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Protein
Submitted name:

Chromodomain helicase DNA binding protein 4

Gene

CHD4

Organism
Pan troglodytes (Chimpanzee)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Submitted name:
Chromodomain helicase DNA binding protein 4Imported
Gene namesi
Name:CHD4Imported
OrganismiPan troglodytes (Chimpanzee)Imported
Taxonomic identifieri9598 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaePan
Proteomesi
  • UP000002277 Componenti: Chromosome 12

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusSAAS annotation

PTM / Processingi

Proteomic databases

PaxDbiH2QZP6.

Expressioni

Gene expression databases

BgeeiENSPTRG00000004580.

Interactioni

GO - Molecular functioni

Protein-protein interaction databases

STRINGi9598.ENSPTRP00000039322.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini35 – 92ChromoInterPro annotationAdd BLAST58
Domaini128 – 163ChromoInterPro annotationAdd BLAST36
Domaini244 – 428Helicase ATP-bindingInterPro annotationAdd BLAST185
Domaini560 – 709Helicase C-terminalInterPro annotationAdd BLAST150

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili794 – 814Sequence analysisAdd BLAST21
Coiled coili1162 – 1183Sequence analysisAdd BLAST22
Coiled coili1353 – 1373Sequence analysisAdd BLAST21

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

eggNOGiKOG0383. Eukaryota.
COG0553. LUCA.
GeneTreeiENSGT00760000119067.
InParanoidiH2QZP6.
OMAiITIDMAI.
OrthoDBiEOG091G00G4.
TreeFamiTF106448.

Family and domain databases

CDDicd00024. CHROMO. 2 hits.
cd00079. HELICc. 1 hit.
InterProiView protein in InterPro
IPR012957. CHD_C2.
IPR016197. Chromo-like_dom_sf.
IPR000953. Chromo/chromo_shadow_dom.
IPR023780. Chromo_domain.
IPR002464. DNA/RNA_helicase_DEAH_CS.
IPR009462. DUF1086.
IPR009463. DUF1087.
IPR014001. Helicase_ATP-bd.
IPR001650. Helicase_C.
IPR027417. P-loop_NTPase.
IPR000330. SNF2_N.
PfamiView protein in Pfam
PF08074. CHDCT2. 1 hit.
PF00385. Chromo. 1 hit.
PF06461. DUF1086. 1 hit.
PF06465. DUF1087. 1 hit.
PF00271. Helicase_C. 1 hit.
PF00176. SNF2_N. 1 hit.
SMARTiView protein in SMART
SM00298. CHROMO. 2 hits.
SM00487. DEXDc. 1 hit.
SM01146. DUF1086. 1 hit.
SM01147. DUF1087. 1 hit.
SM00490. HELICc. 1 hit.
SUPFAMiSSF52540. SSF52540. 2 hits.
SSF54160. SSF54160. 2 hits.
PROSITEiView protein in PROSITE
PS50013. CHROMO_2. 2 hits.
PS00690. DEAH_ATP_HELICASE. 1 hit.
PS51192. HELICASE_ATP_BIND_1. 1 hit.
PS51194. HELICASE_CTER. 1 hit.

Sequencei

Sequence statusi: Complete.

