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H8IQK0

- H8IQK0_MYCIA

UniProt

H8IQK0 - H8IQK0_MYCIA

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Protein
Submitted name:

DNA polymerase LigD ligase subunit

Gene

OCU_29800

Organism
Mycobacterium intracellulare (strain ATCC 13950 / DSM 43223 / JCM 6384 / NCTC 13025 / 3600)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciMINT487521:GLGN-3014-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA polymerase LigD ligase subunitImported (EC:6.5.1.1Imported)
Gene namesi
Ordered Locus Names:OCU_29800Imported
OrganismiMycobacterium intracellulare (strain ATCC 13950 / DSM 43223 / JCM 6384 / NCTC 13025 / 3600)Imported
Taxonomic identifieri487521 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeMycobacteriaceaeMycobacteriumMycobacterium avium complex (MAC)
ProteomesiUP000008004: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

H8IQK0-1 [UniParc]FASTAAdd to Basket

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        10         20         30         40         50
MTDFASLPGA VREALYDEPV PDWRSPTLAT LTDDRFSDPH WIFERKFDGM
60 70 80 90 100
RCLAFRDGDR VRLLSRNRQP LNGTYPELVD ALAAQPVTRF VVDGEVVAFD
110 120 130 140 150
GRRTSFARLQ GRLGLTDPDV ARASPVRVFY YVFDLLHLDG MSTVEVPLLW
160 170 180 190 200
RKRLLRKAID FADPLRCAPH RVGDGIAAYR RACERGDEGV IAKRADSTYQ
210 220 230 240 250
GGRSKNWLKF KCVRDQEFVV GGYTSPKGSR VELGALMLGY YEGGDLVYAG
260 270 280 290 300
KVGTGFDDAT LRRLHARLSP ITRDTPPFAR GLVREAGANW VSPEMVVQIG
310 320 330
FSEWTRDGKL RHPRYLGMRT DKEPGEVVRE TH
Length:332
Mass (Da):37,452
Last modified:May 16, 2012 - v1
Checksum:i8FFE310E3DC40B8D
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP003322 Genomic DNA. Translation: AFC44199.1.
RefSeqiYP_005338520.1. NC_016946.1.

Genome annotation databases

EnsemblBacteriaiAFC44199; AFC44199; OCU_29800.
GeneIDi11909721.
KEGGimia:OCU_29800.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP003322 Genomic DNA. Translation: AFC44199.1 .
RefSeqi YP_005338520.1. NC_016946.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AFC44199 ; AFC44199 ; OCU_29800 .
GeneIDi 11909721.
KEGGi mia:OCU_29800.

Phylogenomic databases

KOi K01971.

Enzyme and pathway databases

BioCyci MINT487521:GLGN-3014-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete genome sequence of Mycobacterium intracellulare strain ATCC 13950T."
    Kim B.J., Choi B.S., Lim J.S., Choi I.Y., Lee J.H., Chun J., Kook Y.H., Kim B.J.
    J. Bacteriol. 194:2750-2750(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 13950 / DSM 43223 / JCM 6384 / NCTC 13025 / 3600Imported.

Entry informationi

Entry nameiH8IQK0_MYCIA
AccessioniPrimary (citable) accession number: H8IQK0
Entry historyi
Integrated into UniProtKB/TrEMBL: May 16, 2012
Last sequence update: May 16, 2012
Last modified: October 1, 2014
This is version 11 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3