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H8JEE2 (H8JEE2_MYCIT) Unreviewed, UniProtKB/TrEMBL

Last modified January 22, 2014. Version 10. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length332 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL AFC54567.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA ligation involved in DNA repair

Inferred from electronic annotation. Source: InterPro

DNA recombination

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: UniProtKB-EC

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
H8JEE2 [UniParc].

Last modified May 16, 2012. Version 1.
Checksum: 3D121EBAE8BD517A

FASTA33237,413
        10         20         30         40         50         60 
MTDFASLPGA VREALYDEPV PDWRSPTLAT LTDDRFSDPG WIFERKFDGM RCLAFRDGDR 

        70         80         90        100        110        120 
VRLLSRNRQP LNGTYPELVD ALAAQPVTRF VVDGEVVAFD GRRTSFARLQ GRLGLTDPDV 

       130        140        150        160        170        180 
ARASPVRVFY YVFDLLHLDG MSTVEVPLLW RKRLLRKAID FADPLRCAPH RVGDGIAAYR 

       190        200        210        220        230        240 
RACERGDEGV IAKRADSTYQ GGRSKNWLKF KCVRDQEFVV GGYTSPKGSR VELGALMLGY 

       250        260        270        280        290        300 
YDGGDLVYAG KVGTGFDDAT LRRLHARLSP ITRDRPPFAR GLVREAGANW VSPEMVVQIG 

       310        320        330 
FSEWTRDGKL RHPRYLGMRT DKEPGEVVRE TH 

« Hide

References

[1]"Complete Genome Sequence of Mycobacterium intracellulare Clinical Strain MOTT-64, Belonging to the INT1 Genotype."
Kim B.J., Choi B.S., Lim J.S., Choi I.Y., Kook Y.H., Kim B.J.
J. Bacteriol. 194:3268-3268(2012) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: MOTT-64 EMBL AFC54567.1.
[2]Kim B.-J., Lee J.H., Lim J.-S., Choi I.-Y., Choi B.-S., Lim J.-S.
Submitted (FEB-2012) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: MOTT-64 EMBL AFC54567.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP003324 Genomic DNA. Translation: AFC54567.1.
RefSeqYP_005348888.1. NC_016948.1.

3D structure databases

ProteinModelPortalH8JEE2.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAFC54567; AFC54567; OCQ_30550.
GeneID11899298.
KEGGmir:OCQ_30550.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01971.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEPS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameH8JEE2_MYCIT
AccessionPrimary (citable) accession number: H8JEE2
Entry history
Integrated into UniProtKB/TrEMBL: May 16, 2012
Last sequence update: May 16, 2012
Last modified: January 22, 2014
This is version 10 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)