H2QZP6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
CPALKGKVQK ILIWKWGQPP SPTPVPRPPD ADPNTPSPKP LEGRPERQFF
60 70 80 90 100
VKWQGMSYWH CSWVSELQLE LHCQVMFRNY QRKNDMDEPP SGDFGGDEEK
110 120 130 140 150
SRKRKNKDPK FAEMEERFYR YGIKPEWMMI HRILNHSVDK KGHVHYLIKW
160 170 180 190 200
RDLPYDQASW ESEDVEIQDY DLFKQSYWNH RELMRGEEGR PGKKLKKVKL
210 220 230 240 250
RKLERPPETP TVDPTVKYER QPEYLDATGG TLHPYQMEGL NWLRFSWAQG
260 270 280 290 300
TDTILADEMG LGKTVQTAVF LYSLYKEGHS KGPFLVSAPL STIINWEREF
310 320 330 340 350
EMWAPDMYVV TYVGDKDSRA IIRENEFSFE DNAIRGGKKA SRMKKEASVK
360 370 380 390 400
FHVLLTSYEL ITIDMAILGS IDWACLIVDE AHRLKNNQSK FFRVLNGYSL
410 420 430 440 450
QHKLLLTGTP LQNNLEELFH LLNFLTPERF HNLEGFLEEF ADIAKEDQIK
460 470 480 490 500
KLHDMLGPHM LRRLKADVFK NMPSKTELIV RVELSPMQKK YYKYILTRNF
510 520 530 540 550
EALNARGGGN QVSLLNVVMD LKKCCNHPYL FPVAAMEAPK MPNGMYDGSA
560 570 580 590 600
LIRASGKLLL LQKMLKNLKE GGHRVLIFSQ MTKMLDLLED FLEHEGYKYE
610 620 630 640 650
RIDGGITGNM RQEAIDRFNA PGAQQFCFLL STRAGGLGIN LATADTVIIY
660 670 680 690 700
DSDWNPHNDI QAFSRAHRIG QNKKVMIYRF VTRASVEERI TQVAKKKMML
710 720 730 740 750
THLVVRPGLG SKTGSMSKQE LDDILKFGTE ELFKDEATDG GGDNKEGEDS
760 770 780 790 800
SVIHYDDKAI ERLLDRNQDE TEDTELQGMN EYLSSFKVAQ YVVREEEMGE
810 820 830 840 850
EEEVEREIIK QEESVDPDYW EKLLRHHYEQ QQEDLARNLG KGKRIRKQVN
860 870 880 890 900
YNDGSQEDRD WQDDQSDNQS DYSVASEEGD EDFDERSEAP RRPSRKGLRN
910 920 930 940 950
DKDKPLPPLL ARVGGNIEVL GFNARQRKAF LNAIMRYGMP PQDAFTTQWL
960 970 980 990 1000
VRDLRGKSEK EFKAYVSLFM RHLCEPGADG AETFADGVPR EGLSRQHVLT
1010 1020 1030 1040 1050
RIGVMSLIRK KVQEFEHVNG RWSMPELAEV EENKKMSQPG SPSPKTPTPS
1060 1070 1080 1090 1100
TPGDTQPNTP APVPPAEDGI KIEENSLKEE ESIEGEKEVK STAPETAIEC
1110 1120 1130 1140 1150
TQAPAPASED EKVVVEPPEG EEKVEKAEVK ERTEEPMETE PKGAADVEKV
1160 1170 1180 1190 1200
EEKSAIDLTP IVVEDKEEKK EEEEKKEVML QNGETPKDLN DEKQKKNIKQ
1210 1220 1230 1240 1250
RFMFNIADGG FTELHSLWQN EERAATVTKK TYEIWHRRHD YWLLAGIINH
1260 1270 1280 1290 1300
GYARWQDIQN DPRYAILNEP FKGEMNRGNF LEIKNKFLAR RFKLLEQALV
1310 1320 1330 1340 1350
IEEQLRRAAY LNMSEDPSHP SMALNTRFAE VECLAESHQH LSKESMAGNK
1360 1370 1380 1390 1400
PANAVLHKVL KQLEELLSDM KADVTRLPAT IARIPPVAVR LQMSERNILS
1410
RLANRAPEPT PQQV
Length:1,414
Mass (Da):162,724
Last modified:March 21, 2012 - v1
Checksum:i6237EDA3A88C4C5C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AACZ03089607 Genomic DNA. No translation available.
AACZ03089608 Genomic DNA. No translation available.
AACZ03089609 Genomic DNA. No translation available.
AACZ03089610 Genomic DNA. No translation available.

Genome annotation databases

EnsembliENSPTRT00000042594; ENSPTRP00000039322; ENSPTRG00000004580.

Similar proteinsi

Entry informationi

Entry nameiH2QZP6_PANTR
AccessioniPrimary (citable) accession number: H2QZP6
Entry historyiIntegrated into UniProtKB/TrEMBL: March 21, 2012
Last sequence update: March 21, 2012
Last modified: December 20, 2017
This is version 42 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteomeImported