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H8IQK0

- H8IQK0_MYCIA

UniProt

H8IQK0 - H8IQK0_MYCIA

Protein
Submitted name:

DNA polymerase LigD ligase subunit

Gene

OCU_29800

Organism
Mycobacterium intracellulare (strain ATCC 13950 / DSM 43223 / JCM 6384 / NCTC 13025 / 3600)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 11 (01 Oct 2014)
      Sequence version 1 (16 May 2012)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: UniProtKB-EC

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciMINT487521:GLGN-3014-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA polymerase LigD ligase subunitImported (EC:6.5.1.1Imported)
    Gene namesi
    Ordered Locus Names:OCU_29800Imported
    OrganismiMycobacterium intracellulare (strain ATCC 13950 / DSM 43223 / JCM 6384 / NCTC 13025 / 3600)Imported
    Taxonomic identifieri487521 [NCBI]
    Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeMycobacteriaceaeMycobacteriumMycobacterium avium complex (MAC)
    ProteomesiUP000008004: Chromosome

    Family & Domainsi

    Phylogenomic databases

    KOiK01971.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02779. NHEJ_ligase_lig. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    PS00333. DNA_LIGASE_A2. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    H8IQK0-1 [UniParc]FASTAAdd to Basket

    « Hide

    MTDFASLPGA VREALYDEPV PDWRSPTLAT LTDDRFSDPH WIFERKFDGM    50
    RCLAFRDGDR VRLLSRNRQP LNGTYPELVD ALAAQPVTRF VVDGEVVAFD 100
    GRRTSFARLQ GRLGLTDPDV ARASPVRVFY YVFDLLHLDG MSTVEVPLLW 150
    RKRLLRKAID FADPLRCAPH RVGDGIAAYR RACERGDEGV IAKRADSTYQ 200
    GGRSKNWLKF KCVRDQEFVV GGYTSPKGSR VELGALMLGY YEGGDLVYAG 250
    KVGTGFDDAT LRRLHARLSP ITRDTPPFAR GLVREAGANW VSPEMVVQIG 300
    FSEWTRDGKL RHPRYLGMRT DKEPGEVVRE TH 332
    Length:332
    Mass (Da):37,452
    Last modified:May 16, 2012 - v1
    Checksum:i8FFE310E3DC40B8D
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP003322 Genomic DNA. Translation: AFC44199.1.
    RefSeqiYP_005338520.1. NC_016946.1.

    Genome annotation databases

    EnsemblBacteriaiAFC44199; AFC44199; OCU_29800.
    GeneIDi11909721.
    KEGGimia:OCU_29800.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP003322 Genomic DNA. Translation: AFC44199.1 .
    RefSeqi YP_005338520.1. NC_016946.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AFC44199 ; AFC44199 ; OCU_29800 .
    GeneIDi 11909721.
    KEGGi mia:OCU_29800.

    Phylogenomic databases

    KOi K01971.

    Enzyme and pathway databases

    BioCyci MINT487521:GLGN-3014-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02779. NHEJ_ligase_lig. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    PS00333. DNA_LIGASE_A2. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete genome sequence of Mycobacterium intracellulare strain ATCC 13950T."
      Kim B.J., Choi B.S., Lim J.S., Choi I.Y., Lee J.H., Chun J., Kook Y.H., Kim B.J.
      J. Bacteriol. 194:2750-2750(2012) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 13950 / DSM 43223 / JCM 6384 / NCTC 13025 / 3600Imported.

    Entry informationi

    Entry nameiH8IQK0_MYCIA
    AccessioniPrimary (citable) accession number: H8IQK0
    Entry historyi
    Integrated into UniProtKB/TrEMBL: May 16, 2012
    Last sequence update: May 16, 2012
    Last modified: October 1, 2014
    This is version 11 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3