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H6MS94

- H6MS94_GORPV

UniProt

H6MS94 - H6MS94_GORPV

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Protein

DNA ligase

Gene

lig

Organism
Gordonia polyisoprenivorans (strain DSM 44266 / VH2)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Catalytic activityi

ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).UniRule annotation

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-KW
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA biosynthetic process Source: InterPro
  2. DNA ligation involved in DNA repair Source: InterPro
  3. DNA recombination Source: UniProtKB-KW
  4. DNA replication Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

LigaseUniRule annotationImported

Keywords - Biological processi

DNA damage, DNA recombinationUniRule annotation, DNA repairUniRule annotation, DNA replicationUniRule annotation

Keywords - Ligandi

ATP-bindingUniRule annotation, Nucleotide-binding

Enzyme and pathway databases

BioCyciGPOL1112204:GJWY-279-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
DNA ligaseUniRule annotation (EC:6.5.1.1UniRule annotation)
Gene namesi
Name:ligImported
Ordered Locus Names:GPOL_c02790Imported
OrganismiGordonia polyisoprenivorans (strain DSM 44266 / VH2)Imported
Taxonomic identifieri1112204 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeGordoniaceaeGordonia
ProteomesiUP000009154: Chromosome

Structurei

3D structure databases

ProteinModelPortaliH6MS94.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ATP-dependent DNA ligase family.UniRule annotation

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
InterProiIPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR00574. dnl1. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

H6MS94-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MMRFSSVVQA SAAVAATRSR TAKTAVLREL LATAADEVGL VVAWLSGEIP
60 70 80 90 100
QGRLGIGWRT VRGIDVAPIP DEESLLTVSE VDDTFTRLAT TSGAGSVAAR
110 120 130 140 150
AELLGNLFGR ATADEQNFLL RLLTGELRQG ALAGVMVEAI IAVSEQPAPL
160 170 180 190 200
VRRAHMLTGS LSETATSAID GGRAVLEGIG LQVGRAVSPM LATPAEDLDS
210 220 230 240 250
ALASLGPDLV VDHKLDGARI QVHRDGDEVA VFTRTLNDVT ARVPDLVAAV
260 270 280 290 300
RELPLRSVIL DGETLTLFDD GRPRPFQETM SRFGSMVEED PGVDSGPRLL
310 320 330 340 350
RPFFFDCLHL DGEDLIDRPL VERLDALDSF APHLRITSVR NPTPEQARHT
360 370 380 390 400
LEAALAAGHE GVMVKSLSGP YAAGRRGKAW QKVKPVHTLD LVVLGAEWGS
410 420 430 440 450
GRRTGYLSNI HLGARDPDGG PPVMVGKTFK GLTDKLLQWQ TEEFPKHEDH
460 470 480 490 500
RDSWTVYLRP EIVVEIELDG VQRSSRYPGG VALRFARVLR YRPDKTADLA
510
DTIDAVRGLL R
Length:511
Mass (Da):55,256
Last modified:April 18, 2012 - v1
Checksum:iB6047F2BD2446F39
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP003119 Genomic DNA. Translation: AFA71352.1.
RefSeqiWP_006369089.1. NC_016906.1.
YP_005280718.1. NC_016906.1.

Genome annotation databases

EnsemblBacteriaiAFA71352; AFA71352; GPOL_c02790.
GeneIDi11780291.
KEGGigpo:GPOL_c02790.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP003119 Genomic DNA. Translation: AFA71352.1 .
RefSeqi WP_006369089.1. NC_016906.1.
YP_005280718.1. NC_016906.1.

3D structure databases

ProteinModelPortali H6MS94.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AFA71352 ; AFA71352 ; GPOL_c02790 .
GeneIDi 11780291.
KEGGi gpo:GPOL_c02790.

Phylogenomic databases

KOi K01971.

Enzyme and pathway databases

BioCyci GPOL1112204:GJWY-279-MONOMER.

Family and domain databases

Gene3Di 1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
InterProi IPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view ]
SUPFAMi SSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR00574. dnl1. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Involvement of two latex-clearing proteins during rubber degradation and insights into the subsequent degradation pathway revealed by the genome sequence of Gordonia polyisoprenivorans strain VH2."
    Hiessl S., Schuldes J., Thurmer A., Halbsguth T., Broker D., Angelov A., Liebl W., Daniel R., Steinbuchel A.
    Appl. Environ. Microbiol. 78:2874-2887(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 44266 / VH2Imported.

Entry informationi

Entry nameiH6MS94_GORPV
AccessioniPrimary (citable) accession number: H6MS94
Entry historyi
Integrated into UniProtKB/TrEMBL: April 18, 2012
Last sequence update: April 18, 2012
Last modified: October 29, 2014
This is version 16 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3