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Protein
Submitted name:

Cadherin-13

Gene

CDH13

Organism
Homo sapiens (Human)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Names & Taxonomyi

Protein namesi
Submitted name:
Cadherin-13Imported
Gene namesi
Name:CDH13Imported
OrganismiHomo sapiens (Human)Imported
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
Proteomesi
  • UP000005640 Componenti: Chromosome 16

Organism-specific databases

HGNCiHGNC:1753. CDH13.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2222Sequence analysisAdd
BLAST
Chaini23 – 5634Sequence analysisPRO_5003580304Add
BLAST

Proteomic databases

PaxDbiH3BV21.

Expressioni

Gene expression databases

BgeeiH3BV21.
ExpressionAtlasiH3BV21. baseline and differential.

Interactioni

Protein-protein interaction databases

STRINGi9606.ENSP00000408632.

Structurei

3D structure databases

ProteinModelPortaliH3BV21.
SMRiH3BV21. Positions 20-55.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini27 – 5529Cadherin_proInterPro annotationAdd
BLAST

Keywords - Domaini

SignalSequence analysis

Phylogenomic databases

eggNOGiKOG3594. Eukaryota.
ENOG410XQHI. LUCA.
GeneTreeiENSGT00760000118906.

Family and domain databases

InterProiIPR014868. Cadherin_pro_dom.
IPR033216. CDH13.
[Graphical view]
PANTHERiPTHR24027:SF80. PTHR24027:SF80. 1 hit.
PfamiPF08758. Cadherin_pro. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

H3BV21-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQPRTPLVLC VLLSQVLLLT SAEDLDCTPG FQQKVFHINQ PAEFIEDQSI

LNYVFY
Length:56
Mass (Da):6,427
Last modified:April 18, 2012 - v1
Checksum:i17A02E21C57A33DF
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC009028 Genomic DNA. No translation available.
AC092351 Genomic DNA. No translation available.
AC099506 Genomic DNA. No translation available.
AC125793 Genomic DNA. No translation available.
KC877608 Genomic DNA. No translation available.
KC877613 Genomic DNA. No translation available.
KF456214 Genomic DNA. No translation available.

Genome annotation databases

EnsembliENST00000569144; ENSP00000457914; ENSG00000140945.
UCSCiuc059xri.1. human.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC009028 Genomic DNA. No translation available.
AC092351 Genomic DNA. No translation available.
AC099506 Genomic DNA. No translation available.
AC125793 Genomic DNA. No translation available.
KC877608 Genomic DNA. No translation available.
KC877613 Genomic DNA. No translation available.
KF456214 Genomic DNA. No translation available.

3D structure databases

ProteinModelPortaliH3BV21.
SMRiH3BV21. Positions 20-55.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi9606.ENSP00000408632.

Proteomic databases

PaxDbiH3BV21.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000569144; ENSP00000457914; ENSG00000140945.
UCSCiuc059xri.1. human.

Organism-specific databases

HGNCiHGNC:1753. CDH13.
GenAtlasiSearch...

Phylogenomic databases

eggNOGiKOG3594. Eukaryota.
ENOG410XQHI. LUCA.
GeneTreeiENSGT00760000118906.

Miscellaneous databases

ChiTaRSiCDH13. human.

Gene expression databases

BgeeiH3BV21.
ExpressionAtlasiH3BV21. baseline and differential.

Family and domain databases

InterProiIPR014868. Cadherin_pro_dom.
IPR033216. CDH13.
[Graphical view]
PANTHERiPTHR24027:SF80. PTHR24027:SF80. 1 hit.
PfamiPF08758. Cadherin_pro. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "The sequence and analysis of duplication-rich human chromosome 16."
    Martin J., Han C., Gordon L.A., Terry A., Prabhakar S., She X., Xie G., Hellsten U., Chan Y.M., Altherr M., Couronne O., Aerts A., Bajorek E., Black S., Blumer H., Branscomb E., Brown N.C., Bruno W.J.
    , Buckingham J.M., Callen D.F., Campbell C.S., Campbell M.L., Campbell E.W., Caoile C., Challacombe J.F., Chasteen L.A., Chertkov O., Chi H.C., Christensen M., Clark L.M., Cohn J.D., Denys M., Detter J.C., Dickson M., Dimitrijevic-Bussod M., Escobar J., Fawcett J.J., Flowers D., Fotopulos D., Glavina T., Gomez M., Gonzales E., Goodstein D., Goodwin L.A., Grady D.L., Grigoriev I., Groza M., Hammon N., Hawkins T., Haydu L., Hildebrand C.E., Huang W., Israni S., Jett J., Jewett P.B., Kadner K., Kimball H., Kobayashi A., Krawczyk M.-C., Leyba T., Longmire J.L., Lopez F., Lou Y., Lowry S., Ludeman T., Manohar C.F., Mark G.A., McMurray K.L., Meincke L.J., Morgan J., Moyzis R.K., Mundt M.O., Munk A.C., Nandkeshwar R.D., Pitluck S., Pollard M., Predki P., Parson-Quintana B., Ramirez L., Rash S., Retterer J., Ricke D.O., Robinson D.L., Rodriguez A., Salamov A., Saunders E.H., Scott D., Shough T., Stallings R.L., Stalvey M., Sutherland R.D., Tapia R., Tesmer J.G., Thayer N., Thompson L.S., Tice H., Torney D.C., Tran-Gyamfi M., Tsai M., Ulanovsky L.E., Ustaszewska A., Vo N., White P.S., Williams A.L., Wills P.L., Wu J.-R., Wu K., Yang J., DeJong P., Bruce D., Doggett N.A., Deaven L., Schmutz J., Grimwood J., Richardson P., Rokhsar D.S., Eichler E.E., Gilna P., Lucas S.M., Myers R.M., Rubin E.M., Pennacchio L.A.
    Nature 432:988-994(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  2. Ensembl
    Submitted (FEB-2012) to UniProtKB
    Cited for: IDENTIFICATION.

Entry informationi

Entry nameiH3BV21_HUMAN
AccessioniPrimary (citable) accession number: H3BV21
Entry historyi
Integrated into UniProtKB/TrEMBL: April 18, 2012
Last sequence update: April 18, 2012
Last modified: June 8, 2016
This is version 22 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.