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H6MS94

- H6MS94_GORPV

UniProt

H6MS94 - H6MS94_GORPV

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Protein

DNA ligase

Gene
lig, GPOL_c02790
Organism
Gordonia polyisoprenivorans (strain DSM 44266 / VH2)
Status
Unreviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Catalytic activityi

ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-KW
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: UniProtKB-KW
  3. DNA replication Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

LigaseUniRule annotationImported

Keywords - Biological processi

DNA damage, DNA recombinationUniRule annotation, DNA repairUniRule annotation, DNA replicationUniRule annotation

Keywords - Ligandi

ATP-bindingUniRule annotation, Nucleotide-binding

Enzyme and pathway databases

BioCyciGPOL1112204:GJWY-279-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
DNA ligaseUniRule annotation (EC:6.5.1.1UniRule annotation)
Gene namesi
Name:ligImported
Ordered Locus Names:GPOL_c02790Imported
OrganismiGordonia polyisoprenivorans (strain DSM 44266 / VH2)Imported
Taxonomic identifieri1112204 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeGordoniaceaeGordonia
ProteomesiUP000009154: Chromosome

Structurei

3D structure databases

ProteinModelPortaliH6MS94.

Family & Domainsi

Sequence similaritiesi

Belongs to the ATP-dependent DNA ligase family.UniRule annotation

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
InterProiIPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR00574. dnl1. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

H6MS94-1 [UniParc]FASTAAdd to Basket

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MMRFSSVVQA SAAVAATRSR TAKTAVLREL LATAADEVGL VVAWLSGEIP    50
QGRLGIGWRT VRGIDVAPIP DEESLLTVSE VDDTFTRLAT TSGAGSVAAR 100
AELLGNLFGR ATADEQNFLL RLLTGELRQG ALAGVMVEAI IAVSEQPAPL 150
VRRAHMLTGS LSETATSAID GGRAVLEGIG LQVGRAVSPM LATPAEDLDS 200
ALASLGPDLV VDHKLDGARI QVHRDGDEVA VFTRTLNDVT ARVPDLVAAV 250
RELPLRSVIL DGETLTLFDD GRPRPFQETM SRFGSMVEED PGVDSGPRLL 300
RPFFFDCLHL DGEDLIDRPL VERLDALDSF APHLRITSVR NPTPEQARHT 350
LEAALAAGHE GVMVKSLSGP YAAGRRGKAW QKVKPVHTLD LVVLGAEWGS 400
GRRTGYLSNI HLGARDPDGG PPVMVGKTFK GLTDKLLQWQ TEEFPKHEDH 450
RDSWTVYLRP EIVVEIELDG VQRSSRYPGG VALRFARVLR YRPDKTADLA 500
DTIDAVRGLL R 511
Length:511
Mass (Da):55,256
Last modified:April 18, 2012 - v1
Checksum:iB6047F2BD2446F39
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP003119 Genomic DNA. Translation: AFA71352.1.
RefSeqiWP_006369089.1. NC_016906.1.
YP_005280718.1. NC_016906.1.

Genome annotation databases

EnsemblBacteriaiAFA71352; AFA71352; GPOL_c02790.
GeneIDi11780291.
KEGGigpo:GPOL_c02790.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP003119 Genomic DNA. Translation: AFA71352.1 .
RefSeqi WP_006369089.1. NC_016906.1.
YP_005280718.1. NC_016906.1.

3D structure databases

ProteinModelPortali H6MS94.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AFA71352 ; AFA71352 ; GPOL_c02790 .
GeneIDi 11780291.
KEGGi gpo:GPOL_c02790.

Phylogenomic databases

KOi K01971.

Enzyme and pathway databases

BioCyci GPOL1112204:GJWY-279-MONOMER.

Family and domain databases

Gene3Di 1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
InterProi IPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view ]
SUPFAMi SSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR00574. dnl1. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Involvement of Two Latex-Clearing Proteins during Rubber Degradation and Insights into the Subsequent Degradation Pathway Revealed by the Genome Sequence of Gordonia polyisoprenivorans Strain VH2."
    Hiessl S., Schuldes J., Thurmer A., Halbsguth T., Broker D., Angelov A., Liebl W., Daniel R., Steinbuchel A.
    Appl. Environ. Microbiol. 78:2874-2887(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 44266 / VH2.

Entry informationi

Entry nameiH6MS94_GORPV
AccessioniPrimary (citable) accession number: H6MS94
Entry historyi
Integrated into UniProtKB/TrEMBL: April 18, 2012
Last sequence update: April 18, 2012
Last modified: September 3, 2014
This is version 14 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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