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Protein
Submitted name:

Stromal cell-derived factor 1

Gene

Cxcl12

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Stromal cell-derived factor 1Imported
Gene namesi
Name:Cxcl12Imported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 6

Organism-specific databases

MGIiMGI:103556. Cxcl12.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2121Sequence analysisAdd
BLAST
Chaini22 – 11998Sequence analysisPRO_5005683517Add
BLAST

Proteomic databases

PaxDbiH7BX38.
PeptideAtlasiH7BX38.

PTM databases

iPTMnetiH7BX38.

Expressioni

Gene expression databases

BgeeiENSMUSG00000061353.
ExpressionAtlasiH7BX38. baseline and differential.

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000072800.

Structurei

3D structure databases

ProteinModelPortaliH7BX38.
SMRiH7BX38. Positions 26-87.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini27 – 8660SCYInterPro annotationAdd
BLAST

Keywords - Domaini

SignalSequence analysis

Phylogenomic databases

eggNOGiENOG410J1S5. Eukaryota.
ENOG4112BS6. LUCA.
GeneTreeiENSGT00390000014056.
OMAiSTPNCAL.
OrthoDBiEOG091G14JB.
TreeFamiTF353159.

Family and domain databases

InterProiIPR001811. Chemokine_IL8-like_dom.
[Graphical view]
PfamiPF00048. IL8. 1 hit.
[Graphical view]
SMARTiSM00199. SCY. 1 hit.
[Graphical view]
SUPFAMiSSF54117. SSF54117. 1 hit.

Sequencei

Sequence statusi: Complete.

H7BX38-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDAKVVAVLA LVLAALCISD GKPVSLSYRC PCRFFESHIA RANVKHLKIL
60 70 80 90 100
NTPNCALQIV ARLKNNNRQV CIDPKLKWIQ EYLEKALNKG RREEKVGKKE
110
KIGKKKRQKK RKAAQKRKN
Length:119
Mass (Da):13,634
Last modified:April 18, 2012 - v1
Checksum:iE87A2F139C651B2E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC155646 Genomic DNA. No translation available.
RefSeqiNP_001012495.1. NM_001012477.2.
UniGeneiMm.303231.

Genome annotation databases

EnsembliENSMUST00000073043; ENSMUSP00000072800; ENSMUSG00000061353.
GeneIDi20315.
UCSCiuc009dkt.2. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC155646 Genomic DNA. No translation available.
RefSeqiNP_001012495.1. NM_001012477.2.
UniGeneiMm.303231.

3D structure databases

ProteinModelPortaliH7BX38.
SMRiH7BX38. Positions 26-87.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000072800.

PTM databases

iPTMnetiH7BX38.

Proteomic databases

PaxDbiH7BX38.
PeptideAtlasiH7BX38.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000073043; ENSMUSP00000072800; ENSMUSG00000061353.
GeneIDi20315.
UCSCiuc009dkt.2. mouse.

Organism-specific databases

CTDi6387.
MGIiMGI:103556. Cxcl12.

Phylogenomic databases

eggNOGiENOG410J1S5. Eukaryota.
ENOG4112BS6. LUCA.
GeneTreeiENSGT00390000014056.
OMAiSTPNCAL.
OrthoDBiEOG091G14JB.
TreeFamiTF353159.

Miscellaneous databases

ChiTaRSiCxcl12. mouse.
SOURCEiSearch...

Gene expression databases

BgeeiENSMUSG00000061353.
ExpressionAtlasiH7BX38. baseline and differential.

Family and domain databases

InterProiIPR001811. Chemokine_IL8-like_dom.
[Graphical view]
PfamiPF00048. IL8. 1 hit.
[Graphical view]
SMARTiSM00199. SCY. 1 hit.
[Graphical view]
SUPFAMiSSF54117. SSF54117. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiH7BX38_MOUSE
AccessioniPrimary (citable) accession number: H7BX38
Entry historyi
Integrated into UniProtKB/TrEMBL: April 18, 2012
Last sequence update: April 18, 2012
Last modified: September 7, 2016
This is version 38 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.