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H2R1P1

- H2R1P1_PANTR

UniProt

H2R1P1 - H2R1P1_PANTR

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Protein
Submitted name: SET domain, bifurcated 2
Gene
SETDB2
Organism
Pan troglodytes (Chimpanzee)
Status
Unreviewed - Annotation score: 1 out of 5 - Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  1. DNA binding Source: InterPro
  2. histone methyltransferase activity (H3-K9 specific) Source: Ensembl
  3. zinc ion binding Source: InterPro

GO - Biological processi

  1. chromosome segregation Source: Ensembl
  2. mitotic nuclear division Source: Ensembl
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
SET domain, bifurcated 2Imported
Submitted name:
Uncharacterized proteinImported
Gene namesi
Name:SETDB2Imported
OrganismiPan troglodytes (Chimpanzee)Imported
Taxonomic identifieri9598 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaePan
ProteomesiUP000002277: Chromosome 13

Subcellular locationi

Nucleus By similarity

GO - Cellular componenti

  1. chromosome Source: UniProtKB-KW
  2. nucleus Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

ChromosomeSAAS annotations, NucleusSAAS annotations

Family & Domainsi

Sequence similaritiesi

Contains 1 SET domain.UniRule annotation
Contains 1 pre-SET domain.
Contains SET domain.SAAS annotations
Contains pre-SET domain.SAAS annotations

Phylogenomic databases

GeneTreeiENSGT00750000117355.
KOiK11421.
OMAiKCHFQRR.
OrthoDBiEOG7ZD1TG.
TreeFamiTF106411.

Family and domain databases

Gene3Di3.30.890.10. 1 hit.
InterProiIPR016177. DNA-bd_dom.
IPR001739. Methyl_CpG_DNA-bd.
IPR007728. Pre-SET_dom.
IPR001214. SET_dom.
[Graphical view]
PfamiPF01429. MBD. 1 hit.
PF05033. Pre-SET. 1 hit.
PF00856. SET. 1 hit.
[Graphical view]
SMARTiSM00317. SET. 1 hit.
[Graphical view]
SUPFAMiSSF54171. SSF54171. 1 hit.
PROSITEiPS50982. MBD. 1 hit.
PS50867. PRE_SET. 1 hit.
PS50280. SET. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

H2R1P1-1 [UniParc]FASTAAdd to Basket

« Hide

MGEKNGDAKT FWMELEDDGK VDFIFEQVQN VLQSLKQKIK DGSATNKEYI    50
QAMILVNEAT IINSSTSIKG ASQKEVNAQS SDHMPVTQKE QENKSNAFPS 100
TSCENSFPED CTFLTTENKE ILSLEDKVVD FREKDSSSNL SYQSHDCSGA 150
CLMKMPLNLK GENPLQLPIK CHFQRRHAKT NSHSSALHVS YKTPCGRSLR 200
NVEEVFRYLL ETECNFLFTD NFSFNTYVQL ARNYPKQKEV VSDVDISNGV 250
ESVPISFCNE IDSRKLPQFK YRKTVWPRAY NLTNFSSMFT DSCDCSEGCI 300
DITKCACLQL TARNAKTSPL SSDKITTGYK YKRLQRQIPT GIYECSLLCK 350
CNRQLCQNRV VQHGPQVRLQ VFKTEQKGWG VRCLDDIDRG TFVCIYSGRL 400
LSRANTEKSY GIDENGRDEN TMKNIFSKKR KLEVACSDCE VEVLPLGLET 450
HPRTAKTEKC PPKFSNNPKE LTMETKYDNI SRIQYHSVIR DPESKTAIFQ 500
HNGKKMEFVS SESVTPEDND GFKPPREHLN SKTKGAQKDS SSNHVDEFED 550
NLLIESDVID ITKYREETPP RSRCNQATTL DNQNIKKAIE VQIQKPQEGR 600
STACQRQQVF CDEELLSETK NTSSDSLTKF NKGNVFLLDA TKEGNVGRFL 650
NHSCCPNLSV QNVFVETHNR NFPLVAFFTN RYVKARTELT WDYGYEAGTV 700
PEKEIFCQCG VNKCRKKIL 719
Length:719
Mass (Da):81,940
Last modified:March 21, 2012 - v1
Checksum:i05DD253EA77F6EC5
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AACZ03092694 Genomic DNA. No translation available.
AACZ03092695 Genomic DNA. No translation available.
GABC01005395 mRNA. Translation: JAA05943.1.
GABF01000456 mRNA. Translation: JAA21689.1.
GABD01009723 mRNA. Translation: JAA23377.1.
GABE01006282 mRNA. Translation: JAA38457.1.
RefSeqiXP_001153947.1. XM_001153947.3.

Genome annotation databases

EnsembliENSPTRT00000048180; ENSPTRP00000042655; ENSPTRG00000005873.
GeneIDi452719.
KEGGiptr:452719.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AACZ03092694 Genomic DNA. No translation available.
AACZ03092695 Genomic DNA. No translation available.
GABC01005395 mRNA. Translation: JAA05943.1 .
GABF01000456 mRNA. Translation: JAA21689.1 .
GABD01009723 mRNA. Translation: JAA23377.1 .
GABE01006282 mRNA. Translation: JAA38457.1 .
RefSeqi XP_001153947.1. XM_001153947.3.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSPTRT00000048180 ; ENSPTRP00000042655 ; ENSPTRG00000005873 .
GeneIDi 452719.
KEGGi ptr:452719.

Organism-specific databases

CTDi 83852.

Phylogenomic databases

GeneTreei ENSGT00750000117355.
KOi K11421.
OMAi KCHFQRR.
OrthoDBi EOG7ZD1TG.
TreeFami TF106411.

Family and domain databases

Gene3Di 3.30.890.10. 1 hit.
InterProi IPR016177. DNA-bd_dom.
IPR001739. Methyl_CpG_DNA-bd.
IPR007728. Pre-SET_dom.
IPR001214. SET_dom.
[Graphical view ]
Pfami PF01429. MBD. 1 hit.
PF05033. Pre-SET. 1 hit.
PF00856. SET. 1 hit.
[Graphical view ]
SMARTi SM00317. SET. 1 hit.
[Graphical view ]
SUPFAMi SSF54171. SSF54171. 1 hit.
PROSITEi PS50982. MBD. 1 hit.
PS50867. PRE_SET. 1 hit.
PS50280. SET. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Initial sequence of the chimpanzee genome and comparison with the human genome."
    Chimpanzee sequencing and analysis consortium
    Nature 437:69-87(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  2. Ensembl
    Submitted (FEB-2012) to UniProtKB
    Cited for: IDENTIFICATION.
  3. "De novo assembly of the reference chimpanzee transcriptome from NextGen mRNA sequences."
    Maudhoo M.D., Meehan D.T., Norgren R.B.Jr.
    Submitted (OCT-2012) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Tissue: Adipose stromalImported, Skeletal muscleImported, SkinImported and Smooth vascularImported.

Entry informationi

Entry nameiH2R1P1_PANTR
AccessioniPrimary (citable) accession number: H2R1P1
Entry historyi
Integrated into UniProtKB/TrEMBL: March 21, 2012
Last sequence update: March 21, 2012
Last modified: September 3, 2014
This is version 19 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

External Data

Dasty 3

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