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H8MLH4

- H8MLH4_CORCM

UniProt

H8MLH4 - H8MLH4_CORCM

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Protein
Submitted name:

ATP dependent DNA ligase

Gene
ligD, COCOR_00956
Organism
Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) (Myxococcus coralloides)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciCCOR1144275:GLBO-958-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Name:ligDImported
Ordered Locus Names:COCOR_00956Imported
OrganismiCorallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) (Myxococcus coralloides)Imported
Taxonomic identifieri1144275 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaDeltaproteobacteriaMyxococcalesCystobacterineaeMyxococcaceaeCorallococcus
ProteomesiUP000007587: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

H8MLH4-1 [UniParc]FASTAAdd to Basket

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MKTSDTQRRL RRYRTKRDFH LTPEPSPDAK APKSSAPVFV IHKHDATRLH    50
YDLRLEIGGV LVSWAIPKGP SHDPSVKRLA VQTEDHPRSY ADFEGHIPDD 100
QYGGGDSLLW ESGTFEVVPP GDAEAQLKRG HLEVVLHGAK LKGRWHLIRT 150
RPRGGKAQWL FFKAKDDYAK AGYDVTVERP ESVKSGQVET QGPRKPGVLR 200
NKKPAAPVRK AAKKPARLPS TPEKLLERVW PPMLARLAVS DEVHDETHAY 250
EVKYDGFRAV CALTHGKIAF QSRRGNDLSG RFARLTAALR ELPAKDVVVD 300
GEIVALDAKG RSRFQILQNT EEGAEQRFMV FDLLWLDGED LRELPYEERR 350
ARLEKLMAGA QLPLQLSEKV DLPLSRGLLE ARRKGWEGLI AKRKDSPYTG 400
TRSGDWLKLK VVAGQEVVIL GYLPIKNAKA KSEIGALRVG VRGKEGFHDV 450
GKVGTGYTSK DRRELRWLLD ATRVKKPAAV DAPTNTDTVW VKPKYVAQVN 500
FTEWTKDGRL RHPVFQGLRS DKVPQEVVRE HPAPIEGAAR RGSRRAPVQA 550
AARTAKAPAV KTPRGKSRHA PEVVLTHGDR VLFPQAGLTK ADVFAYYEQA 600
APLLLPVLAD RPLAHQQWPG GIQAPGFFRH ELSGIPAWMP TLRVRHEDKT 650
LRHVNVKDTS ALLWLANQSA LTLHMWLSHA PRLAQPDFVV FDLDPGEGGW 700
KDVVKVATLL HARLDELGLK SFPKTSGKRG LHVLVPLAPG HTYARTQAFA 750
DARARELEEE LGDIATTERS IRERGGRLYI DAGQNARGKT VVAPYSLRAV 800
EGAPFSAPLE WSEVNSRLDP HRFRLKTLKK RLDAVGDLFA PVLRVKQVLP 850
DE 852
Length:852
Mass (Da):95,149
Last modified:May 16, 2012 - v1
Checksum:iA5606445F9510562
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP003389 Genomic DNA. Translation: AFE09218.1.
RefSeqiYP_005366962.1. NC_017030.1.

Genome annotation databases

EnsemblBacteriaiAFE09218; AFE09218; COCOR_00956.
GeneIDi11986060.
KEGGiccx:COCOR_00956.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP003389 Genomic DNA. Translation: AFE09218.1 .
RefSeqi YP_005366962.1. NC_017030.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AFE09218 ; AFE09218 ; COCOR_00956 .
GeneIDi 11986060.
KEGGi ccx:COCOR_00956.

Phylogenomic databases

KOi K01971.

Enzyme and pathway databases

BioCyci CCOR1144275:GLBO-958-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Genome sequence of the fruiting myxobacterium Corallococcus coralloides DSM 2259."
    Huntley S., Zhang Y., Treuner-Lange A., Sensen C.W., Sogaard-Andersen L.
    Submitted (MAR-2012) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 25202 / DSM 2259 / NBRC 100086 / M2.

Entry informationi

Entry nameiH8MLH4_CORCM
AccessioniPrimary (citable) accession number: H8MLH4
Entry historyi
Integrated into UniProtKB/TrEMBL: May 16, 2012
Last sequence update: May 16, 2012
Last modified: October 16, 2013
This is version 10 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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