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H6NMB8

- H6NMB8_9BACL

UniProt

H6NMB8 - H6NMB8_9BACL

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Protein

Xylose isomerase

Gene

xylA

Organism
Paenibacillus mucilaginosus 3016
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Catalytic activityi

D-xylopyranose = D-xylulose.UniRule annotationSAAS annotation

Cofactori

Note: Binds 2 magnesium ions per subunit.UniRule annotation

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei99 – 991UniRule annotation
Active sitei102 – 1021UniRule annotation
Metal bindingi230 – 2301Magnesium 1UniRule annotation
Metal bindingi266 – 2661Magnesium 1UniRule annotation
Metal bindingi266 – 2661Magnesium 2UniRule annotation
Metal bindingi269 – 2691Magnesium 2UniRule annotation
Metal bindingi294 – 2941Magnesium 1UniRule annotation
Metal bindingi305 – 3051Magnesium 2UniRule annotation
Metal bindingi307 – 3071Magnesium 2UniRule annotation
Metal bindingi337 – 3371Magnesium 1UniRule annotation

GO - Molecular functioni

  1. magnesium ion binding Source: UniProtKB-HAMAP
  2. xylose isomerase activity Source: UniProtKB-HAMAP

GO - Biological processi

  1. D-xylose metabolic process Source: UniProtKB-HAMAP
  2. pentose-phosphate shunt Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

IsomeraseUniRule annotation

Keywords - Biological processi

Carbohydrate metabolism, Pentose shuntUniRule annotation, Xylose metabolismUniRule annotation

Keywords - Ligandi

MagnesiumUniRule annotationSAAS annotation, Metal-bindingUniRule annotation

Enzyme and pathway databases

BioCyciPMUC1116391:GLI5-6698-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Xylose isomeraseUniRule annotation (EC:5.3.1.5UniRule annotation)
Gene namesi
Name:xylAUniRule annotation
ORF Names:PM3016_6667Imported
OrganismiPaenibacillus mucilaginosus 3016Imported
Taxonomic identifieri1116391 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesPaenibacillaceaePaenibacillus
ProteomesiUP000007523: Chromosome

Subcellular locationi

Cytoplasm UniRule annotationSAAS annotation

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

CytoplasmUniRule annotationSAAS annotation

Interactioni

Subunit structurei

Homotetramer.UniRule annotationSAAS annotation

Structurei

3D structure databases

ProteinModelPortaliH6NMB8.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the xylose isomerase family.UniRule annotation

Phylogenomic databases

KOiK01805.

Family and domain databases

Gene3Di3.20.20.150. 1 hit.
HAMAPiMF_00455. Xylose_isom_A.
InterProiIPR013022. Xyl_isomerase-like_TIM-brl.
IPR013452. Xylose_isom_bac.
IPR001998. Xylose_isomerase.
[Graphical view]
PfamiPF01261. AP_endonuc_2. 1 hit.
[Graphical view]
PRINTSiPR00688. XYLOSISMRASE.
SUPFAMiSSF51658. SSF51658. 1 hit.
TIGRFAMsiTIGR02630. xylose_isom_A. 1 hit.
PROSITEiPS51415. XYLOSE_ISOMERASE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

H6NMB8-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MSIFKNVPKI AYEGRNSDNP FAFKHYNPQE VVLGKTMEEH LRFAVAYWHT
60 70 80 90 100
YTANGTDPFG VGTMVRAWDS YSGLDQAKKR VEANFEFLDK IGVPYFCFHD
110 120 130 140 150
RDIAPEGETL QETNKNLDVI VAMTKEYMQS SGKKLLWNTA NMFSNPRFVH
160 170 180 190 200
GAGTTNNADV FAYAAAQVKK GLEVGLELGA ENYVFWGGRE GYETLLNTNM
210 220 230 240 250
KLELDNLARL LHMAVDYAKE IGFGAQFLIE PKPKEPTKHQ YDFDAATTIA
260 270 280 290 300
FLQNYGLKEH FKLNLEANHA TLAGHTFEHE LHVARINGML GSLDANQGDM
310 320 330 340 350
LLGWDTDEFP TDLYSATLTL YEVLKNGGLG KGGVNFDAKV RRGSFEDEDL
360 370 380 390 400
FYAHIAGMDS YARGLKAAAK LIEERILDDI IDNRYRSFNE GIGAEIVSGK
410 420 430
ATLASLEQYA LQNNPIRNES GRLERIRATL NEVIFSV
Length:437
Mass (Da):49,035
Last modified:April 18, 2012 - v1
Checksum:iAE4B41DF0657C078
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003235 Genomic DNA. Translation: AFC33280.1.
RefSeqiYP_005316429.1. NC_016935.1.

Genome annotation databases

EnsemblBacteriaiAFC33280; AFC33280; PM3016_6667.
GeneIDi11888661.
KEGGipmq:PM3016_6667.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003235 Genomic DNA. Translation: AFC33280.1 .
RefSeqi YP_005316429.1. NC_016935.1.

3D structure databases

ProteinModelPortali H6NMB8.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AFC33280 ; AFC33280 ; PM3016_6667 .
GeneIDi 11888661.
KEGGi pmq:PM3016_6667.

Phylogenomic databases

KOi K01805.

Enzyme and pathway databases

BioCyci PMUC1116391:GLI5-6698-MONOMER.

Family and domain databases

Gene3Di 3.20.20.150. 1 hit.
HAMAPi MF_00455. Xylose_isom_A.
InterProi IPR013022. Xyl_isomerase-like_TIM-brl.
IPR013452. Xylose_isom_bac.
IPR001998. Xylose_isomerase.
[Graphical view ]
Pfami PF01261. AP_endonuc_2. 1 hit.
[Graphical view ]
PRINTSi PR00688. XYLOSISMRASE.
SUPFAMi SSF51658. SSF51658. 1 hit.
TIGRFAMsi TIGR02630. xylose_isom_A. 1 hit.
PROSITEi PS51415. XYLOSE_ISOMERASE. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete Genome Sequence of Paenibacillus mucilaginosus 3016, a Bacterium Functional as Microbial Fertilizer."
    Ma M., Wang Z., Li L., Jiang X., Guan D., Cao F., Chen H., Wang X., Shen D., Du B., Li J.
    J. Bacteriol. 194:2777-2778(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 3016Imported.

Entry informationi

Entry nameiH6NMB8_9BACL
AccessioniPrimary (citable) accession number: H6NMB8
Entry historyi
Integrated into UniProtKB/TrEMBL: April 18, 2012
Last sequence update: April 18, 2012
Last modified: November 26, 2014
This is version 21 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3