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Protein
Submitted name:

DNA polymerase LigD ligase subunit

Gene

OCQ_30550

Organism
Mycobacterium intracellulare MOTT-64
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Names & Taxonomyi

Protein namesi
Submitted name:
DNA polymerase LigD ligase subunitImported (EC:6.5.1.1Imported)
Gene namesi
ORF Names:OCQ_30550Imported
OrganismiMycobacterium intracellulare MOTT-64Imported
Taxonomic identifieri1138383 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeMycobacteriaceaeMycobacteriumMycobacterium avium complex (MAC)
ProteomesiUP000008003: Chromosome

Structurei

3D structure databases

ProteinModelPortaliH8JEE2.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

H8JEE2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTDFASLPGA VREALYDEPV PDWRSPTLAT LTDDRFSDPG WIFERKFDGM
60 70 80 90 100
RCLAFRDGDR VRLLSRNRQP LNGTYPELVD ALAAQPVTRF VVDGEVVAFD
110 120 130 140 150
GRRTSFARLQ GRLGLTDPDV ARASPVRVFY YVFDLLHLDG MSTVEVPLLW
160 170 180 190 200
RKRLLRKAID FADPLRCAPH RVGDGIAAYR RACERGDEGV IAKRADSTYQ
210 220 230 240 250
GGRSKNWLKF KCVRDQEFVV GGYTSPKGSR VELGALMLGY YDGGDLVYAG
260 270 280 290 300
KVGTGFDDAT LRRLHARLSP ITRDRPPFAR GLVREAGANW VSPEMVVQIG
310 320 330
FSEWTRDGKL RHPRYLGMRT DKEPGEVVRE TH
Length:332
Mass (Da):37,413
Last modified:May 16, 2012 - v1
Checksum:i3D121EBAE8BD517A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003324 Genomic DNA. Translation: AFC54567.1.
RefSeqiYP_005348888.1. NC_016948.1.

Genome annotation databases

EnsemblBacteriaiAFC54567; AFC54567; OCQ_30550.
GeneIDi11899298.
KEGGimir:OCQ_30550.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003324 Genomic DNA. Translation: AFC54567.1.
RefSeqiYP_005348888.1. NC_016948.1.

3D structure databases

ProteinModelPortaliH8JEE2.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAFC54567; AFC54567; OCQ_30550.
GeneIDi11899298.
KEGGimir:OCQ_30550.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete Genome Sequence of Mycobacterium intracellulare Clinical Strain MOTT-64, Belonging to the INT1 Genotype."
    Kim B.J., Choi B.S., Lim J.S., Choi I.Y., Kook Y.H., Kim B.J.
    J. Bacteriol. 194:3268-3268(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: MOTT-64Imported.

Entry informationi

Entry nameiH8JEE2_MYCIT
AccessioniPrimary (citable) accession number: H8JEE2
Entry historyi
Integrated into UniProtKB/TrEMBL: May 16, 2012
Last sequence update: May 16, 2012
Last modified: March 4, 2015
This is version 14 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.