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H8IQK0 (H8IQK0_MYCIA) Unreviewed, UniProtKB/TrEMBL

Last modified January 22, 2014. Version 10. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length332 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL AFC44199.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA ligation involved in DNA repair

Inferred from electronic annotation. Source: InterPro

DNA recombination

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: UniProtKB-EC

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
H8IQK0 [UniParc].

Last modified May 16, 2012. Version 1.
Checksum: 8FFE310E3DC40B8D

FASTA33237,452
        10         20         30         40         50         60 
MTDFASLPGA VREALYDEPV PDWRSPTLAT LTDDRFSDPH WIFERKFDGM RCLAFRDGDR 

        70         80         90        100        110        120 
VRLLSRNRQP LNGTYPELVD ALAAQPVTRF VVDGEVVAFD GRRTSFARLQ GRLGLTDPDV 

       130        140        150        160        170        180 
ARASPVRVFY YVFDLLHLDG MSTVEVPLLW RKRLLRKAID FADPLRCAPH RVGDGIAAYR 

       190        200        210        220        230        240 
RACERGDEGV IAKRADSTYQ GGRSKNWLKF KCVRDQEFVV GGYTSPKGSR VELGALMLGY 

       250        260        270        280        290        300 
YEGGDLVYAG KVGTGFDDAT LRRLHARLSP ITRDTPPFAR GLVREAGANW VSPEMVVQIG 

       310        320        330 
FSEWTRDGKL RHPRYLGMRT DKEPGEVVRE TH 

« Hide

References

[1]"Complete genome sequence of Mycobacterium intracellulare strain ATCC 13950T."
Kim B.J., Choi B.S., Lim J.S., Choi I.Y., Lee J.H., Chun J., Kook Y.H., Kim B.J.
J. Bacteriol. 194:2750-2750(2012) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 13950 / DSM 43223 / JCM 6384 / NCTC 13025 / 3600.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP003322 Genomic DNA. Translation: AFC44199.1.
RefSeqYP_005338520.1. NC_016946.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAFC44199; AFC44199; OCU_29800.
GeneID11909721.
KEGGmia:OCU_29800.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01971.

Enzyme and pathway databases

BioCycMINT487521:GLGN-3014-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEPS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameH8IQK0_MYCIA
AccessionPrimary (citable) accession number: H8IQK0
Entry history
Integrated into UniProtKB/TrEMBL: May 16, 2012
Last sequence update: May 16, 2012
Last modified: January 22, 2014
This is version 10 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)