Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

H8JEE2

- H8JEE2_MYCIT

UniProt

H8JEE2 - H8JEE2_MYCIT

(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Protein
Submitted name:

DNA polymerase LigD ligase subunit

Gene

OCQ_30550

Organism
Mycobacterium intracellulare MOTT-64
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Names & Taxonomyi

Protein namesi
Submitted name:
DNA polymerase LigD ligase subunitImported (EC:6.5.1.1Imported)
Gene namesi
ORF Names:OCQ_30550Imported
OrganismiMycobacterium intracellulare MOTT-64Imported
Taxonomic identifieri1138383 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeMycobacteriaceaeMycobacteriumMycobacterium avium complex (MAC)
ProteomesiUP000008003: Chromosome

Structurei

3D structure databases

ProteinModelPortaliH8JEE2.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

H8JEE2-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MTDFASLPGA VREALYDEPV PDWRSPTLAT LTDDRFSDPG WIFERKFDGM
60 70 80 90 100
RCLAFRDGDR VRLLSRNRQP LNGTYPELVD ALAAQPVTRF VVDGEVVAFD
110 120 130 140 150
GRRTSFARLQ GRLGLTDPDV ARASPVRVFY YVFDLLHLDG MSTVEVPLLW
160 170 180 190 200
RKRLLRKAID FADPLRCAPH RVGDGIAAYR RACERGDEGV IAKRADSTYQ
210 220 230 240 250
GGRSKNWLKF KCVRDQEFVV GGYTSPKGSR VELGALMLGY YDGGDLVYAG
260 270 280 290 300
KVGTGFDDAT LRRLHARLSP ITRDRPPFAR GLVREAGANW VSPEMVVQIG
310 320 330
FSEWTRDGKL RHPRYLGMRT DKEPGEVVRE TH
Length:332
Mass (Da):37,413
Last modified:May 16, 2012 - v1
Checksum:i3D121EBAE8BD517A
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP003324 Genomic DNA. Translation: AFC54567.1.
RefSeqiYP_005348888.1. NC_016948.1.

Genome annotation databases

EnsemblBacteriaiAFC54567; AFC54567; OCQ_30550.
GeneIDi11899298.
KEGGimir:OCQ_30550.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP003324 Genomic DNA. Translation: AFC54567.1 .
RefSeqi YP_005348888.1. NC_016948.1.

3D structure databases

ProteinModelPortali H8JEE2.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AFC54567 ; AFC54567 ; OCQ_30550 .
GeneIDi 11899298.
KEGGi mir:OCQ_30550.

Phylogenomic databases

KOi K01971.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete Genome Sequence of Mycobacterium intracellulare Clinical Strain MOTT-64, Belonging to the INT1 Genotype."
    Kim B.J., Choi B.S., Lim J.S., Choi I.Y., Kook Y.H., Kim B.J.
    J. Bacteriol. 194:3268-3268(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: MOTT-64Imported.

Entry informationi

Entry nameiH8JEE2_MYCIT
AccessioniPrimary (citable) accession number: H8JEE2
Entry historyi
Integrated into UniProtKB/TrEMBL: May 16, 2012
Last sequence update: May 16, 2012
Last modified: October 1, 2014
This is version 12 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3