H8JEE2 (H8JEE2_MYCIT) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
DNA polymerase LigD ligase subunit EMBL AFC54567.1
EC=6.5.1.1 EMBL AFC54567.1

Gene names

ORF Names:

OCQ_30550 EMBL AFC54567.1

Organism

Mycobacterium intracellulare MOTT-64 EMBL AFC54567.1

Taxonomic identifier

1138383 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Actinobacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Corynebacterineae › Mycobacteriaceae › Mycobacterium › Mycobacterium avium complex (MAC) › Mycobacterium intracellulare

Protein attributes

Sequence length	332 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL AFC54567.1
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	H8JEE2 [UniParc]. Last modified May 16, 2012. Version 1. Checksum: 3D121EBAE8BD517A	FASTA	332	37,413
	10 20 30 40 50 60 MTDFASLPGA VREALYDEPV PDWRSPTLAT LTDDRFSDPG WIFERKFDGM RCLAFRDGDR 70 80 90 100 110 120 VRLLSRNRQP LNGTYPELVD ALAAQPVTRF VVDGEVVAFD GRRTSFARLQ GRLGLTDPDV 130 140 150 160 170 180 ARASPVRVFY YVFDLLHLDG MSTVEVPLLW RKRLLRKAID FADPLRCAPH RVGDGIAAYR 190 200 210 220 230 240 RACERGDEGV IAKRADSTYQ GGRSKNWLKF KCVRDQEFVV GGYTSPKGSR VELGALMLGY 250 260 270 280 290 300 YDGGDLVYAG KVGTGFDDAT LRRLHARLSP ITRDRPPFAR GLVREAGANW VSPEMVVQIG 310 320 330 FSEWTRDGKL RHPRYLGMRT DKEPGEVVRE TH

References

[1]	"Complete Genome Sequence of Mycobacterium intracellulare Clinical Strain MOTT-64, Belonging to the INT1 Genotype." Kim B.J., Choi B.S., Lim J.S., Choi I.Y., Kook Y.H., Kim B.J. J. Bacteriol. 194:3268-3268(2012) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: MOTT-64 EMBL AFC54567.1.
[2]	Kim B.-J., Lee J.H., Lim J.-S., Choi I.-Y., Choi B.-S., Lim J.-S. Submitted (FEB-2012) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: MOTT-64 EMBL AFC54567.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP003324 Genomic DNA. Translation: AFC54567.1.
RefSeq	YP_005348888.1. NC_016948.1.
3D structure databases
ProteinModelPortal	H8JEE2.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AFC54567; AFC54567; OCQ_30550.
GeneID	11899298.
KEGG	mir:OCQ_30550.
Phylogenomic databases
KO	K01971.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR014146. DNA_pol_LigD_ligase_dom. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITE	PS00697. DNA_LIGASE_A1. 1 hit. PS00333. DNA_LIGASE_A2. 1 hit. PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

H8JEE2_MYCIT

Accession

Primary (citable) accession number: H8JEE2

Entry history

Integrated into UniProtKB/TrEMBL:	May 16, 2012
Last sequence update:	May 16, 2012
Last modified:	April 3, 2013
This is version 8 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)