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H8JEE2

- H8JEE2_MYCIT

UniProt

H8JEE2 - H8JEE2_MYCIT

Protein
Submitted name:

DNA polymerase LigD ligase subunit

Gene

OCQ_30550

Organism
Mycobacterium intracellulare MOTT-64
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 12 (01 Oct 2014)
      Sequence version 1 (16 May 2012)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: UniProtKB-EC

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA polymerase LigD ligase subunitImported (EC:6.5.1.1Imported)
    Gene namesi
    ORF Names:OCQ_30550Imported
    OrganismiMycobacterium intracellulare MOTT-64Imported
    Taxonomic identifieri1138383 [NCBI]
    Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeMycobacteriaceaeMycobacteriumMycobacterium avium complex (MAC)
    ProteomesiUP000008003: Chromosome

    Structurei

    3D structure databases

    ProteinModelPortaliH8JEE2.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    KOiK01971.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02779. NHEJ_ligase_lig. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    PS00333. DNA_LIGASE_A2. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    H8JEE2-1 [UniParc]FASTAAdd to Basket

    « Hide

    MTDFASLPGA VREALYDEPV PDWRSPTLAT LTDDRFSDPG WIFERKFDGM    50
    RCLAFRDGDR VRLLSRNRQP LNGTYPELVD ALAAQPVTRF VVDGEVVAFD 100
    GRRTSFARLQ GRLGLTDPDV ARASPVRVFY YVFDLLHLDG MSTVEVPLLW 150
    RKRLLRKAID FADPLRCAPH RVGDGIAAYR RACERGDEGV IAKRADSTYQ 200
    GGRSKNWLKF KCVRDQEFVV GGYTSPKGSR VELGALMLGY YDGGDLVYAG 250
    KVGTGFDDAT LRRLHARLSP ITRDRPPFAR GLVREAGANW VSPEMVVQIG 300
    FSEWTRDGKL RHPRYLGMRT DKEPGEVVRE TH 332
    Length:332
    Mass (Da):37,413
    Last modified:May 16, 2012 - v1
    Checksum:i3D121EBAE8BD517A
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP003324 Genomic DNA. Translation: AFC54567.1.
    RefSeqiYP_005348888.1. NC_016948.1.

    Genome annotation databases

    EnsemblBacteriaiAFC54567; AFC54567; OCQ_30550.
    GeneIDi11899298.
    KEGGimir:OCQ_30550.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP003324 Genomic DNA. Translation: AFC54567.1 .
    RefSeqi YP_005348888.1. NC_016948.1.

    3D structure databases

    ProteinModelPortali H8JEE2.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AFC54567 ; AFC54567 ; OCQ_30550 .
    GeneIDi 11899298.
    KEGGi mir:OCQ_30550.

    Phylogenomic databases

    KOi K01971.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02779. NHEJ_ligase_lig. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    PS00333. DNA_LIGASE_A2. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete Genome Sequence of Mycobacterium intracellulare Clinical Strain MOTT-64, Belonging to the INT1 Genotype."
      Kim B.J., Choi B.S., Lim J.S., Choi I.Y., Kook Y.H., Kim B.J.
      J. Bacteriol. 194:3268-3268(2012) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: MOTT-64Imported.

    Entry informationi

    Entry nameiH8JEE2_MYCIT
    AccessioniPrimary (citable) accession number: H8JEE2
    Entry historyi
    Integrated into UniProtKB/TrEMBL: May 16, 2012
    Last sequence update: May 16, 2012
    Last modified: October 1, 2014
    This is version 12 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3