyxococcaceaeCorallococcus
ProteomesiUP000007587: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

H8MLH4 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MKTSDTQRRL RRYRTKRDFH LTPEPSPDAK APKSSAPVFV IHKHDATRLH
60 70 80 90 100
YDLRLEIGGV LVSWAIPKGP SHDPSVKRLA VQTEDHPRSY ADFEGHIPDD
110 120 130 140 150
QYGGGDSLLW ESGTFEVVPP GDAEAQLKRG HLEVVLHGAK LKGRWHLIRT
160 170 180 190 200
RPRGGKAQWL FFKAKDDYAK AGYDVTVERP ESVKSGQVET QGPRKPGVLR
210 220 230 240 250
NKKPAAPVRK AAKKPARLPS TPEKLLERVW PPMLARLAVS DEVHDETHAY
260 270 280 290 300
EVKYDGFRAV CALTHGKIAF QSRRGNDLSG RFARLTAALR ELPAKDVVVD
310 320 330 340 350
GEIVALDAKG RSRFQILQNT EEGAEQRFMV FDLLWLDGED LRELPYEERR
360 370 380 390 400
ARLEKLMAGA QLPLQLSEKV DLPLSRGLLE ARRKGWEGLI AKRKDSPYTG
410 420 430 440 450
TRSGDWLKLK VVAGQEVVIL GYLPIKNAKA KSEIGALRVG VRGKEGFHDV
460 470 480 490 500
GKVGTGYTSK DRRELRWLLD ATRVKKPAAV DAPTNTDTVW VKPKYVAQVN
510 520 530 540 550
FTEWTKDGRL RHPVFQGLRS DKVPQEVVRE HPAPIEGAAR RGSRRAPVQA
560 570 580 590 600
AARTAKAPAV KTPRGKSRHA PEVVLTHGDR VLFPQAGLTK ADVFAYYEQA
610 620 630 640 650
APLLLPVLAD RPLAHQQWPG GIQAPGFFRH ELSGIPAWMP TLRVRHEDKT
660 670 680 690 700
LRHVNVKDTS ALLWLANQSA LTLHMWLSHA PRLAQPDFVV FDLDPGEGGW
710 720 730 740 750
KDVVKVATLL HARLDELGLK SFPKTSGKRG LHVLVPLAPG HTYARTQAFA
760 770 780 790 800
DARARELEEE LGDIATTERS IRERGGRLYI DAGQNARGKT VVAPYSLRAV
810 820 830 840 850
EGAPFSAPLE WSEVNSRLDP HRFRLKTLKK RLDAVGDLFA PVLRVKQVLP

DE
Length:852
Mass (Da):95,149
Last modified:May 16, 2012 - v1
Checksum:iA5606445F9510562
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP003389 Genomic DNA. Translation: AFE09218.1.
RefSeqiYP_005366962.1. NC_017030.1.

Genome annotation databases

EnsemblBacteriaiAFE09218; AFE09218; COCOR_00956.
GeneIDi11986060.
KEGGiccx:COCOR_00956.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP003389 Genomic DNA. Translation: AFE09218.1 .
RefSeqi YP_005366962.1. NC_017030.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AFE09218 ; AFE09218 ; COCOR_00956 .
GeneIDi 11986060.
KEGGi ccx:COCOR_00956.

Phylogenomic databases

KOi K01971.

Enzyme and pathway databases

BioCyci CCOR1144275:GLBO-958-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Genome sequence of the fruiting myxobacterium Corallococcus coralloides DSM 2259."
    Huntley S., Zhang Y., Treuner-Lange A., Sensen C.W., Sogaard-Andersen L.
    Submitted (MAR-2012) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 25202 / DSM 2259 / NBRC 100086 / M2Imported.

Entry informationi

Entry nameiH8MLH4_CORCM
AccessioniPrimary (citable) accession number: H8MLH4
Entry historyi
Integrated into UniProtKB/TrEMBL: May 16, 2012
Last sequence update: May 16, 2012
Last modified: October 1, 2014
This is version 11 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3