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Protein
Submitted name:

Cadherin-13

Gene

CDH13

Organism
Homo sapiens (Human)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Names & Taxonomyi

Protein namesi
Submitted name:
Cadherin-13Imported
Gene namesi
Name:CDH13Imported
OrganismiHomo sapiens (Human)Imported
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
ProteomesiUP000005640: Chromosome 16

Organism-specific databases

HGNCiHGNC:1753. CDH13.

Expressioni

Gene expression databases

BgeeiH3BV21.
ExpressionAtlasiH3BV21. baseline and differential.

Structurei

3D structure databases

ProteinModelPortaliH3BV21.
SMRiH3BV21. Positions 20-55.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

GeneTreeiENSGT00760000118906.

Family and domain databases

InterProiIPR014868. Cadherin_pro_dom.
[Graphical view]
PfamiPF08758. Cadherin_pro. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

H3BV21-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MQPRTPLVLC VLLSQVLLLT SAEDLDCTPG FQQKVFHINQ PAEFIEDQSI

LNYVFY
Length:56
Mass (Da):6,427
Last modified:April 18, 2012 - v1
Checksum:i17A02E21C57A33DF
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC009028 Genomic DNA. No translation available.
AC009063 Genomic DNA. No translation available.
AC009119 Genomic DNA. No translation available.
AC009142 Genomic DNA. No translation available.
AC087189 Genomic DNA. No translation available.
AC092340 Genomic DNA. No translation available.
AC092351 Genomic DNA. No translation available.
AC098804 Genomic DNA. No translation available.
AC099506 Genomic DNA. No translation available.
AC106814 Genomic DNA. No translation available.
AC125793 Genomic DNA. No translation available.
KC877608 Genomic DNA. No translation available.
KC877613 Genomic DNA. No translation available.
KC877618 Genomic DNA. No translation available.
KF456214 Genomic DNA. No translation available.

Genome annotation databases

EnsembliENST00000569144; ENSP00000457914; ENSG00000140945.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC009028 Genomic DNA. No translation available.
AC009063 Genomic DNA. No translation available.
AC009119 Genomic DNA. No translation available.
AC009142 Genomic DNA. No translation available.
AC087189 Genomic DNA. No translation available.
AC092340 Genomic DNA. No translation available.
AC092351 Genomic DNA. No translation available.
AC098804 Genomic DNA. No translation available.
AC099506 Genomic DNA. No translation available.
AC106814 Genomic DNA. No translation available.
AC125793 Genomic DNA. No translation available.
KC877608 Genomic DNA. No translation available.
KC877613 Genomic DNA. No translation available.
KC877618 Genomic DNA. No translation available.
KF456214 Genomic DNA. No translation available.

3D structure databases

ProteinModelPortaliH3BV21.
SMRiH3BV21. Positions 20-55.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000569144; ENSP00000457914; ENSG00000140945.

Organism-specific databases

HGNCiHGNC:1753. CDH13.
GenAtlasiSearch...

Phylogenomic databases

GeneTreeiENSGT00760000118906.

Miscellaneous databases

ChiTaRSiCDH13. human.
NextBioi35527654.

Gene expression databases

BgeeiH3BV21.
ExpressionAtlasiH3BV21. baseline and differential.

Family and domain databases

InterProiIPR014868. Cadherin_pro_dom.
[Graphical view]
PfamiPF08758. Cadherin_pro. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "The sequence and analysis of duplication-rich human chromosome 16."
    Martin J., Han C., Gordon L.A., Terry A., Prabhakar S., She X., Xie G., Hellsten U., Chan Y.M., Altherr M., Couronne O., Aerts A., Bajorek E., Black S., Blumer H., Branscomb E., Brown N.C., Bruno W.J.
    , Buckingham J.M., Callen D.F., Campbell C.S., Campbell M.L., Campbell E.W., Caoile C., Challacombe J.F., Chasteen L.A., Chertkov O., Chi H.C., Christensen M., Clark L.M., Cohn J.D., Denys M., Detter J.C., Dickson M., Dimitrijevic-Bussod M., Escobar J., Fawcett J.J., Flowers D., Fotopulos D., Glavina T., Gomez M., Gonzales E., Goodstein D., Goodwin L.A., Grady D.L., Grigoriev I., Groza M., Hammon N., Hawkins T., Haydu L., Hildebrand C.E., Huang W., Israni S., Jett J., Jewett P.B., Kadner K., Kimball H., Kobayashi A., Krawczyk M.-C., Leyba T., Longmire J.L., Lopez F., Lou Y., Lowry S., Ludeman T., Manohar C.F., Mark G.A., McMurray K.L., Meincke L.J., Morgan J., Moyzis R.K., Mundt M.O., Munk A.C., Nandkeshwar R.D., Pitluck S., Pollard M., Predki P., Parson-Quintana B., Ramirez L., Rash S., Retterer J., Ricke D.O., Robinson D.L., Rodriguez A., Salamov A., Saunders E.H., Scott D., Shough T., Stallings R.L., Stalvey M., Sutherland R.D., Tapia R., Tesmer J.G., Thayer N., Thompson L.S., Tice H., Torney D.C., Tran-Gyamfi M., Tsai M., Ulanovsky L.E., Ustaszewska A., Vo N., White P.S., Williams A.L., Wills P.L., Wu J.-R., Wu K., Yang J., DeJong P., Bruce D., Doggett N.A., Deaven L., Schmutz J., Grimwood J., Richardson P., Rokhsar D.S., Eichler E.E., Gilna P., Lucas S.M., Myers R.M., Rubin E.M., Pennacchio L.A.
    Nature 432:988-994(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  2. Ensembl
    Submitted (FEB-2012) to UniProtKB
    Cited for: IDENTIFICATION.

Entry informationi

Entry nameiH3BV21_HUMAN
AccessioniPrimary (citable) accession number: H3BV21
Entry historyi
Integrated into UniProtKB/TrEMBL: April 18, 2012
Last sequence update: April 18, 2012
Last modified: January 7, 2015
This is version 14 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.