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Protein
Submitted name:

ATP-dependent DNA ligase

Gene

GPOL_c47210

Organism
Gordonia polyisoprenivorans (strain DSM 44266 / VH2)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciGPOL1112204:GJWY-4712-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligaseImported (EC:6.5.1.1Imported)
Gene namesi
Ordered Locus Names:GPOL_c47210Imported
OrganismiGordonia polyisoprenivorans (strain DSM 44266 / VH2)Imported
Taxonomic identifieri1112204 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeGordoniaceaeGordonia
ProteomesiUP000009154 Componenti: Chromosome

Structurei

3D structure databases

ProteinModelPortaliH6N063.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

H6N063-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGDDGEVDLP VTPPVAPMLA KAASMVPAQP ADNPEWSYEP KWDGFRALIF
60 70 80 90 100
RDGDEVVIGS RGGKDLARYF PEIVAAAREE LPLKVVLDGE IGVPSLIGDT
110 120 130 140 150
HRLDWDSLAQ RIHPAASRVA MLAETTPAIF IGFDALALGN VGVIDESFVT
160 170 180 190 200
RREALVEAIG PGGRDRRFHV SRVTADPAVA EDWFSAFEGA GLDGVVAKPL
210 220 230 240 250
AGHYVENKRE MIKVKHKRTA DCVVIGYRVH KSGTGLGSML LGLFYDGELR
260 270 280 290 300
MVGGAGAFTD AKRAELQQMF EPMRLDPDKP SAGEPTRWRS EKSGEWIPIR
310 320 330 340 350
PELVAEVAYD QMENGRFRHT VKFLRWRPDR EPDSCGYEQL DVPLTYDLHD

VLEGLD
Length:356
Mass (Da):39,262
Last modified:April 18, 2012 - v1
Checksum:iE68277DC931183B3
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003119 Genomic DNA. Translation: AFA75720.1.
RefSeqiWP_014361860.1. NC_016906.1.
YP_005285086.1. NC_016906.1.

Genome annotation databases

EnsemblBacteriaiAFA75720; AFA75720; GPOL_c47210.
KEGGigpo:GPOL_c47210.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003119 Genomic DNA. Translation: AFA75720.1.
RefSeqiWP_014361860.1. NC_016906.1.
YP_005285086.1. NC_016906.1.

3D structure databases

ProteinModelPortaliH6N063.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAFA75720; AFA75720; GPOL_c47210.
KEGGigpo:GPOL_c47210.

Enzyme and pathway databases

BioCyciGPOL1112204:GJWY-4712-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Involvement of Two Latex-Clearing Proteins during Rubber Degradation and Insights into the Subsequent Degradation Pathway Revealed by the Genome Sequence of Gordonia polyisoprenivorans Strain VH2."
    Hiessl S., Schuldes J., Thurmer A., Halbsguth T., Broker D., Angelov A., Liebl W., Daniel R., Steinbuchel A.
    Appl. Environ. Microbiol. 78:2874-2887(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 44266 / VH2Imported.

Entry informationi

Entry nameiH6N063_GORPV
AccessioniPrimary (citable) accession number: H6N063
Entry historyi
Integrated into UniProtKB/TrEMBL: April 18, 2012
Last sequence update: April 18, 2012
Last modified: April 29, 2015
This is version 18 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.