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Protein

Superoxide dismutase [Cu-Zn]

Gene

sodC

Organism
Pasteurella multocida (strain HN06)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Destroys radicals which are normally produced within the cells and which are toxic to biological systems.UniRule annotation

Catalytic activityi

2 superoxide + 2 H+ = O2 + H2O2.UniRule annotation

Cofactori

Protein has several cofactor binding sites:
  • Cu cationUniRule annotationNote: Binds 1 copper ion per subunit.UniRule annotation
  • Zn2+UniRule annotationNote: Binds 1 zinc ion per subunit.UniRule annotation

GO - Molecular functioni

  1. metal ion binding Source: UniProtKB-KW
  2. superoxide dismutase activity Source: UniProtKB-EC
Complete GO annotation...

Keywords - Molecular functioni

OxidoreductaseUniRule annotation

Keywords - Ligandi

CopperUniRule annotation, Metal-bindingUniRule annotation, ZincUniRule annotation

Enzyme and pathway databases

BioCyciPMUL1132496:GLIB-1401-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Superoxide dismutase [Cu-Zn]UniRule annotation (EC:1.15.1.1UniRule annotation)
Gene namesi
Name:sodCImported
Ordered Locus Names:PMCN06_1370Imported
OrganismiPasteurella multocida (strain HN06)Imported
Taxonomic identifieri1132496 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPasteurellalesPasteurellaceaePasteurella
ProteomesiUP000007889: Chromosome

Family & Domainsi

Sequence similaritiesi

Belongs to the Cu-Zn superoxide dismutase family.UniRule annotation

Phylogenomic databases

KOiK04565.

Family and domain databases

Gene3Di2.60.40.200. 1 hit.
InterProiIPR018152. SOD_Cu/Zn_BS.
IPR001424. SOD_Cu_Zn_dom.
[Graphical view]
PfamiPF00080. Sod_Cu. 1 hit.
[Graphical view]
SUPFAMiSSF49329. SSF49329. 1 hit.
PROSITEiPS00087. SOD_CU_ZN_1. 1 hit.
PS00332. SOD_CU_ZN_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

H8IF46-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKKTVLSLMF SCGVVVSGFA HNHAVEHKHS GEMIEVKVEL LDPVKGNQEI
60 70 80 90 100
GKVVITESAY GLVFTPELKN LTAGLHGFHI HQNPSCDAKE KDGKLVAGLA
110 120 130 140 150
AGGHWDPKNA GKHGYPWSDD AHLGDLPALA VNQDGTANNP VLAPRLKHLD
160 170 180
DVKGRSLMIH EGGDNHDDHP APLGGGGPRM ACGVIK
Length:186
Mass (Da):19,730
Last modified:May 16, 2012 - v1
Checksum:i4462BAC62823ED44
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003313 Genomic DNA. Translation: AFF24604.1.
RefSeqiWP_014391436.1. NC_017027.1.
YP_005363775.1. NC_017027.1.

Genome annotation databases

EnsemblBacteriaiAFF24604; AFF24604; PMCN06_1370.
GeneIDi11962828.
KEGGipmv:PMCN06_1370.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003313 Genomic DNA. Translation: AFF24604.1.
RefSeqiWP_014391436.1. NC_017027.1.
YP_005363775.1. NC_017027.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAFF24604; AFF24604; PMCN06_1370.
GeneIDi11962828.
KEGGipmv:PMCN06_1370.

Phylogenomic databases

KOiK04565.

Enzyme and pathway databases

BioCyciPMUL1132496:GLIB-1401-MONOMER.

Family and domain databases

Gene3Di2.60.40.200. 1 hit.
InterProiIPR018152. SOD_Cu/Zn_BS.
IPR001424. SOD_Cu_Zn_dom.
[Graphical view]
PfamiPF00080. Sod_Cu. 1 hit.
[Graphical view]
SUPFAMiSSF49329. SSF49329. 1 hit.
PROSITEiPS00087. SOD_CU_ZN_1. 1 hit.
PS00332. SOD_CU_ZN_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete genome sequence of Pasteurella multocida HN06, a toxigenic strain of serogroup D."
    Liu W., Xu Z., Liang W., Wu B.
    Submitted (FEB-2012) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HN06Imported.

Entry informationi

Entry nameiH8IF46_PASMH
AccessioniPrimary (citable) accession number: H8IF46
Entry historyi
Integrated into UniProtKB/TrEMBL: May 16, 2012
Last sequence update: May 16, 2012
Last modified: February 4, 2015
This is version 20 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.