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H6PYD4 (H6PYD4_RICRI) Unreviewed, UniProtKB/TrEMBL

Last modified April 3, 2013. Version 7. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
NADH-quinone oxidoreductase subunit D HAMAP-Rule MF_01358
EC=1.6.99.5 HAMAP-Rule MF_01358
Alternative name(s):
NADH dehydrogenase I subunit D HAMAP-Rule MF_01358
NDH-1 subunit D HAMAP-Rule MF_01358
Gene names
Name:nuoD HAMAP-Rule MF_01358
ORF Names:RPJ_02710 EMBL AFB27468.1
OrganismRickettsia rickettsii str. Hino EMBL AFB27468.1
Taxonomic identifier1105100 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Alphaproteobacteria › Rickettsiales › Rickettsiaceae › Rickettsieae › Rickettsia › spotted fever group ›

Protein attributes

Sequence length391 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient By similarity. HAMAP-Rule MF_01358

Catalytic activity

NADH + quinone = NAD+ + quinol. HAMAP-Rule MF_01358

Subunit structure

NDH-1 is composed of 14 different subunits. Subunits NuoB, C, D, E, F, and G constitute the peripheral sector of the complex By similarity. HAMAP-Rule MF_01358

Subcellular location

Cell membrane; Peripheral membrane protein; Cytoplasmic side By similarity HAMAP-Rule MF_01358.

Sequence similarities

Belongs to the complex I 49 kDa subunit family. RuleBase RU003685 HAMAP-Rule MF_01358

Sequences

Sequence LengthMass (Da)Tools
H6PYD4 [UniParc].

Last modified April 18, 2012. Version 1.
Checksum: 83DF3F93D6B16876

FASTA39144,683
        10         20         30         40         50         60 
MTNNTKTITL NLGPQHPATH GVLRLILEMD GEVVNNADPH IGLLHRGTEK LIEHKTYLQA 

        70         80         90        100        110        120 
IPYFDRLDYV SPMCQEHAFA LAVESLLECE VPRRAQFIRV LFSELTRILN HTLNIGSQAL 

       130        140        150        160        170        180 
DIGATTPLLW LFEEREKIME FYEHVSGSRM HSNYFRPGGV VADLPEGLLE DIDKFIEQFP 

       190        200        210        220        230        240 
PKLHDIESLL NENRLWKQRL VDIGVVSQKE AMDWGFSGPM LRGSGIAWDL RKSNPYDVYD 

       250        260        270        280        290        300 
EMDFKVPIGK NGDCYDRYFV RMLEMYESIK IIKQCIEKMP KGAIKTDDPK LTPPTRAKMK 

       310        320        330        340        350        360 
ESMEAMIHHF KLYTEGYDVP AGETYKAVEA PKGEFGVYLY SRGGNRPYRC RIKAPGFAHL 

       370        380        390 
QGLDFMSQGH LMADVITIIA TLDIVFGEID R

« Hide

References

[1]Johnson S.L., Sims D., Han S., Bruce D.C., Dasch G.A.
Submitted (FEB-2012) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: Hino EMBL AFB27468.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP003309 Genomic DNA. Translation: AFB27468.1.
RefSeqYP_005293901.1. NC_016914.1.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAFB27468; AFB27468; RPJ_02710.
GeneID11865896.
KEGGrrn:RPJ_02710.

Phylogenomic databases

KOK00333.

Family and domain databases

HAMAPMF_01358. NDH1_NuoD.
InterProIPR001135. NADH_Q_OxRdtase_suD.
IPR014029. NADH_UbQ_OxRdtase_49kDa_CS.
IPR022885. NDH1_su_D/H.
[Graphical view]
PfamPF00346. Complex1_49kDa. 1 hit.
[Graphical view]
TIGRFAMsTIGR01962. NuoD. 1 hit.
PROSITEPS00535. COMPLEX1_49K. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameH6PYD4_RICRI
AccessionPrimary (citable) accession number: H6PYD4
Entry history
Integrated into UniProtKB/TrEMBL: April 18, 2012
Last sequence update: April 18, 2012
Last modified: April 3, 2013
This is version 7 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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