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H6MS94

- H6MS94_GORPV

UniProt

H6MS94 - H6MS94_GORPV

Protein

DNA ligase

Gene

lig

Organism
Gordonia polyisoprenivorans (strain DSM 44266 / VH2)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 15 (01 Oct 2014)
      Sequence version 1 (18 Apr 2012)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).

    GO - Molecular functioni

    1. ATP binding Source: UniProtKB-KW
    2. DNA binding Source: InterPro
    3. DNA ligase (ATP) activity Source: UniProtKB-EC

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: UniProtKB-KW
    3. DNA replication Source: UniProtKB-KW

    Keywords - Molecular functioni

    LigaseUniRule annotationImported

    Keywords - Biological processi

    DNA damage, DNA recombinationUniRule annotation, DNA repairUniRule annotation, DNA replicationUniRule annotation

    Keywords - Ligandi

    ATP-bindingUniRule annotation, Nucleotide-binding

    Enzyme and pathway databases

    BioCyciGPOL1112204:GJWY-279-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    DNA ligaseUniRule annotation (EC:6.5.1.1UniRule annotation)
    Gene namesi
    Name:ligImported
    Ordered Locus Names:GPOL_c02790Imported
    OrganismiGordonia polyisoprenivorans (strain DSM 44266 / VH2)Imported
    Taxonomic identifieri1112204 [NCBI]
    Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeGordoniaceaeGordonia
    ProteomesiUP000009154: Chromosome

    Structurei

    3D structure databases

    ProteinModelPortaliH6MS94.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ATP-dependent DNA ligase family.UniRule annotation

    Phylogenomic databases

    KOiK01971.

    Family and domain databases

    Gene3Di1.10.3260.10. 1 hit.
    2.40.50.140. 1 hit.
    InterProiIPR000977. DNA_ligase_ATP-dep.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR00574. dnl1. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    H6MS94-1 [UniParc]FASTAAdd to Basket

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    MMRFSSVVQA SAAVAATRSR TAKTAVLREL LATAADEVGL VVAWLSGEIP    50
    QGRLGIGWRT VRGIDVAPIP DEESLLTVSE VDDTFTRLAT TSGAGSVAAR 100
    AELLGNLFGR ATADEQNFLL RLLTGELRQG ALAGVMVEAI IAVSEQPAPL 150
    VRRAHMLTGS LSETATSAID GGRAVLEGIG LQVGRAVSPM LATPAEDLDS 200
    ALASLGPDLV VDHKLDGARI QVHRDGDEVA VFTRTLNDVT ARVPDLVAAV 250
    RELPLRSVIL DGETLTLFDD GRPRPFQETM SRFGSMVEED PGVDSGPRLL 300
    RPFFFDCLHL DGEDLIDRPL VERLDALDSF APHLRITSVR NPTPEQARHT 350
    LEAALAAGHE GVMVKSLSGP YAAGRRGKAW QKVKPVHTLD LVVLGAEWGS 400
    GRRTGYLSNI HLGARDPDGG PPVMVGKTFK GLTDKLLQWQ TEEFPKHEDH 450
    RDSWTVYLRP EIVVEIELDG VQRSSRYPGG VALRFARVLR YRPDKTADLA 500
    DTIDAVRGLL R 511
    Length:511
    Mass (Da):55,256
    Last modified:April 18, 2012 - v1
    Checksum:iB6047F2BD2446F39
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP003119 Genomic DNA. Translation: AFA71352.1.
    RefSeqiWP_006369089.1. NC_016906.1.
    YP_005280718.1. NC_016906.1.

    Genome annotation databases

    EnsemblBacteriaiAFA71352; AFA71352; GPOL_c02790.
    GeneIDi11780291.
    KEGGigpo:GPOL_c02790.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP003119 Genomic DNA. Translation: AFA71352.1 .
    RefSeqi WP_006369089.1. NC_016906.1.
    YP_005280718.1. NC_016906.1.

    3D structure databases

    ProteinModelPortali H6MS94.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AFA71352 ; AFA71352 ; GPOL_c02790 .
    GeneIDi 11780291.
    KEGGi gpo:GPOL_c02790.

    Phylogenomic databases

    KOi K01971.

    Enzyme and pathway databases

    BioCyci GPOL1112204:GJWY-279-MONOMER.

    Family and domain databases

    Gene3Di 1.10.3260.10. 1 hit.
    2.40.50.140. 1 hit.
    InterProi IPR000977. DNA_ligase_ATP-dep.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR00574. dnl1. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Involvement of two latex-clearing proteins during rubber degradation and insights into the subsequent degradation pathway revealed by the genome sequence of Gordonia polyisoprenivorans strain VH2."
      Hiessl S., Schuldes J., Thurmer A., Halbsguth T., Broker D., Angelov A., Liebl W., Daniel R., Steinbuchel A.
      Appl. Environ. Microbiol. 78:2874-2887(2012) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: DSM 44266 / VH2Imported.

    Entry informationi

    Entry nameiH6MS94_GORPV
    AccessioniPrimary (citable) accession number: H6MS94
    Entry historyi
    Integrated into UniProtKB/TrEMBL: April 18, 2012
    Last sequence update: April 18, 2012
    Last modified: October 1, 2014
    This is version 15 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3