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H6NMB8

- H6NMB8_9BACL

UniProt

H6NMB8 - H6NMB8_9BACL

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Protein
Xylose isomerase
Gene
xylA, PM3016_6667
Organism
Paenibacillus mucilaginosus 3016
Status
Unreviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Catalytic activityi

D-xylopyranose = D-xylulose.UniRule annotationSAAS annotations

Cofactori

Binds 2 magnesium ions per subunit By similarity.UniRule annotation

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei99 – 991 By similarityUniRule annotation
Active sitei102 – 1021 By similarityUniRule annotation
Metal bindingi230 – 2301Magnesium 1 By similarityUniRule annotation
Metal bindingi266 – 2661Magnesium 1 By similarityUniRule annotation
Metal bindingi266 – 2661Magnesium 2 By similarityUniRule annotation
Metal bindingi269 – 2691Magnesium 2 By similarityUniRule annotation
Metal bindingi294 – 2941Magnesium 1 By similarityUniRule annotation
Metal bindingi305 – 3051Magnesium 2 By similarityUniRule annotation
Metal bindingi307 – 3071Magnesium 2 By similarityUniRule annotation
Metal bindingi337 – 3371Magnesium 1 By similarityUniRule annotation

GO - Molecular functioni

  1. magnesium ion binding Source: UniProtKB-HAMAP
  2. xylose isomerase activity Source: UniProtKB-HAMAP
Complete GO annotation...

GO - Biological processi

  1. D-xylose metabolic process Source: UniProtKB-HAMAP
  2. pentose-phosphate shunt Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

IsomeraseUniRule annotationSAAS annotations

Keywords - Biological processi

Carbohydrate metabolism, Pentose shuntUniRule annotationSAAS annotations, Xylose metabolismUniRule annotationSAAS annotations

Keywords - Ligandi

MagnesiumUniRule annotationSAAS annotations, Metal-bindingUniRule annotationSAAS annotations

Enzyme and pathway databases

BioCyciPMUC1116391:GLI5-6698-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Xylose isomeraseUniRule annotation (EC:5.3.1.5UniRule annotation)
Gene namesi
Name:xylAUniRule annotation
ORF Names:PM3016_6667Imported
OrganismiPaenibacillus mucilaginosus 3016Imported
Taxonomic identifieri1116391 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesPaenibacillaceaePaenibacillus
ProteomesiUP000007523: Chromosome

Subcellular locationi

Cytoplasm By similarity UniRule annotationSAAS annotations

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

CytoplasmUniRule annotationSAAS annotations

Interactioni

Subunit structurei

Homotetramer By similarity.UniRule annotationSAAS annotations

Structurei

3D structure databases

ProteinModelPortaliH6NMB8.

Family & Domainsi

Sequence similaritiesi

Belongs to the xylose isomerase family.UniRule annotation

Phylogenomic databases

KOiK01805.

Family and domain databases

Gene3Di3.20.20.150. 1 hit.
HAMAPiMF_00455. Xylose_isom_A.
InterProiIPR013022. Xyl_isomerase-like_TIM-brl.
IPR013452. Xylose_isom_bac.
IPR001998. Xylose_isomerase.
[Graphical view]
PfamiPF01261. AP_endonuc_2. 1 hit.
[Graphical view]
PRINTSiPR00688. XYLOSISMRASE.
SUPFAMiSSF51658. SSF51658. 1 hit.
TIGRFAMsiTIGR02630. xylose_isom_A. 1 hit.
PROSITEiPS51415. XYLOSE_ISOMERASE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

H6NMB8-1 [UniParc]FASTAAdd to Basket

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MSIFKNVPKI AYEGRNSDNP FAFKHYNPQE VVLGKTMEEH LRFAVAYWHT    50
YTANGTDPFG VGTMVRAWDS YSGLDQAKKR VEANFEFLDK IGVPYFCFHD 100
RDIAPEGETL QETNKNLDVI VAMTKEYMQS SGKKLLWNTA NMFSNPRFVH 150
GAGTTNNADV FAYAAAQVKK GLEVGLELGA ENYVFWGGRE GYETLLNTNM 200
KLELDNLARL LHMAVDYAKE IGFGAQFLIE PKPKEPTKHQ YDFDAATTIA 250
FLQNYGLKEH FKLNLEANHA TLAGHTFEHE LHVARINGML GSLDANQGDM 300
LLGWDTDEFP TDLYSATLTL YEVLKNGGLG KGGVNFDAKV RRGSFEDEDL 350
FYAHIAGMDS YARGLKAAAK LIEERILDDI IDNRYRSFNE GIGAEIVSGK 400
ATLASLEQYA LQNNPIRNES GRLERIRATL NEVIFSV 437
Length:437
Mass (Da):49,035
Last modified:April 18, 2012 - v1
Checksum:iAE4B41DF0657C078
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP003235 Genomic DNA. Translation: AFC33280.1.
RefSeqiWP_013920729.1. NC_016935.1.
YP_005316429.1. NC_016935.1.

Genome annotation databases

EnsemblBacteriaiAFC33280; AFC33280; PM3016_6667.
GeneIDi11888661.
KEGGipmq:PM3016_6667.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP003235 Genomic DNA. Translation: AFC33280.1 .
RefSeqi WP_013920729.1. NC_016935.1.
YP_005316429.1. NC_016935.1.

3D structure databases

ProteinModelPortali H6NMB8.
ModBasei Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AFC33280 ; AFC33280 ; PM3016_6667 .
GeneIDi 11888661.
KEGGi pmq:PM3016_6667.

Phylogenomic databases

KOi K01805.

Enzyme and pathway databases

BioCyci PMUC1116391:GLI5-6698-MONOMER.

Family and domain databases

Gene3Di 3.20.20.150. 1 hit.
HAMAPi MF_00455. Xylose_isom_A.
InterProi IPR013022. Xyl_isomerase-like_TIM-brl.
IPR013452. Xylose_isom_bac.
IPR001998. Xylose_isomerase.
[Graphical view ]
Pfami PF01261. AP_endonuc_2. 1 hit.
[Graphical view ]
PRINTSi PR00688. XYLOSISMRASE.
SUPFAMi SSF51658. SSF51658. 1 hit.
TIGRFAMsi TIGR02630. xylose_isom_A. 1 hit.
PROSITEi PS51415. XYLOSE_ISOMERASE. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete Genome Sequence of Paenibacillus mucilaginosus 3016, a Bacterium Functional as Microbial Fertilizer."
    Ma M., Wang Z., Li L., Jiang X., Guan D., Cao F., Chen H., Wang X., Shen D., Du B., Li J.
    J. Bacteriol. 194:2777-2778(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 3016Imported.

Entry informationi

Entry nameiH6NMB8_9BACL
AccessioniPrimary (citable) accession number: H6NMB8
Entry historyi
Integrated into UniProtKB/TrEMBL: April 18, 2012
Last sequence update: April 18, 2012
Last modified: September 3, 2014
This is version 18 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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