Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

ATP dependent DNA ligase

Gene

PM3016_2376

Organism
Paenibacillus mucilaginosus 3016
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciPMUC1116391:GLI5-2464-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
ORF Names:PM3016_2376Imported
OrganismiPaenibacillus mucilaginosus 3016Imported
Taxonomic identifieri1116391 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesPaenibacillaceaePaenibacillus
ProteomesiUP000007523: Chromosome

Structurei

3D structure databases

ProteinModelPortaliH6NKV8.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

H6NKV8-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MFISPMLLET AKHPFSNEHY LFEPKIDGHR LVLSRQGGQT RLYTRHHNDC
60 70 80 90 100
TFQYPELNPI ALDDVILDGE VAATDASGAI DFEAVMERFA LRRADKVRRA
110 120 130 140 150
AAERPVNYIV FDVLRYNGVD LRGLPLYRRK EILAGIDFGN PYMAKVPVVP
160 170 180 190 200
KEGERLFEQI AARQLEGIVA KRMDSVYVGH RSEAWLKIIN WQYAEVYLTG
210 220 230 240 250
YKKEGFGWLA ASAGPGGILK PAGLIELGIT PKHRTAFNGV RDQLQTGEDG
260 270 280
EFVYLEPKLK AKVKMRNWTR AGLLRSPVFM EFCR
Length:284
Mass (Da):32,270
Last modified:April 18, 2012 - v1
Checksum:iA87D5C56A4BFDB0E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003235 Genomic DNA. Translation: AFC29264.1.
RefSeqiYP_005312413.1. NC_016935.1.

Genome annotation databases

EnsemblBacteriaiAFC29264; AFC29264; PM3016_2376.
GeneIDi11884427.
KEGGipmq:PM3016_2376.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003235 Genomic DNA. Translation: AFC29264.1.
RefSeqiYP_005312413.1. NC_016935.1.

3D structure databases

ProteinModelPortaliH6NKV8.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAFC29264; AFC29264; PM3016_2376.
GeneIDi11884427.
KEGGipmq:PM3016_2376.

Phylogenomic databases

KOiK01971.

Enzyme and pathway databases

BioCyciPMUC1116391:GLI5-2464-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete Genome Sequence of Paenibacillus mucilaginosus 3016, a Bacterium Functional as Microbial Fertilizer."
    Ma M., Wang Z., Li L., Jiang X., Guan D., Cao F., Chen H., Wang X., Shen D., Du B., Li J.
    J. Bacteriol. 194:2777-2778(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 3016Imported.

Entry informationi

Entry nameiH6NKV8_9BACL
AccessioniPrimary (citable) accession number: H6NKV8
Entry historyi
Integrated into UniProtKB/TrEMBL: April 18, 2012
Last sequence update: April 18, 2012
Last modified: January 7, 2015
This is version 16 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.