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H6MS94 (H6MS94_GORPV) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 13. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length511 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).

Sequence similarities

Belongs to the ATP-dependent DNA ligase family. RuleBase RU004196

Sequences

Sequence LengthMass (Da)Tools
H6MS94 [UniParc].

Last modified April 18, 2012. Version 1.
Checksum: B6047F2BD2446F39

FASTA51155,256
        10         20         30         40         50         60 
MMRFSSVVQA SAAVAATRSR TAKTAVLREL LATAADEVGL VVAWLSGEIP QGRLGIGWRT 

        70         80         90        100        110        120 
VRGIDVAPIP DEESLLTVSE VDDTFTRLAT TSGAGSVAAR AELLGNLFGR ATADEQNFLL 

       130        140        150        160        170        180 
RLLTGELRQG ALAGVMVEAI IAVSEQPAPL VRRAHMLTGS LSETATSAID GGRAVLEGIG 

       190        200        210        220        230        240 
LQVGRAVSPM LATPAEDLDS ALASLGPDLV VDHKLDGARI QVHRDGDEVA VFTRTLNDVT 

       250        260        270        280        290        300 
ARVPDLVAAV RELPLRSVIL DGETLTLFDD GRPRPFQETM SRFGSMVEED PGVDSGPRLL 

       310        320        330        340        350        360 
RPFFFDCLHL DGEDLIDRPL VERLDALDSF APHLRITSVR NPTPEQARHT LEAALAAGHE 

       370        380        390        400        410        420 
GVMVKSLSGP YAAGRRGKAW QKVKPVHTLD LVVLGAEWGS GRRTGYLSNI HLGARDPDGG 

       430        440        450        460        470        480 
PPVMVGKTFK GLTDKLLQWQ TEEFPKHEDH RDSWTVYLRP EIVVEIELDG VQRSSRYPGG 

       490        500        510 
VALRFARVLR YRPDKTADLA DTIDAVRGLL R 

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References

[1]"Involvement of Two Latex-Clearing Proteins during Rubber Degradation and Insights into the Subsequent Degradation Pathway Revealed by the Genome Sequence of Gordonia polyisoprenivorans Strain VH2."
Hiessl S., Schuldes J., Thurmer A., Halbsguth T., Broker D., Angelov A., Liebl W., Daniel R., Steinbuchel A.
Appl. Environ. Microbiol. 78:2874-2887(2012) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: DSM 44266 / VH2.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP003119 Genomic DNA. Translation: AFA71352.1.
RefSeqYP_005280718.1. NC_016906.1.

3D structure databases

ProteinModelPortalH6MS94.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAFA71352; AFA71352; GPOL_c02790.
GeneID11780291.
KEGGgpo:GPOL_c02790.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01971.

Enzyme and pathway databases

BioCycGPOL1112204:GJWY-279-MONOMER.

Family and domain databases

Gene3D1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
InterProIPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR00574. dnl1. 1 hit.
PROSITEPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameH6MS94_GORPV
AccessionPrimary (citable) accession number: H6MS94
Entry history
Integrated into UniProtKB/TrEMBL: April 18, 2012
Last sequence update: April 18, 2012
Last modified: April 16, 2014
This is version 13 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)