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Protein
Submitted name:

Uncharacterized protein

Gene

OCU_40510

Organism
Mycobacterium intracellulare (strain ATCC 13950 / DSM 43223 / JCM 6384 / NCTC 13025 / 3600)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulationUniRule annotation

Keywords - Ligandi

DNA-bindingUniRule annotationSAAS annotation

Enzyme and pathway databases

BioCyciMINT487521:GLGN-4094-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
Gene namesi
Ordered Locus Names:OCU_40510Imported
OrganismiMycobacterium intracellulare (strain ATCC 13950 / DSM 43223 / JCM 6384 / NCTC 13025 / 3600)Imported
Taxonomic identifieri487521 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaCorynebacterialesMycobacteriaceaeMycobacteriumMycobacterium avium complex (MAC)
ProteomesiUP000008004 Componenti: Chromosome

Structurei

3D structure databases

ProteinModelPortaliH8IN87.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Contains 1 HTH luxR-type DNA-binding domain.UniRule annotation

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
1.10.3210.10. 1 hit.
InterProiIPR003607. HD/PDEase_dom.
IPR006674. HD_domain.
IPR016032. Sig_transdc_resp-reg_C-effctor.
IPR000792. Tscrpt_reg_LuxR_C.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00196. GerE. 1 hit.
[Graphical view]
PRINTSiPR00038. HTHLUXR.
SMARTiSM00471. HDc. 1 hit.
SM00421. HTH_LUXR. 1 hit.
[Graphical view]
SUPFAMiSSF46894. SSF46894. 1 hit.
PROSITEiPS50043. HTH_LUXR_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

H8IN87-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPESELPTRA ELLAALSVAI DLGLGQPAEH MLRAALIATR LADRLGLCAD
60 70 80 90 100
ERDCAYYTTL IMWVGCHADS HEYARWFGDD IAVRHDSYLV DWSGIPYLRF
110 120 130 140 150
LASNVGRGQP LAHRMAVLAT LFANARGHIS RLIHSHCASA ALLADRIGLS
160 170 180 190 200
PDVQAALAFA FERYDGGGLP AGARGETIPI QMRIAQLADM VEVHHRTYGV
210 220 230 240 250
APGAVAMVSS RRGGQFDPRV ADAFLRDADA ILAGPPAGDA WAAALGEAPD
260 270 280 290 300
RHQRLDDASL DALLVALGDF VDLKCPFTLG HSRAVARLAG DAALAAGMDT
310 320 330 340 350
DAVALTRRAG HVHDLGRIGV SNHIWSRQGP LSASEFERVR LHPYLTVRVL
360 370 380 390 400
NQVPGLGRLA EVAGNHHECL DGSGYPRGLA GPALHMPDRI LAVAVCYQSA
410 420 430 440 450
REPRPYREPM SAGAAARRLR GRAQAGELDA VAVEAVLHAA GQPAQRPNLR
460 470 480 490 500
PDRLTPREVE VLCLVARGAS NKEIAASLVI SEKTARNHVE RTYAKIGVSN
510
RIGASMYALR HGLVNPVPS
Length:519
Mass (Da):55,593
Last modified:May 16, 2012 - v1
Checksum:i327E637BE14D18AF
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003322 Genomic DNA. Translation: AFC45270.1.
RefSeqiWP_014380953.1. NC_016946.1.

Genome annotation databases

EnsemblBacteriaiAFC45270; AFC45270; OCU_40510.
GeneIDi11910806.
KEGGimia:OCU_40510.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003322 Genomic DNA. Translation: AFC45270.1.
RefSeqiWP_014380953.1. NC_016946.1.

3D structure databases

ProteinModelPortaliH8IN87.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAFC45270; AFC45270; OCU_40510.
GeneIDi11910806.
KEGGimia:OCU_40510.

Enzyme and pathway databases

BioCyciMINT487521:GLGN-4094-MONOMER.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
1.10.3210.10. 1 hit.
InterProiIPR003607. HD/PDEase_dom.
IPR006674. HD_domain.
IPR016032. Sig_transdc_resp-reg_C-effctor.
IPR000792. Tscrpt_reg_LuxR_C.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00196. GerE. 1 hit.
[Graphical view]
PRINTSiPR00038. HTHLUXR.
SMARTiSM00471. HDc. 1 hit.
SM00421. HTH_LUXR. 1 hit.
[Graphical view]
SUPFAMiSSF46894. SSF46894. 1 hit.
PROSITEiPS50043. HTH_LUXR_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete genome sequence of Mycobacterium intracellulare strain ATCC 13950T."
    Kim B.J., Choi B.S., Lim J.S., Choi I.Y., Lee J.H., Chun J., Kook Y.H., Kim B.J.
    J. Bacteriol. 194:2750-2750(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 13950 / DSM 43223 / JCM 6384 / NCTC 13025 / 3600Imported.

Entry informationi

Entry nameiH8IN87_MYCIA
AccessioniPrimary (citable) accession number: H8IN87
Entry historyi
Integrated into UniProtKB/TrEMBL: May 16, 2012
Last sequence update: May 16, 2012
Last modified: July 22, 2015
This is version 25 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.