H6MS94 (H6MS94_GORPV) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
DNA ligase RuleBase RU000617
EC=6.5.1.1 RuleBase RU000617

Gene names

Name:	lig EMBL AFA71352.1
Ordered Locus Names:	GPOL_c02790 EMBL AFA71352.1

Organism

Gordonia polyisoprenivorans (strain DSM 44266 / VH2) [Complete proteome] [HAMAP] EMBL AFA71352.1

Taxonomic identifier

1112204 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Actinobacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Corynebacterineae › Gordoniaceae › Gordonia › Gordonia polyisoprenivorans

Protein attributes

Sequence length	511 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity	ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m). RuleBase RU000617
Sequence similarities	Belongs to the ATP-dependent DNA ligase family. RuleBase RU004196

Ontologies

Keywords
Biological process	DNA damage DNA recombination RuleBase RU000617 DNA repair RuleBase RU000617 DNA replication RuleBase RU000617
Ligand	ATP-binding RuleBase RU000617 Nucleotide-binding
Molecular function	Ligase RuleBase RU000617 EMBL AFA71352.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: UniProtKB-KW DNA replication Inferred from electronic annotation. Source: UniProtKB-KW
Molecular_function	ATP binding Inferred from electronic annotation. Source: UniProtKB-KW DNA binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	H6MS94 [UniParc]. Last modified April 18, 2012. Version 1. Checksum: B6047F2BD2446F39	FASTA	511	55,256
	10 20 30 40 50 60 MMRFSSVVQA SAAVAATRSR TAKTAVLREL LATAADEVGL VVAWLSGEIP QGRLGIGWRT 70 80 90 100 110 120 VRGIDVAPIP DEESLLTVSE VDDTFTRLAT TSGAGSVAAR AELLGNLFGR ATADEQNFLL 130 140 150 160 170 180 RLLTGELRQG ALAGVMVEAI IAVSEQPAPL VRRAHMLTGS LSETATSAID GGRAVLEGIG 190 200 210 220 230 240 LQVGRAVSPM LATPAEDLDS ALASLGPDLV VDHKLDGARI QVHRDGDEVA VFTRTLNDVT 250 260 270 280 290 300 ARVPDLVAAV RELPLRSVIL DGETLTLFDD GRPRPFQETM SRFGSMVEED PGVDSGPRLL 310 320 330 340 350 360 RPFFFDCLHL DGEDLIDRPL VERLDALDSF APHLRITSVR NPTPEQARHT LEAALAAGHE 370 380 390 400 410 420 GVMVKSLSGP YAAGRRGKAW QKVKPVHTLD LVVLGAEWGS GRRTGYLSNI HLGARDPDGG 430 440 450 460 470 480 PPVMVGKTFK GLTDKLLQWQ TEEFPKHEDH RDSWTVYLRP EIVVEIELDG VQRSSRYPGG 490 500 510 VALRFARVLR YRPDKTADLA DTIDAVRGLL R

References

[1]

"Involvement of two latex-clearing proteins during rubber degradation and insights into the subsequent degradation pathway revealed by the genome sequence of Gordonia polyisoprenivorans strain VH2." Hiessl S., Schuldes J., Thurmer A., Halbsguth T., Broker D., Angelov A., Liebl W., Daniel R., Steinbuchel A. Appl. Environ. Microbiol. 78:2874-2887(2012) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: DSM 44266 / VH2.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP003119 Genomic DNA. Translation: AFA71352.1.
RefSeq	YP_005280718.1. NC_016906.1.
3D structure databases
ProteinModelPortal	H6MS94.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AFA71352; AFA71352; GPOL_c02790.
GeneID	11780291.
KEGG	gpo:GPOL_c02790.
Organism-specific databases
CMR	Search...
Phylogenomic databases
KO	K01971.
Family and domain databases
Gene3D	1.10.3260.10. 1 hit. 2.40.50.140. 1 hit.
InterPro	IPR000977. DNA_ligase_ATP-dep. IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR012308. DNA_ligase_ATP-dep_N. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF04675. DNA_ligase_A_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit. SSF117018. SSF117018. 1 hit.
TIGRFAMs	TIGR00574. dnl1. 1 hit.
PROSITE	PS00697. DNA_LIGASE_A1. 1 hit. PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

H6MS94_GORPV

Accession

Primary (citable) accession number: H6MS94

Entry history

Integrated into UniProtKB/TrEMBL:	April 18, 2012
Last sequence update:	April 18, 2012
Last modified:	April 3, 2013
This is version 9 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)