Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

DNA ligase

Gene

PM3016_4943

Organism
Paenibacillus mucilaginosus 3016
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciPMUC1116391:GLI5-4983-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligaseImported
Gene namesi
ORF Names:PM3016_4943Imported
OrganismiPaenibacillus mucilaginosus 3016Imported
Taxonomic identifieri1116391 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesPaenibacillaceaePaenibacillus
ProteomesiUP000007523 Componenti: Chromosome

Structurei

3D structure databases

ProteinModelPortaliH6NLW0.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

InterProiIPR012310. DNA_ligase_ATP-dep_cent.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

H6NLW0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPVFKPMAPI LTDRLPQGDE WGYQLKWDGF RILALVDEGR VELVSKYGLP
60 70 80 90 100
KTKTYPDLVR VLSRLPGRFL LDGEAVLLDP ATGRPSFQRM QQRDKLADPA
110 120 130 140 150
LIRRAAERSP VQYVAFDLLQ LGGRDLRGRP FRERHEALDQ LAADWEPPLC
160 170 180 190 200
TAQLFPDGDA LWDWVCEREW EGVIAKRLDS PYAEGKDHRD WFKRKTALRL
210 220 230 240 250
EAEAVGIVYR EGRVASLVLQ QGGKYLGRAS SGLDAAAKRE LGRLPTVPAA
260 270 280 290 300
GPRSGELPEG LRGAEIRWLA EPPARHRERP GADRSGTAAA PETAGDRRES
310 320 330 340 350
DMTDERGIVQ VDGVEVEISR PDKLLWPEPG ITKLIYLQKL AALSPYLLPY
360 370 380 390 400
CRDRHLTTRR FPHGVQGKFF YQKNAPGGRP DYVRTHLYEG VEYVNLDSLP
410 420 430 440 450
VLLWLGNLAA LEFHPSFETV HGEEPQEWVI DVDPSGRATP VSWRRPPGSE
460 470
RRWKGWACVR SPRPPELRAF KSWSR
Length:475
Mass (Da):53,804
Last modified:April 18, 2012 - v1
Checksum:i8D38853D6174B4EE
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003235 Genomic DNA. Translation: AFC31675.1.
RefSeqiYP_005314824.1. NC_016935.1.

Genome annotation databases

EnsemblBacteriaiAFC31675; AFC31675; PM3016_4943.
KEGGipmq:PM3016_4943.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003235 Genomic DNA. Translation: AFC31675.1.
RefSeqiYP_005314824.1. NC_016935.1.

3D structure databases

ProteinModelPortaliH6NLW0.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAFC31675; AFC31675; PM3016_4943.
KEGGipmq:PM3016_4943.

Phylogenomic databases

KOiK01971.

Enzyme and pathway databases

BioCyciPMUC1116391:GLI5-4983-MONOMER.

Family and domain databases

InterProiIPR012310. DNA_ligase_ATP-dep_cent.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete Genome Sequence of Paenibacillus mucilaginosus 3016, a Bacterium Functional as Microbial Fertilizer."
    Ma M., Wang Z., Li L., Jiang X., Guan D., Cao F., Chen H., Wang X., Shen D., Du B., Li J.
    J. Bacteriol. 194:2777-2778(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 3016Imported.

Entry informationi

Entry nameiH6NLW0_9BACL
AccessioniPrimary (citable) accession number: H6NLW0
Entry historyi
Integrated into UniProtKB/TrEMBL: April 18, 2012
Last sequence update: April 18, 2012
Last modified: April 1, 2015
This is version 16 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.