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H8JJC8 (H8JJC8_MYCIT) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 12. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length755 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Sequences

Sequence LengthMass (Da)Tools
H8JJC8 [UniParc].

Last modified May 16, 2012. Version 1.
Checksum: 48B07435B752DEBD

FASTA75584,351
        10         20         30         40         50         60 
MSPTAGPRVK LTNAEKVLYP ATGTTKSDIF DYYTRIAEVM IPHIAGRPAT RKRWPNGVEQ 

        70         80         90        100        110        120 
ESFFEKQLAA SAPDWLPRAS VTHRSGTTTY PIIDDPTGLA WIAQQAALEV HVPQWRFVAE 

       130        140        150        160        170        180 
WTRSRAEELK PGPATRLVFD LDPGEGVTMA QMSKVARAVR DLIAGIGLRT FPLTSGSKGL 

       190        200        210        220        230        240 
HLYAPLDEPV SSKGATVLAK RVAQQLEKTM PKLVTSTMTK SLRAGKIFLD WSQNNGSKTT 

       250        260        270        280        290        300 
IAPYSLRGRE HPTVAAPRTW DELDDPSLRQ LRYDEVLSRV ARDGDLLAEL DEDAPVPDRL 

       310        320        330        340        350        360 
TKYRSMRDAS KTPEPVPAAK PAVGQGNTFV IQEHHARRLH YDFRLERDGV LVSWAVPKNL 

       370        380        390        400        410        420 
PETTSVNHLA VHTEDHPLEY GGFEGVIPKG EYGAGKVIIW DSGTYDAEKF LDDEVIVNLH 

       430        440        450        460        470        480 
GSKISGRYAL IQTNGDQWLA HRMKDQKVFE FDTIAPMLAT HGSVTALKAG QWAFEGKWDG 

       490        500        510        520        530        540 
YRLLIEADHG AFRVRSRRGR EVTQEYRELR WLADDLADHH VVLDGEAVVL DSSGVPNFHE 

       550        560        570        580        590        600 
MQNRGRGSRV EFWAFDLLYL DGRSLLRARY RDRRKLLEML AAGSRLIVPD LLPGDGREAL 

       610        620        630        640        650        660 
EHSAERGWEG VIAKKRDSTY QPGRRSSSWI KDKHWNTQEV VIGGWKAGEG GRSSGIGSLL 

       670        680        690        700        710        720 
MGIPTAGGLH FAGRVGTGFT DRDLANLKKT LAPLHTDESP FDPPLPRSEA RGVTYVRPEL 

       730        740        750 
VGEVRYSEWT PDDRLRQSSW RGLRPDKEAS EVVRE 

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References

[1]"Complete Genome Sequence of Mycobacterium intracellulare Clinical Strain MOTT-64, Belonging to the INT1 Genotype."
Kim B.J., Choi B.S., Lim J.S., Choi I.Y., Kook Y.H., Kim B.J.
J. Bacteriol. 194:3268-3268(2012) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: MOTT-64 EMBL AFC52451.1.
[2]Kim B.-J., Lee J.H., Lim J.-S., Choi I.-Y., Choi B.-S., Lim J.-S.
Submitted (FEB-2012) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: MOTT-64 EMBL AFC52451.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP003324 Genomic DNA. Translation: AFC52451.1.
RefSeqYP_005346772.1. NC_016948.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAFC52451; AFC52451; OCQ_09380.
GeneID11897164.
KEGGmir:OCQ_09380.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01971.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameH8JJC8_MYCIT
AccessionPrimary (citable) accession number: H8JJC8
Entry history
Integrated into UniProtKB/TrEMBL: May 16, 2012
Last sequence update: May 16, 2012
Last modified: April 16, 2014
This is version 12 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)