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Protein
Submitted name:

Stromal cell-derived factor 1

Gene

Cxcl12

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Submitted name:
Stromal cell-derived factor 1Imported
Gene namesi
Name:Cxcl12Imported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 6

Organism-specific databases

MGIiMGI:103556 Cxcl12

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 21Sequence analysisAdd BLAST21
ChainiPRO_500568351722 – 119Sequence analysisAdd BLAST98

Proteomic databases

MaxQBiH7BX38
PeptideAtlasiH7BX38

PTM databases

iPTMnetiH7BX38

Expressioni

Gene expression databases

BgeeiENSMUSG00000061353
ExpressionAtlasiH7BX38 baseline and differential

Interactioni

GO - Molecular functioni

Structurei

3D structure databases

ProteinModelPortaliH7BX38
SMRiH7BX38
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini27 – 86SCYInterPro annotationAdd BLAST60

Keywords - Domaini

SignalSequence analysis

Phylogenomic databases

eggNOGiENOG410J1S5 Eukaryota
ENOG4112BS6 LUCA
GeneTreeiENSGT00390000014056
OMAiSTPNCAL
OrthoDBiEOG091G14JB
TreeFamiTF353159

Family and domain databases

CDDicd00273 Chemokine_CXC, 1 hit
InterProiView protein in InterPro
IPR001811 Chemokine_IL8-like_dom
IPR033899 CXC_Chemokine_domain
IPR036048 Interleukin_8-like_sf
PfamiView protein in Pfam
PF00048 IL8, 1 hit
SMARTiView protein in SMART
SM00199 SCY, 1 hit
SUPFAMiSSF54117 SSF54117, 1 hit

Sequencei

Sequence statusi: Complete.

H7BX38-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDAKVVAVLA LVLAALCISD GKPVSLSYRC PCRFFESHIA RANVKHLKIL
60 70 80 90 100
NTPNCALQIV ARLKNNNRQV CIDPKLKWIQ EYLEKALNKG RREEKVGKKE
110
KIGKKKRQKK RKAAQKRKN
Length:119
Mass (Da):13,634
Last modified:April 18, 2012 - v1
Checksum:iE87A2F139C651B2E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC155646 Genomic DNA No translation available.
RefSeqiNP_001012495.1, NM_001012477.2
UniGeneiMm.303231

Genome annotation databases

EnsembliENSMUST00000073043; ENSMUSP00000072800; ENSMUSG00000061353
GeneIDi20315
UCSCiuc009dkt.2 mouse

Similar proteinsi

Entry informationi

Entry nameiH7BX38_MOUSE
AccessioniPrimary (citable) accession number: H7BX38
Entry historyiIntegrated into UniProtKB/TrEMBL: April 18, 2012
Last sequence update: April 18, 2012
Last modified: April 25, 2018
This is version 53 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported
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Main funding by: National Institutes of Health