Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Basket 0
(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

H6N063

- H6N063_GORPV

UniProt

H6N063 - H6N063_GORPV

Protein
Submitted name:

ATP-dependent DNA ligase

Gene

GPOL_c47210

Organism
Gordonia polyisoprenivorans (strain DSM 44266 / VH2)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
    • BLAST
    • Align
    • Format
    • Add to basket
    • History
      Entry version 14 (01 Oct 2014)
      Sequence version 1 (18 Apr 2012)
      Previous versions | rss
    • Help video
    • Feedback
    • Comment

    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: UniProtKB-EC

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciGPOL1112204:GJWY-4712-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP-dependent DNA ligaseImported (EC:6.5.1.1Imported)
    Gene namesi
    Ordered Locus Names:GPOL_c47210Imported
    OrganismiGordonia polyisoprenivorans (strain DSM 44266 / VH2)Imported
    Taxonomic identifieri1112204 [NCBI]
    Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeGordoniaceaeGordonia
    ProteomesiUP000009154: Chromosome

    Structurei

    3D structure databases

    ProteinModelPortaliH6N063.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    KOiK01971.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    H6N063-1 [UniParc]FASTAAdd to Basket

    « Hide

    MGDDGEVDLP VTPPVAPMLA KAASMVPAQP ADNPEWSYEP KWDGFRALIF    50
    RDGDEVVIGS RGGKDLARYF PEIVAAAREE LPLKVVLDGE IGVPSLIGDT 100
    HRLDWDSLAQ RIHPAASRVA MLAETTPAIF IGFDALALGN VGVIDESFVT 150
    RREALVEAIG PGGRDRRFHV SRVTADPAVA EDWFSAFEGA GLDGVVAKPL 200
    AGHYVENKRE MIKVKHKRTA DCVVIGYRVH KSGTGLGSML LGLFYDGELR 250
    MVGGAGAFTD AKRAELQQMF EPMRLDPDKP SAGEPTRWRS EKSGEWIPIR 300
    PELVAEVAYD QMENGRFRHT VKFLRWRPDR EPDSCGYEQL DVPLTYDLHD 350
    VLEGLD 356
    Length:356
    Mass (Da):39,262
    Last modified:April 18, 2012 - v1
    Checksum:iE68277DC931183B3
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP003119 Genomic DNA. Translation: AFA75720.1.
    RefSeqiWP_014361860.1. NC_016906.1.
    YP_005285086.1. NC_016906.1.

    Genome annotation databases

    EnsemblBacteriaiAFA75720; AFA75720; GPOL_c47210.
    GeneIDi11784730.
    KEGGigpo:GPOL_c47210.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP003119 Genomic DNA. Translation: AFA75720.1 .
    RefSeqi WP_014361860.1. NC_016906.1.
    YP_005285086.1. NC_016906.1.

    3D structure databases

    ProteinModelPortali H6N063.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AFA75720 ; AFA75720 ; GPOL_c47210 .
    GeneIDi 11784730.
    KEGGi gpo:GPOL_c47210.

    Phylogenomic databases

    KOi K01971.

    Enzyme and pathway databases

    BioCyci GPOL1112204:GJWY-4712-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Involvement of two latex-clearing proteins during rubber degradation and insights into the subsequent degradation pathway revealed by the genome sequence of Gordonia polyisoprenivorans strain VH2."
      Hiessl S., Schuldes J., Thurmer A., Halbsguth T., Broker D., Angelov A., Liebl W., Daniel R., Steinbuchel A.
      Appl. Environ. Microbiol. 78:2874-2887(2012) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: DSM 44266 / VH2Imported.

    Entry informationi

    Entry nameiH6N063_GORPV
    AccessioniPrimary (citable) accession number: H6N063
    Entry historyi
    Integrated into UniProtKB/TrEMBL: April 18, 2012
    Last sequence update: April 18, 2012
    Last modified: October 1, 2014
    This is version 14 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3