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H8MLH4 (H8MLH4_CORCM) Unreviewed, UniProtKB/TrEMBL

Last modified April 3, 2013. Version 8. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length852 AA.
Sequence statusComplete.
Protein existencePredicted

Sequences

Sequence LengthMass (Da)Tools
H8MLH4 [UniParc].

Last modified May 16, 2012. Version 1.
Checksum: A5606445F9510562

FASTA85295,149
        10         20         30         40         50         60 
MKTSDTQRRL RRYRTKRDFH LTPEPSPDAK APKSSAPVFV IHKHDATRLH YDLRLEIGGV 

        70         80         90        100        110        120 
LVSWAIPKGP SHDPSVKRLA VQTEDHPRSY ADFEGHIPDD QYGGGDSLLW ESGTFEVVPP 

       130        140        150        160        170        180 
GDAEAQLKRG HLEVVLHGAK LKGRWHLIRT RPRGGKAQWL FFKAKDDYAK AGYDVTVERP 

       190        200        210        220        230        240 
ESVKSGQVET QGPRKPGVLR NKKPAAPVRK AAKKPARLPS TPEKLLERVW PPMLARLAVS 

       250        260        270        280        290        300 
DEVHDETHAY EVKYDGFRAV CALTHGKIAF QSRRGNDLSG RFARLTAALR ELPAKDVVVD 

       310        320        330        340        350        360 
GEIVALDAKG RSRFQILQNT EEGAEQRFMV FDLLWLDGED LRELPYEERR ARLEKLMAGA 

       370        380        390        400        410        420 
QLPLQLSEKV DLPLSRGLLE ARRKGWEGLI AKRKDSPYTG TRSGDWLKLK VVAGQEVVIL 

       430        440        450        460        470        480 
GYLPIKNAKA KSEIGALRVG VRGKEGFHDV GKVGTGYTSK DRRELRWLLD ATRVKKPAAV 

       490        500        510        520        530        540 
DAPTNTDTVW VKPKYVAQVN FTEWTKDGRL RHPVFQGLRS DKVPQEVVRE HPAPIEGAAR 

       550        560        570        580        590        600 
RGSRRAPVQA AARTAKAPAV KTPRGKSRHA PEVVLTHGDR VLFPQAGLTK ADVFAYYEQA 

       610        620        630        640        650        660 
APLLLPVLAD RPLAHQQWPG GIQAPGFFRH ELSGIPAWMP TLRVRHEDKT LRHVNVKDTS 

       670        680        690        700        710        720 
ALLWLANQSA LTLHMWLSHA PRLAQPDFVV FDLDPGEGGW KDVVKVATLL HARLDELGLK 

       730        740        750        760        770        780 
SFPKTSGKRG LHVLVPLAPG HTYARTQAFA DARARELEEE LGDIATTERS IRERGGRLYI 

       790        800        810        820        830        840 
DAGQNARGKT VVAPYSLRAV EGAPFSAPLE WSEVNSRLDP HRFRLKTLKK RLDAVGDLFA 

       850 
PVLRVKQVLP DE

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References

[1]"Genome sequence of the fruiting myxobacterium Corallococcus coralloides DSM 2259."
Huntley S., Zhang Y., Treuner-Lange A., Sensen C.W., Sogaard-Andersen L.
Submitted (MAR-2012) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 25202 / DSM 2259 / NBRC 100086 / M2.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP003389 Genomic DNA. Translation: AFE09218.1.
RefSeqYP_005366962.1. NC_017030.1.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAFE09218; AFE09218; COCOR_00956.
GeneID11986060.
KEGGccx:COCOR_00956.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01971.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEPS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameH8MLH4_CORCM
AccessionPrimary (citable) accession number: H8MLH4
Entry history
Integrated into UniProtKB/TrEMBL: May 16, 2012
Last sequence update: May 16, 2012
Last modified: April 3, 2013
This is version 8 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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